Prupe.1G387900_v2.0.a1

Transmembrane protein 147-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016163
Physical Location & Seq
Forward (+)
34697239 .. 34699524
2286 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G387900.1

Sequence Viewer

Length: 687 bp
ATGACGGTGTTTCACTTCTTCAACTGCGCGATTCTGACATTTGGCCCTCACGCCGTTTACTACTCCGCTACCCCCCTATCGGAGTACGATACACTTGGGACCTCTGTCAAAGCAGCTCTTGTTTATCTGGGAACAGCTTTAGTGAAGCTCGTTTGTCTGGCCACTTTTCTGAAGGTATCCGACAATGAAAGCTTCGATCCATATCAGGAATTTTTGAAAGCTCTTATTGGTTTTATAGACGTTGCTGGCCTTTACTTTGCTCTGACTCAGTTGACCCACAGGAACATCTCTCAAAATCATAAATTCCAAGCAGTGGGACTTGGATGGGCTTTTGCTGATTCCGTTCTCCATAGATTGGCACCGCTGTGGGTGGGTGCTAGAGGACTAGAATTTACCTGGGATTACATTCTTCAAGGCCTTGAAGCAAATGCCAATCTGGTCTTGAGCATCTCCCTTGCTGCATTGGGCTCTTTGATGTGGCTGCGGAAAAACAAGCCTAAGACGCTGATTCCTATAATATACACCTGTGCAGGGATCGTGGCAACCATGCCATCTATCACAAGCTATCTGAGGCGAGGCCTGGGTTGGCACTTTCCAGAGGTTGTAGGGTTTCAACTCTTTACCTCTCTGGTCATGGCCTTCATCAGTTGGCAGCTCTTTGCTGCATGTCAGAGACCTTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2053

Protein Analysis

229

Amino Acids

25.28

Weight (kDa)

