Rh6BG413700

Transmembrane protein 147-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016163
Physical Location & Seq
Reverse (-)
63878369 .. 63881019
2651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG413700.1

Sequence Viewer

Length: 618 bp
ATGACGGTGTTTCACTTCTTCAACTGTGCGATTCTGACGTTTGGTCCTCACGCCGTCTACTACTCCGCCACTCCTCTATCGGAGTATGACACACTCGGCACCTCCATTAAAGCAGCTGTGGTTTATCTCGGAACAGCTCTAGTCAAGCTTGTTTGTTTGGCTACTTTTCTCAAGGTATCTGATAATGAAAGCTTCGATCCATATCAGGAATTGTTGAAAGCTTTGATCGGTTTCATAGATGTTGCTGGCCTTTACTTTGCTTTGACCCAGTTGACCCATAGGAACATTTCTCAAAATCATAAATTTCAAGCAGTGGGACTTGGGTGGGCTTTTGCTGATTCGGTTCTCCATAGATTGGCACCTCTGTGGGTGGGTGCCAGAGGACTAGAATTTACCTGGGATTACATTCTGCAAGGCCTTGAGGCAAATGCAAATCTGGTTTTGAGCATATCCCTTGCTGCATTGGGATCTTTGATGTGGCTTCGCAAAAACAAGCCTAAGACGCTGATTCCTATAATATACATCTGTGCTGGGATTGTGGCAACCATGCCATCTATCACAAGGTCTGCTAACTTTCCTAAATTCTATTATCACCATTACCACAGAAAAAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2053

Protein Analysis

205

Amino Acids

22.93

Weight (kDa)

