MD15G1034100.v1.1

Transmembrane protein 147-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016163
Physical Location & Seq
Forward (+)
2410097 .. 2412334
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1034100.v1.1.491

Sequence Viewer

Length: 702 bp
ATGACGGTGTTTCACTTCTTCAACTGCGCCATTCTGACGTTCGGCCCTCACGCCGTCTACTACTCCGCCACGCCGCTATCGGAGTACGATACGCTCGGTACTTCCGTCAAAGCAGCTTTGGTTTATCTCGGAACAGCTTTGGTGAAGCTGGTTTGTTTGGCAACTTTTCTGAAGGTATCTGACAATGAGAGCTTCGATCCGTATCAGGAATTGTTGAAAGCTTTAATCGGTTTTATAGACGTTGCTGGACTTTACTATGCTTTGACTCAGCTGACCCACAGGAATATCTCTCAGAATCATAAATTTCAAGCTGTGGGACTTGGATGGGCTTTTGCTGATTCTGTTCTCCATAGATTGGCACCGCTATGGGTGGGTGCTAGAGGACTAGAATTCACCTGGGATTACATTCTCCAAGGCCTTGAAGCAAATGCCAATCTGGTCTTGAGTATATCACTTGCTGCATTTGGATCTTTGATGTGGCTTCGAAAAAACAAGCCTAAGATTATGATTCCTTTAATATATGTATGTGCAGGAGTTGTGGCAACCATGCCATCTATCACAAGCTATCTGAGGCGAGGCCTGGGTTGGCAATTTCCGGATGTGGTAGTGTTTGAACTAGGTACCTCTCTATTGATGGCCCTCATCAGTTGGCAGCTCTTTGCTTATTGTCAGAGACCCTCTGCCCGAAACAACCAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2053

Protein Analysis

234

Amino Acids

25.91

Weight (kDa)

