RLG00000011370

Transmembrane protein 147-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016163
Physical Location & Seq
Forward (+)
8952995 .. 8955510
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011370

Sequence Viewer

Length: 972 bp
ATGACGGTGTTTCACTTCTTCAACTGTGCGATTCTGACGTTTGGTCCTCACGCCGTCTACTACTCCGCCACTCCGCTATCGGAGTATGACACACTCGGCACCTCCATTAAAGCAGCTGTGGTTTATCTCGGAACAGCTCTAGTCAAGCTGGTTTGTTTGGCTACTTTTCTCAAGGTATCTGATAATGAAAGCTTCGATCCATATCAGGAATTGTTGAAAGCTTTGATCGGTTTCATAGATGTTGCTGGCCTTTACTTTGCTTTGACCCAGTTGACCCATAGGAACATCTCCCAAAATCATAAATTTCAAGCAGTGGGACTCGGGTGGGCTTTTGCTGATTCGGTTCTCCATAGATTGGCACCTCTGTGGGTGGGTGCCAGAGGACTAGAATTTACCTGGGATTACATTCTGCAAGGCCTTGAGGCAAATGCAAATCTGGTTTTGAGCATATCCCTTGCTGCATTGGGATCTTTGATGTGGCTTCGCAAAAACAAGCCTAAGACTCTGATTCCTATAATATACATCTGTGCTGGGATTGTGGCAACCATGCCATCTATCACAAGCTATCTAAGGCGTGGCCTGGGGTGGCACTTCCCAGAGGTGGTAGGATTTCAACTCTTTACCTCTCTGATCATGGCATTCATCAGCTGGCAGCTCTTTGCTGCATCGGATGCTTGGGAACTGAAGAGTAATATTGCAACTGTTGTATCAGTTTTGACTGTAAAGTTTCCACAAGAAGAGCTGATGGTGGTCGGAATGTTGGCGATTCAGCCATTTTTAGGCGGAGAAGAGCGGACGGAATTGAAGATGAGACTGAAGAGTCTGCCGCTAGTGAACACGGAGCGGCGGATGGGCTGGTTGCGGAAGGCGTTTGCCGGAGGGGTCGGATTGGGACCATCCGACGATTGTGTAGTTTGGGAATTGGAGCCGTTGCAAGATTGGCAGAATAGGTACCAGGAGAGACAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2053

Protein Analysis

324

Amino Acids

36.12

Weight (kDa)

