Rw6G035480

Transmembrane protein 147-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016163
Physical Location & Seq
Reverse (-)
60018633 .. 60020975
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035480.1

Sequence Viewer

Length: 687 bp
ATGACGGTGTTTCACTTCTTCAACTGTGCGATTCTGACGTTTGGTCCTCACGCCGTCTACTACTCTGCCACTCCTCTATCGGAGTATGACACACTCGGCACCTCCATTAAAGCAGCAGTGGTTTATCTCGGAACAGCTCTAGTCAAGCTTGTTTGTTTGGCTACTTTTCTCAAGGTATCTGATAATGAAAGCTTCGATCCATATCAGGAATTGTTGAAAGCTTTGATCGGCTTCATAGATGTTGCTGGCCTTTACTTTGCTTTGACCCAGTTGACCCATAGGAACATCTCTCAAAATCATAAATTTCAAGCAGTGGGACTTGGGTGGGCTTTTGCTGATTCGGTTCTCCATAGATTGGCACCTCTGTGGGTGGGTGCCAGAGGACTAGAATTTACCTGGGATTACATTCTGCAAGGCCTTGAGGCAAATGCAAATCTGGTTTTGAGCATATCCCTTGCTGCATTGGGATCTTTGATGTGGCTTCGCAAAAACAAGCCTAAGACGCTGATTCCTATAATATACATCTGTGCTGGGATTGTGGCAACCATGCCATCTATCACAAGCTATCTAAGGCGTGCCCTGGGGTGGCACTTCCCGGAGGTGGTAGGATTTCAACTCTTTACCTCTCTGATCATGGCATTCATCAGCTGGCAGCTCTTTGCTGCATGTCAGAGGCCCTCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2053

Protein Analysis

228

Amino Acids

25.29

Weight (kDa)