8.67

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47640
fragaria_vesca FvH4_2g40630
malus_domestica MD08G1039400.v1.1 MD15G1034100.v1.1
prunus_persica Prupe.1G387900_v2.0.a1
pyrus_communis pycom08g03150 pycom15g03140
rosa_chinensis RchiOBHm_Chr6g0300041
rosa_laevigata RLG00000011370
rosa_multiflora Rmu_sc0010665.1_g000003
rosa_roxburghii Rroxscaffold_7G00168170
rosa_rugosa Rorug06G0293800
rosa_samantha Rh6BG413700 Rh6DG406400
rosa_wichuraiana Rw6G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AccB7I CCANNNNNTGG 2 cut(s) 313, 355
AccII CGCG 1 cut(s) 29
AciI CCGC 3 cut(s) 66, 362, 484
AclWI GGATC 2 cut(s) 191, 542
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 3 cut(s) 209, 302, 389
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 4 cut(s) 79, 313, 355, 531
AgsI TTSAA 5 cut(s) 22, 217, 413, 422, 614
AjnI CCWGG 2 cut(s) 395, 579
AleI CACNNNNGTG 1 cut(s) 364
AluBI AGCT 7 cut(s) 116, 137, 148, 192, 221, 564, 655
AluI AGCT 7 cut(s) 116, 137, 148, 192, 221, 564, 655
Alw26I GTCTC 1 cut(s) 667
AlwI GGATC 2 cut(s) 191, 542
AoxI GGCC 6 cut(s) 43, 159, 247, 415, 577, 636
ApeKI GCWGC 5 cut(s) 113, 458, 481, 652, 662
ApoI RAATTY 3 cut(s) 209, 302, 389
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 44, 99
AvaII GGWCC 1 cut(s) 99
BalI TGGCCA 1 cut(s) 161
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 470
BbvI GCAGC 5 cut(s) 125, 445, 468, 649, 664
BccI CCATC 2 cut(s) 318, 559
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 397, 581
BciVI GTATCC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 667
BfaI CTAG 2 cut(s) 378, 386
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 5 cut(s) 114, 459, 482, 653, 663
BlsI GCNGC 5 cut(s) 115, 460, 483, 654, 664
Bme1390I CCNGG 2 cut(s) 397, 581
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 44, 99
BmiI GGNNCC 2 cut(s) 100, 360
BmrFI CCNGG 2 cut(s) 397, 581
BmsI GCATC 1 cut(s) 456
BoxI GACNNNNGTC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 667
BsaJI CCNNGG 2 cut(s) 396, 580
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 313, 355, 531
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 2 cut(s) 397, 581
BseDI CCNNGG 2 cut(s) 396, 580
BseGI GGATG 1 cut(s) 329
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 4 cut(s) 79, 313, 355, 531
BseMII CTCAG 2 cut(s) 281, 560
BseXI GCAGC 5 cut(s) 125, 445, 468, 649, 664
BsgI GTGCAG 1 cut(s) 549
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 6 cut(s) 45, 161, 249, 417, 579, 638
BshNI GGYRCC 1 cut(s) 358
BslFI GGGAC 2 cut(s) 112, 330
BslI CCNNNNNNNGG 4 cut(s) 79, 313, 355, 531
BsmAI GTCTC 1 cut(s) 667
BsmFI GGGAC 2 cut(s) 112, 330
BsnI GGCC 6 cut(s) 45, 161, 249, 417, 579, 638
Bso31I GGTCTC 1 cut(s) 667
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 2 cut(s) 196, 534
BspACI CCGC 3 cut(s) 66, 362, 484
BspANI GGCC 6 cut(s) 45, 161, 249, 417, 579, 638
BspCNI CTCAG 2 cut(s) 280, 561
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 100, 360
BspPI GGATC 2 cut(s) 191, 542
BspT107I GGYRCC 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 667
BssECI CCNNGG 2 cut(s) 396, 580
BssMI GATC 2 cut(s) 196, 534
Bst2UI CCWGG 2 cut(s) 397, 581
Bst4CI ACNGT 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 3 cut(s) 267, 498, 569
BstF5I GGATG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 199, 537
BstMAI GTCTC 1 cut(s) 667
BstMBI GATC 2 cut(s) 196, 534
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstNI CCWGG 2 cut(s) 397, 581
BstNSI RCATGY 1 cut(s) 669
BstPAI GACNNNNGTC 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 395, 579
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 5 cut(s) 125, 445, 468, 649, 664
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 6 cut(s) 45, 161, 249, 417, 579, 638
BtsCI GGATG 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 44, 99
CseI GACGC 1 cut(s) 511
Csp6I GTAC 1 cut(s) 85
CviAII CATG 3 cut(s) 547, 634, 666
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 3 cut(s) 267, 498, 569
DpnI GATC 2 cut(s) 198, 536
DpnII GATC 2 cut(s) 196, 534
EaeI YGGCCR 1 cut(s) 159
Eco147I AGGCCT 2 cut(s) 417, 579
Eco24I GRGCYC 1 cut(s) 470
Eco31I GGTCTC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 99
EcoRII CCWGG 2 cut(s) 395, 579
EcoT38I GRGCYC 1 cut(s) 470
FaeI CATG 3 cut(s) 550, 637, 669
FaiI YATR 9 cut(s) 202, 236, 300, 351, 515, 520, 548, 635, 667
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FaqI GGGAC 2 cut(s) 112, 330
FatI CATG 3 cut(s) 546, 633, 665
Fnu4HI GCNGC 5 cut(s) 114, 459, 482, 653, 663
FokI GGATG 1 cut(s) 336
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 5 cut(s) 114, 459, 482, 653, 663
FspBI CTAG 2 cut(s) 378, 386
GlaI GCGC 1 cut(s) 28
GluI GCNGC 5 cut(s) 114, 459, 482, 653, 663
HaeIII GGCC 6 cut(s) 45, 161, 249, 417, 579, 638
HgaI GACGC 1 cut(s) 511
HhaI GCGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 550, 637, 669
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 4 cut(s) 31, 265, 338, 508
Hpy166II GTNNAC 2 cut(s) 58, 273
Hpy188I TCNGA 7 cut(s) 36, 82, 171, 181, 264, 570, 672
Hpy188III TCNNGA 3 cut(s) 206, 442, 596
Hpy8I GTNNAC 2 cut(s) 58, 273
HpyAV CCTTC 3 cut(s) 166, 649, 687
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 461, 530, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 3 cut(s) 267, 498, 569
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 3 cut(s) 550, 637, 669
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 196, 534
Lsp1109I GCAGC 5 cut(s) 125, 445, 468, 649, 664
LweI GCATC 1 cut(s) 456
MaeI CTAG 2 cut(s) 378, 386
MaeII ACGT 1 cut(s) 240
MalI GATC 2 cut(s) 198, 536
MboI GATC 2 cut(s) 196, 534
MboII GAAGA 2 cut(s) 10, 401
MhlI GDGCHC 1 cut(s) 470
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 3 cut(s) 209, 302, 389
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 7 cut(s) 57, 112, 374, 564, 569, 592, 634
Mox20I TGGCCA 1 cut(s) 161
MscI TGGCCA 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 364
Msp20I TGGCCA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 364
MspR9I CCNGG 2 cut(s) 397, 581
MvaI CCWGG 2 cut(s) 397, 581
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 502
NdeII GATC 2 cut(s) 196, 534
NlaIII CATG 3 cut(s) 550, 637, 669
NlaIV GGNNCC 2 cut(s) 100, 360
NspI RCATGY 1 cut(s) 669
OliI CACNNNNGTG 1 cut(s) 364
PceI AGGCCT 2 cut(s) 417, 579
PfeI GAWTC 3 cut(s) 31, 338, 508
PflMI CCANNNNNTGG 2 cut(s) 313, 355
PkrI GCNGC 5 cut(s) 115, 460, 483, 654, 664
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 99
PshAI GACNNNNGTC 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 395, 579
PspGI CCWGG 2 cut(s) 395, 579
PspN4I GGNNCC 2 cut(s) 100, 360
PspPI GGNCC 2 cut(s) 44, 99
PspPPI RGGWCCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 364
SatI GCNGC 5 cut(s) 114, 459, 482, 653, 663
Sau3AI GATC 2 cut(s) 196, 534
Sau96I GGNCC 2 cut(s) 44, 99
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 397, 581
SduI GDGCHC 1 cut(s) 470
SfaNI GCATC 1 cut(s) 456
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 3 cut(s) 209, 302, 389
SseBI AGGCCT 2 cut(s) 417, 579
SsiI CCGC 3 cut(s) 66, 362, 484
SspMI CTAG 2 cut(s) 378, 386
StuI AGGCCT 2 cut(s) 417, 579
StyD4I CCNGG 2 cut(s) 395, 579
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 195
TasI AATT 3 cut(s) 209, 302, 389
TfiI GAWTC 3 cut(s) 31, 338, 508
TscAI CASTG 1 cut(s) 318
TseI GCWGC 5 cut(s) 113, 458, 481, 652, 662
TspDTI ATGAA 2 cut(s) 201, 631
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 1 cut(s) 318
Van91I CCANNNNNTGG 2 cut(s) 313, 355
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 3 cut(s) 209, 302, 389
XceI RCATGY 1 cut(s) 669
XspI CTAG 2 cut(s) 378, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.