8.65

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2053 PF09767 2 - 161 1.5e-59 Predicted membrane protein (DUF2053)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47640
fragaria_vesca FvH4_2g40630
malus_domestica MD08G1039400.v1.1 MD15G1034100.v1.1
prunus_persica Prupe.1G387900_v2.0.a1
pyrus_communis pycom08g03150 pycom15g03140
rosa_chinensis RchiOBHm_Chr6g0300041
rosa_laevigata RLG00000011370
rosa_multiflora Rmu_sc0010665.1_g000003
rosa_roxburghii Rroxscaffold_7G00168170
rosa_rugosa Rorug06G0293800
rosa_samantha Rh6BG413700 Rh6DG406400
rosa_wichuraiana Rw6G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 620
AccB1I GGYRCC 2 cut(s) 358, 620
AccB7I CCANNNNNTGG 1 cut(s) 355
AccI GTMKAC 1 cut(s) 57
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 3 cut(s) 66, 74, 362
AclWI GGATC 2 cut(s) 191, 475
AcsI RAATTY 2 cut(s) 302, 389
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 3 cut(s) 86, 100, 622
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 5 cut(s) 22, 217, 308, 422, 614
AjnI CCWGG 2 cut(s) 395, 579
AluBI AGCT 9 cut(s) 116, 137, 148, 192, 221, 271, 311, 564, 655
AluI AGCT 9 cut(s) 116, 137, 148, 192, 221, 271, 311, 564, 655
Alw26I GTCTC 1 cut(s) 667
AlwI GGATC 2 cut(s) 191, 475
Aor13HI TCCGGA 1 cut(s) 595
AoxI GGCC 4 cut(s) 43, 415, 577, 636
ApeKI GCWGC 3 cut(s) 113, 458, 652
ApoI RAATTY 2 cut(s) 302, 389
Asp718I GGTACC 1 cut(s) 620
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 44, 637
AsuHPI GGTGA 2 cut(s) 154, 385
AsuII TTCGAA 1 cut(s) 484
BaeI ACNNNNGTAYC 2 cut(s) 90, 123
BanI GGYRCC 2 cut(s) 358, 620
BbvI GCAGC 3 cut(s) 125, 445, 664
BccI CCATC 3 cut(s) 318, 559, 628
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 397, 581
BcoDI GTCTC 1 cut(s) 667
BfaI CTAG 3 cut(s) 378, 386, 617
BisI GCNGC 4 cut(s) 74, 114, 459, 653
BlsI GCNGC 4 cut(s) 75, 115, 460, 654
Bme1390I CCNGG 2 cut(s) 397, 581
BmgT120I GGNCC 2 cut(s) 44, 637
BmiI GGNNCC 2 cut(s) 360, 622
BmrFI CCNGG 2 cut(s) 397, 581
Bpu14I TTCGAA 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 667
BsaJI CCNNGG 3 cut(s) 396, 412, 580
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse8I GATNNNNATC 1 cut(s) 201
BseAI TCCGGA 1 cut(s) 595
BseBI CCWGG 2 cut(s) 397, 581
BseDI CCNNGG 3 cut(s) 396, 412, 580
BseGI GGATG 2 cut(s) 329, 604
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 3 cut(s) 281, 305, 560
BseXI GCAGC 3 cut(s) 125, 445, 664
BsgI GTGCAG 1 cut(s) 549
BshFI GGCC 4 cut(s) 45, 417, 579, 638
BshNI GGYRCC 2 cut(s) 358, 620
BsiSI CCGG 1 cut(s) 596
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 667
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 4 cut(s) 45, 417, 579, 638
Bso31I GGTCTC 1 cut(s) 667
Bsp119I TTCGAA 1 cut(s) 484
Bsp13I TCCGGA 1 cut(s) 595
Bsp143I GATC 2 cut(s) 196, 467
BspACI CCGC 3 cut(s) 66, 74, 362
BspANI GGCC 4 cut(s) 45, 417, 579, 638
BspCNI CTCAG 3 cut(s) 280, 304, 561
BspEI TCCGGA 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 360, 622
BspPI GGATC 2 cut(s) 191, 475
BspT104I TTCGAA 1 cut(s) 484
BspT107I GGYRCC 2 cut(s) 358, 620
BspTNI GGTCTC 1 cut(s) 667
BssECI CCNNGG 3 cut(s) 396, 412, 580
BssMI GATC 2 cut(s) 196, 467
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 2 cut(s) 397, 581
Bst4CI ACNGT 1 cut(s) 7
BstBI TTCGAA 1 cut(s) 484
BstDEI CTNAG 4 cut(s) 267, 291, 498, 569
BstF5I GGATG 2 cut(s) 329, 604
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 199, 470
BstMAI GTCTC 1 cut(s) 667
BstMBI GATC 2 cut(s) 196, 467
BstNI CCWGG 2 cut(s) 397, 581
BstSCI CCNGG 2 cut(s) 395, 579
BstV1I GCAGC 3 cut(s) 125, 445, 664
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 4 cut(s) 45, 417, 579, 638
