FvH4_2g40630

Transmembrane protein 147-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016163
Physical Location & Seq
Forward (+)
28925357 .. 28928208
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40630.t1

Sequence Viewer

Length: 687 bp
ATGACGGTGTTTCACTTCTTCAACTGCGCCATTCTGACTTTTGGTCCTCACGCCGTTTACTACTCCGCCACTCCCCTATCGGAGTACGATACGCTCGGTACCTCCATCAAAACAGGTGTGGTTTATCTCGGAACAGCTCTACTCAAGCTTGTTTGTTTGGCTACTTTTCTCAAGGTGTCTGATAATGAAAGCTTCGATCCATATCAGGAATTGTTGAAAGCGTTGATCGGTTTCATAGATGTTGCTGGCCTTTACTTTGCTTTGACGCAGTTGACGCATAGGAACATCTCTCAGAATCATAAATTTCAAGCAGTGGGACTCGGGTGGGCTTTTGCCGATTCGGTTCTCCATAGATTGGCGCCTCTTTGGGTGGGTGCCAGAGGACTAGAATTTACCTGGGATTACATTCTGCAAGGTCTTGAGGCAAATGCAAATCTGGTTTTGAGCATATCCCTTGCTGCATTGGGATCTTTGATGTGGCTCCGCAAAAACAAGCCTAAGACACTGATTCCTATAATATACATCTGTGCTGGGATTGTGGCTACCATGCCATCTATCACAAGCTATCTAAGGCGTGGACTGGGGTGGCACTTTCCGGAGGTGGTAGGATTTCAACTGTTTACCTCTCTGGTCATGGCATTCATCAGTTGGCAGCTTTTTGCTGCATGTCAGAGGCCCTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2053

Protein Analysis

229

Amino Acids

25.29

Weight (kDa)