8.67

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2053 PF09767 2 - 161 1.2e-59 Predicted membrane protein (DUF2053)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47640
fragaria_vesca FvH4_2g40630
malus_domestica MD08G1039400.v1.1 MD15G1034100.v1.1
prunus_persica Prupe.1G387900_v2.0.a1
pyrus_communis pycom08g03150 pycom15g03140
rosa_chinensis RchiOBHm_Chr6g0300041
rosa_laevigata RLG00000011370
rosa_multiflora Rmu_sc0010665.1_g000003
rosa_roxburghii Rroxscaffold_7G00168170
rosa_rugosa Rorug06G0293800
rosa_samantha Rh6BG413700 Rh6DG406400
rosa_wichuraiana Rw6G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 98, 358, 374
AccB7I CCANNNNNTGG 1 cut(s) 355
AccI GTMKAC 1 cut(s) 57
AclWI GGATC 2 cut(s) 191, 475
AcsI RAATTY 2 cut(s) 302, 389
AfiI CCNNNNNNNGG 3 cut(s) 355, 585, 601
AgsI TTSAA 4 cut(s) 22, 217, 308, 614
AhdI GACNNNNNGTC 1 cut(s) 42
AjnI CCWGG 2 cut(s) 395, 579
AleI CACNNNNGTG 1 cut(s) 364
AluBI AGCT 7 cut(s) 137, 148, 192, 221, 564, 648, 655
AluI AGCT 7 cut(s) 137, 148, 192, 221, 564, 648, 655
AlwI GGATC 2 cut(s) 191, 475
AoxI GGCC 3 cut(s) 247, 415, 674
ApeKI GCWGC 4 cut(s) 113, 458, 652, 662
ApoI RAATTY 2 cut(s) 302, 389
AspS9I GGNCC 2 cut(s) 44, 675
AsuC2I CCSGG 1 cut(s) 596
AvaII GGWCC 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 580
BanI GGYRCC 3 cut(s) 98, 358, 374
BbvI GCAGC 4 cut(s) 125, 445, 649, 664
BccI CCATC 1 cut(s) 559
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 397, 581
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 1 cut(s) 596
BfaI CTAG 2 cut(s) 140, 386
BisI GCNGC 4 cut(s) 114, 459, 653, 663
BlsI GCNGC 4 cut(s) 115, 460, 654, 664
Bme1390I CCNGG 3 cut(s) 397, 581, 596
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 44, 675
BmiI GGNNCC 3 cut(s) 100, 360, 376
BmrFI CCNGG 3 cut(s) 397, 581, 596
BmrI ACTGGG 1 cut(s) 262
BmuI ACTGGG 1 cut(s) 262
BpuEI CTTGAG 2 cut(s) 155, 440
BpuMI CCSGG 1 cut(s) 596
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 396, 579, 580
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 585, 601
Bse1I ACTGG 1 cut(s) 268
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 2 cut(s) 397, 581
BseDI CCNNGG 3 cut(s) 396, 579, 580
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 355, 585, 601
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 63
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 4 cut(s) 125, 445, 649, 664
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 3 cut(s) 249, 417, 676
BshNI GGYRCC 3 cut(s) 98, 358, 374
BsiSI CCGG 1 cut(s) 596
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 3 cut(s) 355, 585, 601
BsmFI GGGAC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 3 cut(s) 249, 417, 676
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 4 cut(s) 196, 225, 467, 630
BspANI GGCC 3 cut(s) 249, 417, 676
BspLI GGNNCC 3 cut(s) 100, 360, 376
BspPI GGATC 2 cut(s) 191, 475
BspT107I GGYRCC 3 cut(s) 98, 358, 374
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 3 cut(s) 396, 579, 580
BssMI GATC 4 cut(s) 196, 225, 467, 630
Bst2UI CCWGG 2 cut(s) 397, 581
Bst4CI ACNGT 2 cut(s) 7, 26
BstC8I GCNNGC 3 cut(s) 247, 576, 650
BstDEI CTNAG 2 cut(s) 498, 569
BstKTI GATC 4 cut(s) 199, 228, 470, 633
BstMBI GATC 4 cut(s) 196, 225, 467, 630
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstNI CCWGG 2 cut(s) 397, 581
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 3 cut(s) 395, 579, 594
BstSLI GKGCMC 1 cut(s) 580
BstV1I GCAGC 4 cut(s) 125, 445, 649, 664
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 3 cut(s) 249, 417, 676
BtsI GCAGTG 2 cut(s) 123, 318
BtsIMutI CAGTG 2 cut(s) 123, 318
Cac8I GCNNGC 3 cut(s) 247, 576, 650
Cfr13I GGNCC 2 cut(s) 44, 675
CseI GACGC 1 cut(s) 511
CviAII CATG 3 cut(s) 547, 634, 666
DdeI CTNAG 2 cut(s) 498, 569
DpnI GATC 4 cut(s) 198, 227, 469, 632
DpnII GATC 4 cut(s) 196, 225, 467, 630
DriI GACNNNNNGTC 1 cut(s) 42
Eam1105I GACNNNNNGTC 1 cut(s) 42
Eco147I AGGCCT 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 675
EcoRII CCWGG 2 cut(s) 395, 579
FaeI CATG 3 cut(s) 550, 637, 669
FaqI GGGAC 1 cut(s) 330
FatI CATG 3 cut(s) 546, 633, 665
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 4 cut(s) 114, 459, 653, 663
Fsp4HI GCNGC 4 cut(s) 114, 459, 653, 663
FspBI CTAG 2 cut(s) 140, 386
GluI GCNGC 4 cut(s) 114, 459, 653, 663
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 3 cut(s) 249, 417, 676
HapII CCGG 1 cut(s) 596
HgaI GACGC 1 cut(s) 511
Hin1II CATG 3 cut(s) 550, 637, 669
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HindIII AAGCTT 3 cut(s) 146, 190, 219
HinfI GANTC 3 cut(s) 31, 338, 508
HpaII CCGG 1 cut(s) 596
Hpy166II GTNNAC 2 cut(s) 58, 273
Hpy188I TCNGA 6 cut(s) 36, 82, 131, 181, 630, 672
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 2 cut(s) 58, 273
HpyCH4III ACNGT 2 cut(s) 7, 26
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 4 cut(s) 412, 431, 461, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 2 cut(s) 498, 569
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 3 cut(s) 550, 637, 669
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 4 cut(s) 196, 225, 467, 630
Lsp1109I GCAGC 4 cut(s) 125, 445, 649, 664
MaeI CTAG 2 cut(s) 140, 386
MaeII ACGT 1 cut(s) 38
MalI GATC 4 cut(s) 198, 227, 469, 632
MboI GATC 4 cut(s) 196, 225, 467, 630
MboII GAAGA 1 cut(s) 10
MflI RGATCY 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 3 cut(s) 209, 302, 389
MnlI CCTC 9 cut(s) 57, 84, 112, 372, 374, 415, 592, 634, 666
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 364
MspA1I CMGCKG 1 cut(s) 648
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 3 cut(s) 397, 581, 596
Mva1269I GAATGC 1 cut(s) 638
MvaI CCWGG 2 cut(s) 397, 581
MwoI GCNNNNNNNGC 1 cut(s) 502
NciI CCSGG 1 cut(s) 596
NdeII GATC 4 cut(s) 196, 225, 467, 630
NlaIII CATG 3 cut(s) 550, 637, 669
NlaIV GGNNCC 3 cut(s) 100, 360, 376
NmeAIII GCCGAG 1 cut(s) 75
NspI RCATGY 1 cut(s) 669
OliI CACNNNNGTG 1 cut(s) 364
PasI CCCWGGG 1 cut(s) 580
PceI AGGCCT 1 cut(s) 417
PctI GAATGC 1 cut(s) 638
PfeI GAWTC 3 cut(s) 31, 338, 508
PflMI CCANNNNNTGG 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 594
PkrI GCNGC 4 cut(s) 115, 460, 654, 664
Psp6I CCWGG 2 cut(s) 395, 579
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 2 cut(s) 395, 579
PspN4I GGNNCC 3 cut(s) 100, 360, 376
PspPI GGNCC 2 cut(s) 44, 675
PsuI RGATCY 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 648
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 4 cut(s) 114, 459, 653, 663
Sau3AI GATC 4 cut(s) 196, 225, 467, 630
Sau96I GGNCC 2 cut(s) 44, 675
ScrFI CCNGG 3 cut(s) 397, 581, 596
SduI GDGCHC 1 cut(s) 580
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 170, 419
SmoI CTYRAG 2 cut(s) 170, 419
Sse9I AATT 3 cut(s) 209, 302, 389
SseBI AGGCCT 1 cut(s) 417
SspMI CTAG 2 cut(s) 140, 386
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 395, 579, 594
TaaI ACNGT 2 cut(s) 7, 26
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 195
TasI AATT 3 cut(s) 209, 302, 389
TfiI GAWTC 3 cut(s) 31, 338, 508
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 123, 318
TseI GCWGC 4 cut(s) 113, 458, 652, 662
TspDTI ATGAA 3 cut(s) 201, 223, 631
TspRI CASTG 2 cut(s) 123, 318
Van91I CCANNNNNTGG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 302, 389
XceI RCATGY 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 57
XspI CTAG 2 cut(s) 140, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.