BtsCI GGATG 2 cut(s) 329, 604
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 44, 637
Csp6I GTAC 3 cut(s) 85, 99, 621
CviAII CATG 1 cut(s) 547
CviQI GTAC 3 cut(s) 85, 99, 621
DdeI CTNAG 4 cut(s) 267, 291, 498, 569
DpnI GATC 2 cut(s) 198, 469
DpnII GATC 2 cut(s) 196, 467
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 412
Eco147I AGGCCT 2 cut(s) 417, 579
Eco31I GGTCTC 1 cut(s) 667
Eco57I CTGAAG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 395, 579
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 1 cut(s) 550
FaqI GGGAC 1 cut(s) 330
FatI CATG 1 cut(s) 546
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 4 cut(s) 74, 114, 459, 653
FokI GGATG 2 cut(s) 336, 611
Fsp4HI GCNGC 4 cut(s) 74, 114, 459, 653
FspBI CTAG 3 cut(s) 378, 386, 617
GlaI GCGC 1 cut(s) 28
GluI GCNGC 4 cut(s) 74, 114, 459, 653
HaeIII GGCC 4 cut(s) 45, 417, 579, 638
HapII CCGG 1 cut(s) 596
HhaI GCGC 1 cut(s) 29
Hin1II CATG 1 cut(s) 550
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 4 cut(s) 265, 295, 338, 508
HpaII CCGG 1 cut(s) 596
HphI GGTGA 2 cut(s) 154, 385
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 8 cut(s) 36, 82, 131, 171, 181, 294, 570, 672
Hpy188III TCNNGA 3 cut(s) 206, 442, 596
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 2 cut(s) 38, 240
HpyCH4V TGCA 2 cut(s) 461, 530
HpyF3I CTNAG 4 cut(s) 267, 291, 498, 569
HpySE526I ACGT 2 cut(s) 38, 240
Hsp92II CATG 1 cut(s) 550
HspAI GCGC 1 cut(s) 27
Kpn2I TCCGGA 1 cut(s) 595
KpnI GGTACC 1 cut(s) 624
Kzo9I GATC 2 cut(s) 196, 467
Lsp1109I GCAGC 3 cut(s) 125, 445, 664
MaeI CTAG 3 cut(s) 378, 386, 617
MaeII ACGT 2 cut(s) 38, 240
MalI GATC 2 cut(s) 198, 469
MboI GATC 2 cut(s) 196, 467
MboII GAAGA 1 cut(s) 10
MflI RGATCY 1 cut(s) 467
MluCI AATT 4 cut(s) 209, 302, 389, 590
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 7 cut(s) 57, 374, 564, 569, 634, 650, 688
MroI TCCGGA 1 cut(s) 595
MseI TTAA 2 cut(s) 224, 515
MslI CAYNNNNRTG 1 cut(s) 364
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 2 cut(s) 397, 581
MvaI CCWGG 2 cut(s) 397, 581
NdeII GATC 2 cut(s) 196, 467
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 2 cut(s) 360, 622
NspV TTCGAA 1 cut(s) 484
PceI AGGCCT 2 cut(s) 417, 579
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 3 cut(s) 295, 338, 508
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 4 cut(s) 75, 115, 460, 654
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 395, 579
PspGI CCWGG 2 cut(s) 395, 579
PspN4I GGNNCC 2 cut(s) 360, 622
PspPI GGNCC 2 cut(s) 44, 637
PsuI RGATCY 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 3 cut(s) 86, 100, 622
RsaNI GTAC 3 cut(s) 85, 99, 621
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 2 cut(s) 224, 515
SatI GCNGC 4 cut(s) 74, 114, 459, 653
Sau3AI GATC 2 cut(s) 196, 467
Sau96I GGNCC 2 cut(s) 44, 637
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 397, 581
SfuI TTCGAA 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 4 cut(s) 209, 302, 389, 590
SseBI AGGCCT 2 cut(s) 417, 579
SsiI CCGC 3 cut(s) 66, 74, 362
SspMI CTAG 3 cut(s) 378, 386, 617
StuI AGGCCT 2 cut(s) 417, 579
StyD4I CCNGG 2 cut(s) 395, 579
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 2 cut(s) 41, 243
TaqI TCGA 2 cut(s) 195, 484
TasI AATT 4 cut(s) 209, 302, 389, 590
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 3 cut(s) 295, 338, 508
Tru1I TTAA 2 cut(s) 224, 515
Tru9I TTAA 2 cut(s) 224, 515
TseI GCWGC 3 cut(s) 113, 458, 652
TspGWI ACGGA 2 cut(s) 94, 189
Van91I CCANNNNNTGG 1 cut(s) 355
XapI RAATTY 2 cut(s) 302, 389
XmiI GTMKAC 1 cut(s) 57
XspI CTAG 3 cut(s) 378, 386, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.