AT1G47920

positive regulation of bicellular tight junction assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005679
Physical Location & Seq
Forward (+)
17661095 .. 17662455
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47920.1

Sequence Viewer

Length: 1140 bp
ATGGAACGTGGATTGTTGGAACTACACTTGCACGCCGAATCATTTTTATTTGTAGAGAGAGAGTTGTTCACGAGCAAGACACTGGTTAAGCTCACACTATCCGCTGGATATGATTTCGAAGCTGAGCGTGTGTTTCTCCCTGCGCTCAAATCACTTTATCTCTTAACTGATTCCGGGATTGATTATGACAACCATTGTCGGCTCCTTGATGGCTGCCCTGCTTTGGAAGAGTTATTCATACGTGATGCTGATCATGATTGTCCGCCATGTTGCGGTTCAGTCGTGAAAAGTGCATCCATCAAGCGACTTGTGGTTTTGGTTAATCTTCCAAACAAGAGAGACAGTCACGATTATGCTTATTTTGAAGCACCAAGTCTTGTGTACCTTGACTATTCTAGTTATGTCTACGAGACTTATCAGATTGTTGGTTTGGATTCGCTTGTCGAAGCCAGGCTGAGTCTCAAGATATGGGATTATTATGATTACAATTATGATTACGAGTATGATGACGAAAGTGGTGATTATTATTCTGATGATGATGAGGGTCGTTCTTACTGTTATTCTTATGTTGATGATGAACGAAAGGAGCCTATTTTTGGTGATGTTACAAATCTACTTGCGGGTGTAACCAACATTACAACCCTTCACTTGTCTCCCGATTCCCTTGAGGCATTTTATTTCTGCTGTAAATCCATGCCGGTTTTCAACAAACTCCTTAATTTATTTATTGAGAGTAACAAGGATAAAGGTTGGCAAGGAATGCCTCTTCTCCTGAAGAGTTGCCCAATTCTACACACTTTAGTCTTCAAGGGTCTTGTACATAGAGTAACAAACAAATGTGGAGATGCATGTGCTTGCATCCCTAAGAAGGAAAAGAGGGAGAATGAGAAAAAGAATAGGAAGATTGTGGAGAAGAAATTGTCTTGTTTATGGACTTGTCAAGTGAAGGTGCTGGAGATTTCAAAGTACGATGGTTCTTTTCAAGAGCTGAAACAGATGGGACATTTATTGGGCAAATTGGGATGTCTTGAATCTGTGAAAGTTGGTGTTCACGCGGACAACAACACTGAGTTCTTGCAAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCAAAGTGCAACAATATCCAGTTCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001654 GO:0003006 GO:0003008 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0005911 GO:0005923 GO:0005929 GO:0006996 GO:0007010 GO:0007154 GO:0007155 GO:0007165 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007423 GO:0007568 GO:0007588 GO:0007610 GO:0007617 GO:0007618 GO:0007626 GO:0007632 GO:0008104 GO:0008150 GO:0008340 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0010259 GO:0015630 GO:0016020 GO:0016043 GO:0019098 GO:0019953 GO:0022008 GO:0022406 GO:0022412 GO:0022414 GO:0022607 GO:0022610 GO:0023041 GO:0023052 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030054 GO:0030154 GO:0030182 GO:0031514 GO:0032391 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034606 GO:0034607 GO:0034613 GO:0035178 GO:0035845 GO:0035869 GO:0036064 GO:0042461 GO:0042995 GO:0043005 GO:0043010 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043296 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044782 GO:0046530 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048522 GO:0048609 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051640 GO:0051641 GO:0051704 GO:0051716 GO:0060041 GO:0060179 GO:0060271 GO:0065007 GO:0070160 GO:0070727 GO:0070925 GO:0071840 GO:0097458 GO:0097546 GO:0097711 GO:0097730 GO:0097731 GO:0097733 GO:0098609 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:0140056 GO:1901888 GO:1901890 GO:1903348 GO:1905515 GO:2000810
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SH3_1

Protein Analysis

379

Amino Acids

43.34

Weight (kDa)