9.22

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2053 PF09767 2 - 161 8.6e-60 Predicted membrane protein (DUF2053)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47640
fragaria_vesca FvH4_2g40630
malus_domestica MD08G1039400.v1.1 MD15G1034100.v1.1
prunus_persica Prupe.1G387900_v2.0.a1
pyrus_communis pycom08g03150 pycom15g03140
rosa_chinensis RchiOBHm_Chr6g0300041
rosa_laevigata RLG00000011370
rosa_multiflora Rmu_sc0010665.1_g000003
rosa_roxburghii Rroxscaffold_7G00168170
rosa_rugosa Rorug06G0293800
rosa_samantha Rh6BG413700 Rh6DG406400
rosa_wichuraiana Rw6G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 98, 358, 374
AccB7I CCANNNNNTGG 1 cut(s) 355
AccI GTMKAC 1 cut(s) 57
AciI CCGC 1 cut(s) 66
AclWI GGATC 2 cut(s) 191, 475
AcsI RAATTY 3 cut(s) 302, 389, 581
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 3 cut(s) 22, 217, 308
AhdI GACNNNNNGTC 1 cut(s) 42
AjnI CCWGG 1 cut(s) 395
AleI CACNNNNGTG 1 cut(s) 364
AluBI AGCT 5 cut(s) 116, 137, 148, 192, 221
AluI AGCT 5 cut(s) 116, 137, 148, 192, 221
AlwI GGATC 2 cut(s) 191, 475
AoxI GGCC 2 cut(s) 247, 415
ApeKI GCWGC 2 cut(s) 113, 458
ApoI RAATTY 3 cut(s) 302, 389, 581
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 584
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 3 cut(s) 98, 358, 374
BbvI GCAGC 2 cut(s) 125, 445
BccI CCATC 1 cut(s) 559
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 397
BfaI CTAG 2 cut(s) 140, 386
BisI GCNGC 2 cut(s) 114, 459
BlsI GCNGC 2 cut(s) 115, 460
Bme1390I CCNGG 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 3 cut(s) 100, 360, 376
BmrFI CCNGG 1 cut(s) 397
BmrI ACTGGG 1 cut(s) 262
BmuI ACTGGG 1 cut(s) 262
BpuEI CTTGAG 2 cut(s) 155, 440
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 396
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 268
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 396
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 355
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 125, 445
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 2 cut(s) 249, 417
BshNI GGYRCC 3 cut(s) 98, 358, 374
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 2 cut(s) 249, 417
Bsp143I GATC 3 cut(s) 196, 225, 467
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 249, 417
BspLI GGNNCC 3 cut(s) 100, 360, 376
BspPI GGATC 2 cut(s) 191, 475
BspT107I GGYRCC 3 cut(s) 98, 358, 374
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 3 cut(s) 196, 225, 467
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 2 cut(s) 7, 26
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 498
BstKTI GATC 3 cut(s) 199, 228, 470
BstMBI GATC 3 cut(s) 196, 225, 467
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstNI CCWGG 1 cut(s) 397
BstSCI CCNGG 1 cut(s) 395
BstV1I GCAGC 2 cut(s) 125, 445
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 2 cut(s) 249, 417
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 511
CviAII CATG 1 cut(s) 547
DdeI CTNAG 1 cut(s) 498
DpnI GATC 3 cut(s) 198, 227, 469
DpnII GATC 3 cut(s) 196, 225, 467
DriI GACNNNNNGTC 1 cut(s) 42
Eam1105I GACNNNNNGTC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 395
FaeI CATG 1 cut(s) 550
FaqI GGGAC 1 cut(s) 330
FatI CATG 1 cut(s) 546
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 114, 459
Fsp4HI GCNGC 2 cut(s) 114, 459
FspBI CTAG 2 cut(s) 140, 386
GluI GCNGC 2 cut(s) 114, 459
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 2 cut(s) 249, 417
HgaI GACGC 1 cut(s) 511
Hin1II CATG 1 cut(s) 550
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HindIII AAGCTT 3 cut(s) 146, 190, 219
HinfI GANTC 3 cut(s) 31, 338, 508
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 2 cut(s) 58, 273
Hpy188I TCNGA 4 cut(s) 36, 82, 131, 181
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 2 cut(s) 58, 273
HpyCH4III ACNGT 2 cut(s) 7, 26
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 412, 431, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 1 cut(s) 550
Kzo9I GATC 3 cut(s) 196, 225, 467
LpnPI CCDG 8 cut(s) 191, 231, 281, 382, 391, 409, 422, 516
Lsp1109I GCAGC 2 cut(s) 125, 445
MaeI CTAG 2 cut(s) 140, 386
MaeII ACGT 1 cut(s) 38
MalI GATC 3 cut(s) 198, 227, 469
MboI GATC 3 cut(s) 196, 225, 467
MboII GAAGA 1 cut(s) 10
MflI RGATCY 1 cut(s) 467
MluCI AATT 4 cut(s) 209, 302, 389, 581
MnlI CCTC 6 cut(s) 57, 84, 112, 372, 374, 415
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 364
MspA1I CMGCKG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 397
MvaI CCWGG 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 502
NdeII GATC 3 cut(s) 196, 225, 467
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 3 cut(s) 100, 360, 376
NmeAIII GCCGAG 1 cut(s) 75
OliI CACNNNNGTG 1 cut(s) 364
PceI AGGCCT 1 cut(s) 417
PfeI GAWTC 3 cut(s) 31, 338, 508
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 2 cut(s) 115, 460
Psp6I CCWGG 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 3 cut(s) 100, 360, 376
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 114, 459
Sau3AI GATC 3 cut(s) 196, 225, 467
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 397
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 170, 419
SmoI CTYRAG 2 cut(s) 170, 419
Sse9I AATT 4 cut(s) 209, 302, 389, 581
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 1 cut(s) 66
SspMI CTAG 2 cut(s) 140, 386
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 7, 26
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 195
TasI AATT 4 cut(s) 209, 302, 389, 581
TfiI GAWTC 3 cut(s) 31, 338, 508
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 318
TseI GCWGC 2 cut(s) 113, 458
TspDTI ATGAA 2 cut(s) 201, 223
TspRI CASTG 1 cut(s) 318
Van91I CCANNNNNTGG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 3 cut(s) 302, 389, 581
XmiI GTMKAC 1 cut(s) 57
XspI CTAG 2 cut(s) 140, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.