AT1G47640

Predicted membrane protein (DUF2053)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016163
Physical Location & Seq
Reverse (-)
17518047 .. 17520129
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47640.1

Sequence Viewer

Length: 687 bp
ATGACGCTTTTTCACTTCTTCAACTGTGCGATTCTCACATTCGGTCCTCACGCGGTCTACTACTCCGCCACTCCCTTATCTGAATATGATACACTTGGAACCTCCGTGAAAGCTGCTGTTGTTTACCTTGCTACTGCATTGGTTAAGCTTGTTTGTTTGGCGACTTTTCTGCAAGTGTCTGAGACTGAAGTGTTTGACCCATACCAGGAAGCATTGAAAGCGATGATTGGATTCATAGATGTCGCTGGTCTGTATTATGCTCTGGCCCAGCTGACTCACAGGAACATCTCCCAAAACCATAAGTTTCAGGCTGTTGGTCTCGGGTGGGCATTCGCGGATTCTGTTTTGCACAGGTTGGCACCTCTCTGGGTTGGTGCTCGAGGACTGGAGTTCACTTGGGATTATGTTTTGCAAGGGCTTGAAGCCAATGCAAATCTGGTGTTCACGATATCTCTAGCTGCACTAGGTTCATTAATGTGGCTACGCAAGAACAAGCCGAAGAGTCTGATCCCCATCATATACACATGTGCAGTCATCATTGCGACAATGCCTTCGATCACAAGCTATCTAAAGAGAGTCAATGGATGGCATTTCCCGAAAATTGTTGGGTTTGAGCTGGCGACTTCTCTGGTAATGGCTTTTATCAGTTGTCAACTCTTCATCCTCTGTCAGAGACCGTCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2053

Protein Analysis

228

Amino Acids

25.31

Weight (kDa)