5.31

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 1055
AciI CCGC 5 cut(s) 102, 263, 273, 620, 1055
AcuI CTGAAG 1 cut(s) 794
AfaI GTAC 3 cut(s) 383, 819, 968
AfiI CCNNNNNNNGG 4 cut(s) 223, 272, 596, 868
AgsI TTSAA 6 cut(s) 365, 706, 808, 963, 983, 1031
AjnI CCWGG 1 cut(s) 449
AluBI AGCT 5 cut(s) 91, 122, 988, 1082, 1137
AluI AGCT 5 cut(s) 91, 122, 988, 1082, 1137
Alw26I GTCTC 4 cut(s) 333, 404, 464, 657
ApeKI GCWGC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 530, 611
AsuII TTCGAA 1 cut(s) 117
BauI CACGAG 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 796
BbvI GCAGC 1 cut(s) 200
BccI CCATC 4 cut(s) 203, 305, 965, 991
BciT130I CCWGG 1 cut(s) 451
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 4 cut(s) 333, 404, 464, 657
BfaI CTAG 1 cut(s) 396
BisI GCNGC 1 cut(s) 214
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 215
Bme1390I CCNGG 2 cut(s) 175, 451
BmiI GGNNCC 2 cut(s) 203, 588
BmrFI CCNGG 2 cut(s) 175, 451
BmsI GCATC 4 cut(s) 235, 302, 835, 867
BpiI GAAGAC 1 cut(s) 796
BpmI CTGGAG 1 cut(s) 974
Bpu1102I GCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 446, 686
BpuMI CCSGG 1 cut(s) 175
BsaAI YACGTR 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 249
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 272, 596, 868
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 2 cut(s) 87, 1129
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 1 cut(s) 451
BseGI GGATG 3 cut(s) 293, 858, 1028
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 4 cut(s) 223, 272, 596, 868
BseMII CTCAG 3 cut(s) 114, 446, 1059
BseNI ACTGG 2 cut(s) 87, 1129
BseXI GCAGC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 1055
BsiSI CCGG 2 cut(s) 174, 698
BslFI GGGAC 1 cut(s) 1014
BslI CCNNNNNNNGG 4 cut(s) 223, 272, 596, 868
BsmAI GTCTC 4 cut(s) 333, 404, 464, 657
BsmFI GGGAC 1 cut(s) 1014
BsmI GAATGC 1 cut(s) 765
Bsp119I TTCGAA 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 817
Bsp143I GATC 1 cut(s) 250
Bsp1720I GCTNAGC 1 cut(s) 123
BspACI CCGC 5 cut(s) 102, 263, 273, 620, 1055
BspCNI CTCAG 3 cut(s) 115, 447, 1060
BspFNI CGCG 1 cut(s) 1055
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 203, 588
BspT104I TTCGAA 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 697
BsrGI TGTACA 1 cut(s) 817
BsrI ACTGG 2 cut(s) 87, 1129
BssAI RCCGGY 1 cut(s) 697
BssMI GATC 1 cut(s) 250
BssSI CACGAG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 2 cut(s) 344, 557
Bst6I CTCTTC 3 cut(s) 222, 770, 771
BstAPI GCANNNNNTGC 1 cut(s) 760
BstAUI TGTACA 1 cut(s) 817
BstBAI YACGTR 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 4 cut(s) 33, 856, 1080, 1092
BstDEI CTNAG 4 cut(s) 123, 455, 864, 1068
BstF5I GGATG 3 cut(s) 293, 858, 1028
BstFNI CGCG 1 cut(s) 1055
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 4 cut(s) 333, 404, 464, 657
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 760
BstNI CCWGG 1 cut(s) 451
BstNSI RCATGY 1 cut(s) 852
BstSCI CCNGG 2 cut(s) 173, 449
BstUI CGCG 1 cut(s) 1055
BstV1I GCAGC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 796
BtsCI GGATG 3 cut(s) 293, 858, 1028
BtsIMutI CAGTG 2 cut(s) 80, 1065
Cac8I GCNNGC 4 cut(s) 33, 856, 1080, 1092
CciI TCATGA 1 cut(s) 253
CfoI GCGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 697
Csp6I GTAC 3 cut(s) 382, 818, 967
CviAII CATG 4 cut(s) 254, 267, 694, 849
CviQI GTAC 3 cut(s) 382, 818, 967
DdeI CTNAG 4 cut(s) 123, 455, 864, 1068
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 3 cut(s) 222, 770, 771
EarI CTCTTC 3 cut(s) 222, 770, 771