7.01

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2053 PF09767 2 - 161 3.3e-59 Predicted membrane protein (DUF2053)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47640
fragaria_vesca FvH4_2g40630
malus_domestica MD08G1039400.v1.1 MD15G1034100.v1.1
prunus_persica Prupe.1G387900_v2.0.a1
pyrus_communis pycom08g03150 pycom15g03140
rosa_chinensis RchiOBHm_Chr6g0300041
rosa_laevigata RLG00000011370
rosa_multiflora Rmu_sc0010665.1_g000003
rosa_roxburghii Rroxscaffold_7G00168170
rosa_rugosa Rorug06G0293800
rosa_samantha Rh6BG413700 Rh6DG406400
rosa_wichuraiana Rw6G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 819
Acc65I GGTACC 1 cut(s) 951
AccB1I GGYRCC 4 cut(s) 98, 358, 374, 951
AccB7I CCANNNNNTGG 1 cut(s) 355
AccBSI CCGCTC 2 cut(s) 793, 844
AccI GTMKAC 1 cut(s) 57
AciI CCGC 8 cut(s) 66, 74, 783, 793, 827, 844, 847, 862
AclWI GGATC 2 cut(s) 191, 475
AcsI RAATTY 2 cut(s) 302, 389
AcuI CTGAAG 2 cut(s) 704, 836
AfaI GTAC 1 cut(s) 953
AfiI CCNNNNNNNGG 3 cut(s) 355, 601, 779
AgsI TTSAA 5 cut(s) 22, 217, 308, 614, 805
AhdI GACNNNNNGTC 1 cut(s) 42
AjnI CCWGG 3 cut(s) 395, 579, 954
AleI CACNNNNGTG 1 cut(s) 364
Alw26I GTCTC 2 cut(s) 805, 955
AlwI GGATC 2 cut(s) 191, 475
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 3 cut(s) 247, 415, 577
ApeKI GCWGC 4 cut(s) 113, 458, 652, 662
ApoI RAATTY 2 cut(s) 302, 389
Asp718I GGTACC 1 cut(s) 951
AspS9I GGNCC 2 cut(s) 44, 893
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 44, 893
BaeI ACNNNNGTAYC 2 cut(s) 690, 723
BanI GGYRCC 4 cut(s) 98, 358, 374, 951
BbvI GCAGC 4 cut(s) 125, 445, 649, 664
BccI CCATC 4 cut(s) 559, 739, 844, 904
BceAI ACGGC 2 cut(s) 38, 913
BciT130I CCWGG 3 cut(s) 397, 581, 956
BclI TGATCA 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 805, 955
BfaI CTAG 3 cut(s) 140, 386, 830
BisI GCNGC 6 cut(s) 114, 459, 653, 663, 827, 845
BlsI GCNGC 6 cut(s) 115, 460, 654, 664, 828, 846
Bme1390I CCNGG 3 cut(s) 397, 581, 956
Bme18I GGWCC 2 cut(s) 44, 893
BmeRI GACNNNNNGTC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 44, 893
BmiI GGNNCC 6 cut(s) 100, 360, 376, 894, 927, 953
BmrFI CCNGG 3 cut(s) 397, 581, 956
BmrI ACTGGG 1 cut(s) 262
BmsI GCATC 2 cut(s) 661, 674
BmuI ACTGGG 1 cut(s) 262
BpuEI CTTGAG 2 cut(s) 155, 440
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 396, 580
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 601, 779
Bse1I ACTGG 1 cut(s) 268
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 3 cut(s) 397, 581, 956
BseDI CCNNGG 2 cut(s) 396, 580
BseGI GGATG 3 cut(s) 676, 855, 896
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 355, 601, 779
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 4 cut(s) 125, 445, 649, 664
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 3 cut(s) 249, 417, 579
BshNI GGYRCC 4 cut(s) 98, 358, 374, 951
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 876
BslFI GGGAC 2 cut(s) 330, 906
BslI CCNNNNNNNGG 3 cut(s) 355, 601, 779
BsmAI GTCTC 2 cut(s) 805, 955
BsmFI GGGAC 2 cut(s) 330, 906
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 3 cut(s) 249, 417, 579
BsoBI CYCGRG 1 cut(s) 320
Bsp143I GATC 4 cut(s) 196, 225, 467, 630
BspACI CCGC 8 cut(s) 66, 74, 783, 793, 827, 844, 847, 862
BspANI GGCC 3 cut(s) 249, 417, 579
BspLI GGNNCC 6 cut(s) 100, 360, 376, 894, 927, 953
BspPI GGATC 2 cut(s) 191, 475
BspQI GCTCTTC 2 cut(s) 732, 783
BspT107I GGYRCC 4 cut(s) 98, 358, 374, 951
BsrBI CCGCTC 2 cut(s) 793, 844
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 396, 580
BssMI GATC 4 cut(s) 196, 225, 467, 630
Bst2UI CCWGG 3 cut(s) 397, 581, 956
Bst4CI ACNGT 4 cut(s) 7, 26, 703, 721
Bst6I CTCTTC 4 cut(s) 680, 732, 783, 812
BstAPI GCANNNNNTGC 1 cut(s) 671
BstC8I GCNNGC 2 cut(s) 247, 650
BstDEI CTNAG 2 cut(s) 498, 569
BstF5I GGATG 3 cut(s) 676, 855, 896
BstKTI GATC 4 cut(s) 199, 228, 470, 633
BstMAI GTCTC 2 cut(s) 805, 955
BstMBI GATC 4 cut(s) 196, 225, 467, 630
BstMWI GCNNNNNNNGC 2 cut(s) 671, 940
BstNI CCWGG 3 cut(s) 397, 581, 956
BstSCI CCNGG 3 cut(s) 395, 579, 954
BstV1I GCAGC 4 cut(s) 125, 445, 649, 664
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 3 cut(s) 249, 417, 579
BtsCI GGATG 3 cut(s) 676, 855, 896
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 247, 650
Cfr13I GGNCC 2 cut(s) 44, 893
Csp6I GTAC 1 cut(s) 952
CviAII CATG 2 cut(s) 547, 634
CviQI GTAC 1 cut(s) 952
DdeI CTNAG 2 cut(s) 498, 569
DpnI GATC 4 cut(s) 198, 227, 469, 632
DpnII GATC 4 cut(s) 196, 225, 467, 630
DrdI GACNNNNNNGTC 1 cut(s) 819