8.57

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2053 PF09767 2 - 161 1.3e-59 Predicted membrane protein (DUF2053)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47640
fragaria_vesca FvH4_2g40630
malus_domestica MD08G1039400.v1.1 MD15G1034100.v1.1
prunus_persica Prupe.1G387900_v2.0.a1
pyrus_communis pycom08g03150 pycom15g03140
rosa_chinensis RchiOBHm_Chr6g0300041
rosa_laevigata RLG00000011370
rosa_multiflora Rmu_sc0010665.1_g000003
rosa_roxburghii Rroxscaffold_7G00168170
rosa_rugosa Rorug06G0293800
rosa_samantha Rh6BG413700 Rh6DG406400
rosa_wichuraiana Rw6G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AccI GTMKAC 1 cut(s) 57
AccII CGCG 2 cut(s) 53, 335
AciI CCGC 3 cut(s) 53, 66, 335
AclWI GGATC 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 3 cut(s) 22, 217, 422
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 6 cut(s) 113, 148, 271, 458, 564, 616
AluI AGCT 6 cut(s) 113, 148, 271, 458, 564, 616
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 3 cut(s) 176, 323, 667
AlwI GGATC 1 cut(s) 502
Ama87I CYCGRG 2 cut(s) 320, 378
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 2 cut(s) 113, 458
ArsI GACNNNNNNTTYG 2 cut(s) 535, 567
AseI ATTAAT 1 cut(s) 473
AspS9I GGNCC 2 cut(s) 44, 265
AvaI CYCGRG 2 cut(s) 320, 378
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 100, 445
BccI CCATC 2 cut(s) 521, 579
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 3 cut(s) 176, 323, 667
BfaI CTAG 2 cut(s) 455, 464
BisI GCNGC 2 cut(s) 114, 459
BlsI GCNGC 2 cut(s) 115, 460
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 2 cut(s) 320, 378
BmgT120I GGNCC 2 cut(s) 44, 265
BmiI GGNNCC 2 cut(s) 100, 360
BmrFI CCNGG 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 407
BsaBI GATNNNNATC 1 cut(s) 512
BsaI GGTCTC 2 cut(s) 323, 667
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 537
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 1 cut(s) 206
BseGI GGATG 2 cut(s) 590, 660
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 390
BseXI GCAGC 2 cut(s) 100, 445
BseYI CCCAGC 1 cut(s) 267
BsgI GTGCAG 2 cut(s) 444, 549
Bsh1236I CGCG 2 cut(s) 53, 335
BshFI GGCC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 2 cut(s) 320, 378
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 3 cut(s) 176, 323, 667
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 266
Bso31I GGTCTC 2 cut(s) 323, 667
BsoBI CYCGRG 2 cut(s) 320, 378
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 2 cut(s) 507, 555
BspACI CCGC 3 cut(s) 53, 66, 335
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 2 cut(s) 53, 335
BspLI GGNNCC 2 cut(s) 100, 360
BspPI GGATC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 358
BspTNI GGTCTC 2 cut(s) 323, 667
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 1 cut(s) 390
BssMI GATC 2 cut(s) 507, 555
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 26, 678
Bst6I CTCTTC 2 cut(s) 494, 662
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 590, 660
BstFNI CGCG 2 cut(s) 53, 335
BstKTI GATC 2 cut(s) 510, 558
BstMAI GTCTC 3 cut(s) 176, 323, 667
BstMBI GATC 2 cut(s) 507, 555
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 2 cut(s) 53, 335
BstV1I GCAGC 2 cut(s) 100, 445
BsuRI GGCC 1 cut(s) 266
BtgZI GCGATG 1 cut(s) 236
BtsCI GGATG 2 cut(s) 590, 660
Cac8I GCNNGC 1 cut(s) 618
Cfr13I GGNCC 2 cut(s) 44, 265
CseI GACGC 1 cut(s) 13
CviAII CATG 1 cut(s) 525
DdeI CTNAG 1 cut(s) 180
DpnI GATC 2 cut(s) 509, 557
DpnII GATC 2 cut(s) 507, 555
Eam1104I CTCTTC 2 cut(s) 494, 662
EarI CTCTTC 2 cut(s) 494, 662
EciI GGCGGA 1 cut(s) 55
Eco31I GGTCTC 2 cut(s) 323, 667
Eco32I GATATC 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 2 cut(s) 320, 378
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 450
FaeI CATG 1 cut(s) 528
FaiI YATR 9 cut(s) 87, 202, 236, 258, 300, 405, 518, 520, 526
FatI CATG 1 cut(s) 524
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 114, 459
FokI GGATG 2 cut(s) 597, 647
Fsp4HI GCNGC 2 cut(s) 114, 459
FspBI CTAG 2 cut(s) 455, 464
GluI GCNGC 2 cut(s) 114, 459
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 1 cut(s) 266
HgaI GACGC 1 cut(s) 13
Hin1II CATG 1 cut(s) 528
HincII GTYRAC 1 cut(s) 653
HindII GTYRAC 1 cut(s) 653
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 6 cut(s) 31, 231, 274, 338, 502, 576
Hpy166II GTNNAC 5 cut(s) 58, 124, 393, 444, 653
Hpy188I TCNGA 4 cut(s) 82, 181, 507, 672
Hpy188III TCNNGA 2 cut(s) 445, 595
Hpy8I GTNNAC 5 cut(s) 58, 124, 393, 444, 653
HpyAV CCTTC 1 cut(s) 561
HpyCH4III ACNGT 2 cut(s) 26, 678
HpyCH4V TGCA 7 cut(s) 137, 172, 349, 412, 431, 461, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 528
Kzo9I GATC 2 cut(s) 507, 555
Lsp1109I GCAGC 2 cut(s) 100, 445
MaeI CTAG 2 cut(s) 455, 464
MalI GATC 2 cut(s) 509, 557
MboI GATC 2 cut(s) 507, 555
MboII GAAGA 3 cut(s) 10, 511, 649
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 1 cut(s) 600
MlyI GAGTC 3 cut(s) 268, 511, 585
MnlI CCTC 5 cut(s) 57, 112, 372, 374, 674
MseI TTAA 2 cut(s) 144, 473
MslI CAYNNNNRTG 1 cut(s) 475
MspA1I CMGCKG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 2 cut(s) 53, 335
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 2 cut(s) 507, 555
NlaIII CATG 1 cut(s) 528
NlaIV GGNNCC 2 cut(s) 100, 360
NspI RCATGY 1 cut(s) 528
PaeR7I CTCGAG 1 cut(s) 378
PciI ACATGT 1 cut(s) 524
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 3 cut(s) 31, 231, 338
PkrI GCNGC 2 cut(s) 115, 460
PleI GAGTC 3 cut(s) 268, 510, 584
PpsI GAGTC 3 cut(s) 268, 510, 584
PscI ACATGT 1 cut(s) 524
PshBI ATTAAT 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 100, 360
PspPI GGNCC 2 cut(s) 44, 265
PspXI VCTCGAGB 1 cut(s) 378
PvuII CAGCTG 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 475
SaqAI TTAA 2 cut(s) 144, 473
SatI GCNGC 2 cut(s) 114, 459
Sau3AI GATC 2 cut(s) 507, 555
Sau96I GGNCC 2 cut(s) 44, 265
SchI GAGTC 3 cut(s) 268, 511, 585
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 379
Sfr274I CTCGAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 475
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 1 cut(s) 600
SsiI CCGC 3 cut(s) 53, 66, 335
SspMI CTAG 2 cut(s) 455, 464
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 26, 678
TaqI TCGA 2 cut(s) 379, 554
TaqII GACCGA 1 cut(s) 32
TasI AATT 1 cut(s) 600
TfiI GAWTC 3 cut(s) 31, 231, 338
Tru1I TTAA 2 cut(s) 144, 473
Tru9I TTAA 2 cut(s) 144, 473
TseI GCWGC 2 cut(s) 113, 458
TspDTI ATGAA 3 cut(s) 223, 459, 649
TspGWI ACGGA 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 473
XceI RCATGY 1 cut(s) 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XhoI CTCGAG 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 57
XspI CTAG 2 cut(s) 455, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.