EciI GGCGGA 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 794
EcoRII CCWGG 1 cut(s) 449
EcoT22I ATGCAT 1 cut(s) 850
FaeI CATG 4 cut(s) 257, 270, 697, 852
FaqI GGGAC 1 cut(s) 1014
FatI CATG 4 cut(s) 253, 266, 693, 848
FauI CCCGC 1 cut(s) 613
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 1 cut(s) 214
FokI GGATG 3 cut(s) 280, 845, 1035
Fsp4HI GCNGC 1 cut(s) 214
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 974
HapII CCGG 2 cut(s) 174, 698
HhaI GCGC 1 cut(s) 145
Hin1II CATG 4 cut(s) 257, 270, 697, 852
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 6 cut(s) 38, 170, 434, 457, 659, 1031
HpaII CCGG 2 cut(s) 174, 698
HphI GGTGA 2 cut(s) 530, 611
Hpy166II GTNNAC 4 cut(s) 69, 382, 406, 1051
Hpy188I TCNGA 2 cut(s) 420, 532
Hpy188III TCNNGA 9 cut(s) 70, 254, 283, 347, 463, 656, 772, 983, 1028
Hpy8I GTNNAC 4 cut(s) 69, 382, 406, 1051
HpyAV CCTTC 3 cut(s) 653, 862, 940
HpyCH4III ACNGT 2 cut(s) 344, 557
HpyCH4IV ACGT 2 cut(s) 7, 241
HpyCH4V TGCA 6 cut(s) 31, 293, 848, 858, 1078, 1119
HpyF10VI GCNNNNNNNGC 1 cut(s) 760
HpyF3I CTNAG 4 cut(s) 123, 455, 864, 1068
HpySE526I ACGT 2 cut(s) 7, 241
Hsp92II CATG 4 cut(s) 257, 270, 697, 852
HspAI GCGC 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 207, 586
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 4 cut(s) 235, 302, 835, 867
MaeI CTAG 1 cut(s) 396
MaeII ACGT 2 cut(s) 7, 241
MaeIII GTNAC 5 cut(s) 344, 604, 625, 734, 826
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 7 cut(s) 239, 317, 758, 787, 796, 913, 925
MluCI AATT 5 cut(s) 487, 718, 786, 917, 1016
MlyI GAGTC 1 cut(s) 466
MnlI CCTC 4 cut(s) 535, 661, 774, 870
Mph1103I ATGCAT 1 cut(s) 850
MseI TTAA 4 cut(s) 87, 164, 321, 717
MslI CAYNNNNRTG 2 cut(s) 351, 1114
MspA1I CMGCKG 2 cut(s) 104, 1137
MspI CCGG 2 cut(s) 174, 698
MspR9I CCNGG 2 cut(s) 175, 451
Mva1269I GAATGC 1 cut(s) 765
MvaI CCWGG 1 cut(s) 451
MvnI CGCG 1 cut(s) 1055
MwoI GCNNNNNNNGC 1 cut(s) 760
NciI CCSGG 1 cut(s) 175
NdeII GATC 1 cut(s) 250
NlaIII CATG 4 cut(s) 257, 270, 697, 852
NlaIV GGNNCC 2 cut(s) 203, 588
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 850
NspI RCATGY 1 cut(s) 852
NspV TTCGAA 1 cut(s) 117
PagI TCATGA 1 cut(s) 253
PctI GAATGC 1 cut(s) 765
PfeI GAWTC 5 cut(s) 38, 170, 434, 659, 1031
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 1 cut(s) 215
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
Ppu21I YACGTR 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 2 cut(s) 203, 588
PvuII CAGCTG 1 cut(s) 1137
RsaI GTAC 3 cut(s) 383, 819, 968
RsaNI GTAC 3 cut(s) 382, 818, 967
RseI CAYNNNNRTG 2 cut(s) 351, 1114
SaqAI TTAA 4 cut(s) 87, 164, 321, 717
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 1 cut(s) 250
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 2 cut(s) 175, 451
SfaNI GCATC 4 cut(s) 235, 302, 835, 867
SfuI TTCGAA 1 cut(s) 117
SmiMI CAYNNNNRTG 2 cut(s) 351, 1114
SmlI CTYRAG 2 cut(s) 461, 665
SmoI CTYRAG 2 cut(s) 461, 665
Sse9I AATT 5 cut(s) 487, 718, 786, 917, 1016
SsiI CCGC 5 cut(s) 102, 263, 273, 620, 1055
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 173, 449
TaaI ACNGT 2 cut(s) 344, 557
TaiI ACGT 2 cut(s) 10, 244
TaqI TCGA 2 cut(s) 117, 444
TasI AATT 5 cut(s) 487, 718, 786, 917, 1016
TatI WGTACW 1 cut(s) 817
TfiI GAWTC 5 cut(s) 38, 170, 434, 659, 1031
Tru1I TTAA 4 cut(s) 87, 164, 321, 717
Tru9I TTAA 4 cut(s) 87, 164, 321, 717
TscAI CASTG 2 cut(s) 87, 1072
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 226, 591, 1098
TspRI CASTG 2 cut(s) 87, 1072
XceI RCATGY 1 cut(s) 852
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.