DriI GACNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 819
Eam1104I CTCTTC 4 cut(s) 680, 732, 783, 812
Eam1105I GACNNNNNGTC 1 cut(s) 42
EarI CTCTTC 4 cut(s) 680, 732, 783, 812
EciI GGCGGA 3 cut(s) 55, 798, 862
Eco147I AGGCCT 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 44, 893
Eco57I CTGAAG 2 cut(s) 704, 836
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 3 cut(s) 395, 579, 954
FaeI CATG 2 cut(s) 550, 637
FaqI GGGAC 2 cut(s) 330, 906
FatI CATG 2 cut(s) 546, 633
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 6 cut(s) 114, 459, 653, 663, 827, 845
FokI GGATG 3 cut(s) 683, 862, 883
Fsp4HI GCNGC 6 cut(s) 114, 459, 653, 663, 827, 845
FspBI CTAG 3 cut(s) 140, 386, 830
GluI GCNGC 6 cut(s) 114, 459, 653, 663, 827, 845
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 3 cut(s) 249, 417, 579
HapII CCGG 1 cut(s) 876
Hin1II CATG 2 cut(s) 550, 637
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HindIII AAGCTT 2 cut(s) 190, 219
HinfI GANTC 7 cut(s) 31, 318, 338, 502, 508, 766, 820
HpaII CCGG 1 cut(s) 876
Hpy166II GTNNAC 3 cut(s) 58, 273, 835
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 3 cut(s) 58, 273, 835
Hpy99I CGWCG 1 cut(s) 905
HpyAV CCTTC 1 cut(s) 859
HpyCH4III ACNGT 4 cut(s) 7, 26, 703, 721
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 6 cut(s) 412, 431, 461, 665, 698, 934
HpyF10VI GCNNNNNNNGC 2 cut(s) 671, 940
HpyF3I CTNAG 2 cut(s) 498, 569
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 2 cut(s) 550, 637
KpnI GGTACC 1 cut(s) 955
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 4 cut(s) 196, 225, 467, 630
LguI GCTCTTC 2 cut(s) 732, 783
LmnI GCTCC 2 cut(s) 841, 925
Lsp1109I GCAGC 4 cut(s) 125, 445, 649, 664
LweI GCATC 2 cut(s) 661, 674
MaeI CTAG 3 cut(s) 140, 386, 830
MaeII ACGT 1 cut(s) 38
MalI GATC 4 cut(s) 198, 227, 469, 632
MbiI CCGCTC 2 cut(s) 793, 844
MboI GATC 4 cut(s) 196, 225, 467, 630
MboII GAAGA 6 cut(s) 10, 697, 749, 800, 817, 829
MflI RGATCY 1 cut(s) 467
MluCI AATT 5 cut(s) 209, 302, 389, 800, 920
MlyI GAGTC 3 cut(s) 312, 496, 829
MmeI TCCRAC 3 cut(s) 733, 865, 924
MnlI CCTC 8 cut(s) 57, 112, 372, 374, 415, 592, 634, 872
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 364
MspA1I CMGCKG 2 cut(s) 116, 648
MspI CCGG 1 cut(s) 876
MspR9I CCNGG 3 cut(s) 397, 581, 956
Mva1269I GAATGC 1 cut(s) 638
MvaI CCWGG 3 cut(s) 397, 581, 956
MwoI GCNNNNNNNGC 2 cut(s) 671, 940
NdeII GATC 4 cut(s) 196, 225, 467, 630
NlaIII CATG 2 cut(s) 550, 637
NlaIV GGNNCC 6 cut(s) 100, 360, 376, 894, 927, 953
NmeAIII GCCGAG 1 cut(s) 75
OliI CACNNNNGTG 1 cut(s) 364
PceI AGGCCT 1 cut(s) 417
PciSI GCTCTTC 2 cut(s) 732, 783
PctI GAATGC 1 cut(s) 638
PfeI GAWTC 4 cut(s) 31, 338, 508, 766
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 6 cut(s) 115, 460, 654, 664, 828, 846
PleI GAGTC 3 cut(s) 312, 496, 828
PpsI GAGTC 3 cut(s) 312, 496, 828
Psp6I CCWGG 3 cut(s) 395, 579, 954
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 3 cut(s) 395, 579, 954
PspN4I GGNNCC 6 cut(s) 100, 360, 376, 894, 927, 953
PspPI GGNCC 2 cut(s) 44, 893
PsuI RGATCY 1 cut(s) 467
PvuII CAGCTG 2 cut(s) 116, 648
RsaI GTAC 1 cut(s) 953
RsaNI GTAC 1 cut(s) 952
RseI CAYNNNNRTG 1 cut(s) 364
SapI GCTCTTC 2 cut(s) 732, 783
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 6 cut(s) 114, 459, 653, 663, 827, 845
Sau3AI GATC 4 cut(s) 196, 225, 467, 630
Sau96I GGNCC 2 cut(s) 44, 893
SchI GAGTC 3 cut(s) 312, 496, 829
ScrFI CCNGG 3 cut(s) 397, 581, 956
SfaNI GCATC 2 cut(s) 661, 674
SinI GGWCC 2 cut(s) 44, 893
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 170, 419
SmoI CTYRAG 2 cut(s) 170, 419
Sse9I AATT 5 cut(s) 209, 302, 389, 800, 920
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 8 cut(s) 66, 74, 783, 793, 827, 844, 847, 862
SspI AATATT 1 cut(s) 694
SspMI CTAG 3 cut(s) 140, 386, 830
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 395, 579, 954
TaaI ACNGT 4 cut(s) 7, 26, 703, 721
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 195
TasI AATT 5 cut(s) 209, 302, 389, 800, 920
TauI GCSGC 2 cut(s) 829, 847
TfiI GAWTC 4 cut(s) 31, 338, 508, 766
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 318
TseI GCWGC 4 cut(s) 113, 458, 652, 662
TspDTI ATGAA 3 cut(s) 201, 223, 631
TspGWI ACGGA 2 cut(s) 812, 854
TspRI CASTG 1 cut(s) 318
Van91I CCANNNNNTGG 1 cut(s) 355
VpaK11BI GGWCC 2 cut(s) 44, 893
XapI RAATTY 2 cut(s) 302, 389
XmiI GTMKAC 1 cut(s) 57
XspI CTAG 3 cut(s) 140, 386, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.