8.67

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2053 PF09767 2 - 161 4.8e-59 Predicted membrane protein (DUF2053)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47640
fragaria_vesca FvH4_2g40630
malus_domestica MD08G1039400.v1.1 MD15G1034100.v1.1
prunus_persica Prupe.1G387900_v2.0.a1
pyrus_communis pycom08g03150 pycom15g03140
rosa_chinensis RchiOBHm_Chr6g0300041
rosa_laevigata RLG00000011370
rosa_multiflora Rmu_sc0010665.1_g000003
rosa_roxburghii Rroxscaffold_7G00168170
rosa_rugosa Rorug06G0293800
rosa_samantha Rh6BG413700 Rh6DG406400
rosa_wichuraiana Rw6G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 98
AccB1I GGYRCC 3 cut(s) 98, 358, 374
AccB7I CCANNNNNTGG 1 cut(s) 355
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 2 cut(s) 66, 484
AclWI GGATC 2 cut(s) 191, 475
AcsI RAATTY 2 cut(s) 302, 389
AcyI GRCGYC 1 cut(s) 359
AfaI GTAC 2 cut(s) 86, 100
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 4 cut(s) 22, 217, 308, 614
AhdI GACNNNNNGTC 1 cut(s) 42
AjnI CCWGG 1 cut(s) 395
AluBI AGCT 5 cut(s) 137, 148, 192, 564, 655
AluI AGCT 5 cut(s) 137, 148, 192, 564, 655
AlwI GGATC 2 cut(s) 191, 475
Ama87I CYCGRG 1 cut(s) 320
Aor13HI TCCGGA 1 cut(s) 595
AoxI GGCC 2 cut(s) 247, 674
ApeKI GCWGC 3 cut(s) 458, 652, 662
ApoI RAATTY 2 cut(s) 302, 389
Asp718I GGTACC 1 cut(s) 98
AspLEI GCGC 2 cut(s) 29, 361
AspS9I GGNCC 2 cut(s) 44, 675
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 3 cut(s) 98, 358, 374
BbvI GCAGC 3 cut(s) 445, 649, 664
BccI CCATC 2 cut(s) 113, 559
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 397
BfaI CTAG 1 cut(s) 386
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 3 cut(s) 459, 653, 663
BlsI GCNGC 3 cut(s) 460, 654, 664
Bme1390I CCNGG 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 44, 675
BmiI GGNNCC 4 cut(s) 100, 360, 376, 482
BmrFI CCNGG 1 cut(s) 397
BmrI ACTGGG 1 cut(s) 590
BmuI ACTGGG 1 cut(s) 590
BpuEI CTTGAG 3 cut(s) 128, 155, 440
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 585
Bse8I GATNNNNATC 1 cut(s) 201
BseAI TCCGGA 1 cut(s) 595
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 396
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 585
BseXI GCAGC 3 cut(s) 445, 649, 664
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 2 cut(s) 249, 676
BshNI GGYRCC 3 cut(s) 98, 358, 374
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 596
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 2 cut(s) 249, 676
BsoBI CYCGRG 1 cut(s) 320
Bsp13I TCCGGA 1 cut(s) 595
Bsp143I GATC 3 cut(s) 196, 225, 467
BspACI CCGC 2 cut(s) 66, 484
BspANI GGCC 2 cut(s) 249, 676
BspCNI CTCAG 1 cut(s) 304
BspEI TCCGGA 1 cut(s) 595
BspLI GGNNCC 4 cut(s) 100, 360, 376, 482
BspPI GGATC 2 cut(s) 191, 475
BspT107I GGYRCC 3 cut(s) 98, 358, 374
BsrI ACTGG 1 cut(s) 585
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 3 cut(s) 196, 225, 467
BssNI GRCGYC 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 2 cut(s) 7, 618
BstACI GRCGYC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 3 cut(s) 291, 498, 569
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 29, 361
BstKTI GATC 3 cut(s) 199, 228, 470
BstMBI GATC 3 cut(s) 196, 225, 467
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstNI CCWGG 1 cut(s) 397
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 1 cut(s) 395
BstV1I GCAGC 3 cut(s) 445, 649, 664
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 2 cut(s) 249, 676
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 318, 503
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 2 cut(s) 29, 361
Cfr13I GGNCC 2 cut(s) 44, 675
CseI GACGC 2 cut(s) 274, 283
Csp6I GTAC 2 cut(s) 85, 99
CviAII CATG 3 cut(s) 547, 634, 666
CviQI GTAC 2 cut(s) 85, 99
DdeI CTNAG 3 cut(s) 291, 498, 569
DinI GGCGCC 1 cut(s) 360
DpnI GATC 3 cut(s) 198, 227, 469
DpnII GATC 3 cut(s) 196, 225, 467
DriI GACNNNNNGTC 1 cut(s) 42
Eam1105I GACNNNNNGTC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 675
EcoRII CCWGG 1 cut(s) 395
EgeI GGCGCC 1 cut(s) 360
EheI GGCGCC 1 cut(s) 360
FaeI CATG 3 cut(s) 550, 637, 669
FaqI GGGAC 1 cut(s) 330
FatI CATG 3 cut(s) 546, 633, 665
Fnu4HI GCNGC 3 cut(s) 459, 653, 663
Fsp4HI GCNGC 3 cut(s) 459, 653, 663
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 28, 360
GluI GCNGC 3 cut(s) 459, 653, 663
GsaI CCCAGC 1 cut(s) 534
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 2 cut(s) 249, 676
HapII CCGG 1 cut(s) 596
HgaI GACGC 2 cut(s) 274, 283
HhaI GCGC 2 cut(s) 29, 361
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 3 cut(s) 550, 637, 669
Hin6I GCGC 2 cut(s) 27, 359
HinP1I GCGC 2 cut(s) 27, 359
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HindIII AAGCTT 2 cut(s) 146, 190
HinfI GANTC 4 cut(s) 295, 318, 338, 508
HpaII CCGG 1 cut(s) 596
Hpy166II GTNNAC 4 cut(s) 58, 273, 578, 621
Hpy188I TCNGA 6 cut(s) 36, 82, 131, 181, 294, 672
Hpy188III TCNNGA 3 cut(s) 206, 419, 596
Hpy8I GTNNAC 4 cut(s) 58, 273, 578, 621
HpyCH4III ACNGT 2 cut(s) 7, 618
HpyCH4V TGCA 4 cut(s) 412, 431, 461, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 3 cut(s) 291, 498, 569
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 3 cut(s) 550, 637, 669
HspAI GCGC 2 cut(s) 27, 359
KasI GGCGCC 1 cut(s) 358
Kpn2I TCCGGA 1 cut(s) 595
KpnI GGTACC 1 cut(s) 102
Kzo9I GATC 3 cut(s) 196, 225, 467
LmnI GCTCC 1 cut(s) 486
Lsp1109I GCAGC 3 cut(s) 445, 649, 664
MaeI CTAG 1 cut(s) 386
MalI GATC 3 cut(s) 198, 227, 469
MboI GATC 3 cut(s) 196, 225, 467
MboII GAAGA 1 cut(s) 10
MflI RGATCY 1 cut(s) 467
MluCI AATT 3 cut(s) 209, 302, 389
Mly113I GGCGCC 1 cut(s) 359
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 8 cut(s) 57, 112, 372, 374, 415, 592, 634, 666
MroI TCCGGA 1 cut(s) 595
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 1 cut(s) 397
Mva1269I GAATGC 1 cut(s) 638
MvaI CCWGG 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 274
NarI GGCGCC 1 cut(s) 359
NdeII GATC 3 cut(s) 196, 225, 467
NlaIII CATG 3 cut(s) 550, 637, 669
NlaIV GGNNCC 4 cut(s) 100, 360, 376, 482
NspI RCATGY 1 cut(s) 669
PctI GAATGC 1 cut(s) 638
PfeI GAWTC 3 cut(s) 295, 338, 508
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 3 cut(s) 460, 654, 664
PleI GAGTC 1 cut(s) 312
PluTI GGCGCC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 4 cut(s) 100, 360, 376, 482
PspPI GGNCC 2 cut(s) 44, 675
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 2 cut(s) 86, 100
RsaNI GTAC 2 cut(s) 85, 99
SatI GCNGC 3 cut(s) 459, 653, 663
Sau3AI GATC 3 cut(s) 196, 225, 467
Sau96I GGNCC 2 cut(s) 44, 675
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 1 cut(s) 397
SfoI GGCGCC 1 cut(s) 360
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 3 cut(s) 143, 170, 419
SmoI CTYRAG 3 cut(s) 143, 170, 419
Sse9I AATT 3 cut(s) 209, 302, 389
SsiI CCGC 2 cut(s) 66, 484
SspDI GGCGCC 1 cut(s) 358
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 7, 618
TaqI TCGA 1 cut(s) 195
TasI AATT 3 cut(s) 209, 302, 389
TfiI GAWTC 3 cut(s) 295, 338, 508
TscAI CASTG 2 cut(s) 318, 510
TseI GCWGC 3 cut(s) 458, 652, 662
TspDTI ATGAA 3 cut(s) 201, 223, 631
TspRI CASTG 2 cut(s) 318, 510
Van91I CCANNNNNTGG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 302, 389
XceI RCATGY 1 cut(s) 669
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.