AT2G29910

F-box LRR-repeat protein At2g29930-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005679
Physical Location & Seq
Reverse (-)
12751147 .. 12753241
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29910.2

Sequence Viewer

Length: 1059 bp
ATGGGTTCCAGAGATTTAATTAGCAGTCTGCCAGATGAAATTCTTGGCAAAGTCCTGTCTTTGCTTCCGACAAAACGTGCTGCTTCCACAGCTGTTCTGTCTAAAAGGTGGAACAATCTGCCTGCTCTTGTAGACAAGCTTGATATCAATGACGCAATTGGTGGTCCTGGAGGCTTCCCTGAATTCATAGATAAAACACTTGCCCTCTTAACAAATTCTACCACCATTAAGAGAACCTCTCTGAATAATGAATTTCAGTATGGCGAGTCTCAAGTGAACACTTGGATTCGCAGTTTCCTCGAGCGCGGCTGCTTGCAACTTTACTTGAACGCTCAAAGTTTGTATACTATAGACACTGAGTTCTTCACGAGCAACACACTTGTTGAGCTCACTATAACCGGTGGGTTTTCTCCTGATGGTCTTCTTCCTCCTGGTGGCGTGTTTTTCCCAAAGCTTAAAACACTCTCTCTCGTTCTAATGACGTTTGTAGATTCTGATATGTATGAACTTTTCATCTCTGGCTGCCCTTTGCTTGAGGAATTCTTACTACGTAATGATGAAATTGAAATTCCCCCGGTTTGGAATGCGCTAGTTTCGAGTCCTTCCATCAAACGACTAACCATCGTTCACCATTTTCCCAATTACCGTGAGGCACACGATGGTTGTTGGTTCCGGACACCAAATCTCGTGTACCTTGACTATTCTAGCTATGTCCCGGATTGGTATGAGGTTGATTTAGGTTCCCTTGTAGAAGCTAGACTCGATCTTCGATCATGGGAGCGCCTTAGAGATGAGAAGGCTGGTGGTTATGGTGACTGTGATAGTGTTTATGATGATGAGGAATATCCAGATGATCCTATTTTGGGTGATGTTACCAATCTGGTTACAGGACTAAGCAACATTAAAACCCTTCACTTGTCTCCTGATTCTCTCGAGGTGTTCTACTTTTGTTGTAAATCAATGCCGGTGTTTCACAACCTCCTTACTTTATCTTTTGAGAGTGCCAAAAAAGAGGCTGGCCAGTGTTGCCACTTCTCATCAATAAGTCTCCTAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_2

Protein Analysis

352

Amino Acids

39.5

Weight (kDa)

4.67

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 40 1.4e-06 F-box domain
LRR_At5g56370 PF24758 93 - 210 4.2e-07 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 151 - 176 6.8e-06 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 132, 344
AccII CGCG 1 cut(s) 306
AccIII TCCGGA 1 cut(s) 672
AciI CCGC 1 cut(s) 306
AclWI GGATC 1 cut(s) 848
AcoI YGGCCR 1 cut(s) 1018
AcsI RAATTY 6 cut(s) 39, 182, 214, 251, 539, 567
AfaI GTAC 1 cut(s) 692
AfiI CCNNNNNNNGG 3 cut(s) 434, 579, 863
AgeI ACCGGT 1 cut(s) 398
AgsI TTSAA 2 cut(s) 328, 566
AjnI CCWGG 2 cut(s) 166, 430
AluBI AGCT 6 cut(s) 92, 139, 388, 454, 708, 755
AluI AGCT 6 cut(s) 92, 139, 388, 454, 708, 755
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 3 cut(s) 273, 924, 1052
AlwI GGATC 1 cut(s) 848
Ama87I CYCGRG 2 cut(s) 299, 932
Aor13HI TCCGGA 1 cut(s) 672
AoxI GGCC 1 cut(s) 1018
ApeKI GCWGC 3 cut(s) 80, 309, 522
ApoI RAATTY 6 cut(s) 39, 182, 214, 251, 539, 567
ArsI GACNNNNNNTTYG 2 cut(s) 750, 782
AsiGI ACCGGT 1 cut(s) 398
AspLEI GCGC 3 cut(s) 306, 589, 783
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 2 cut(s) 575, 716
AsuHPI GGTGA 3 cut(s) 620, 824, 878
AvaI CYCGRG 2 cut(s) 299, 932
AvaII GGWCC 1 cut(s) 164
BalI TGGCCA 1 cut(s) 1020
BanII GRGCYC 1 cut(s) 390
BauI CACGAG 2 cut(s) 367, 686
BbsI GAAGAC 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 3 cut(s) 67, 296, 509
BccI CCATC 4 cut(s) 410, 614, 629, 653
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BciT130I CCWGG 2 cut(s) 168, 432
BcnI CCSGG 2 cut(s) 575, 716
BcoDI GTCTC 3 cut(s) 273, 924, 1052
BfaI CTAG 4 cut(s) 590, 705, 756, 1057
BfmI CTRYAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 784
BisI GCNGC 4 cut(s) 81, 307, 310, 523
BlsI GCNGC 4 cut(s) 82, 308, 311, 524
Bme1390I CCNGG 4 cut(s) 168, 432, 575, 716
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 2 cut(s) 299, 932
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 3 cut(s) 7, 671, 742
BmrFI CCNGG 4 cut(s) 168, 432, 575, 716
BpiI GAAGAC 1 cut(s) 413
BplI GAGNNNNNCTC 2 cut(s) 223, 255
BpmI CTGGAG 1 cut(s) 189
BpuEI CTTGAG 2 cut(s) 255, 554
BpuMI CCSGG 2 cut(s) 575, 716
BsaAI YACGTR 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 573
BsaWI WCCGGW 2 cut(s) 398, 672
Bsc4I CCNNNNNNNGG 3 cut(s) 434, 579, 863
Bse118I RCCGGY 2 cut(s) 398, 964
Bse1I ACTGG 1 cut(s) 1021
BseAI TCCGGA 1 cut(s) 672
BseBI CCWGG 2 cut(s) 168, 432
BseDI CCNNGG 1 cut(s) 573
BseLI CCNNNNNNNGG 3 cut(s) 434, 579, 863
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 1021
BseXI GCAGC 3 cut(s) 67, 296, 509
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 1 cut(s) 1020
BshTI ACCGGT 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 2 cut(s) 299, 932
BsiSI CCGG 5 cut(s) 399, 575, 673, 716, 965
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 3 cut(s) 434, 579, 863
BsmAI GTCTC 3 cut(s) 273, 924, 1052
BsmFI GGGAC 1 cut(s) 698
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 1 cut(s) 1020
BsoBI CYCGRG 2 cut(s) 299, 932
Bsp1286I GDGCHC 1 cut(s) 390
Bsp13I TCCGGA 1 cut(s) 672
Bsp143I GATC 3 cut(s) 763, 770, 853
BspACI CCGC 1 cut(s) 306
BspANI GGCC 1 cut(s) 1020
BspCNI CTCAG 1 cut(s) 349
BspEI TCCGGA 1 cut(s) 672
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 3 cut(s) 7, 671, 742
BspPI GGATC 1 cut(s) 848
BsrFI RCCGGY 2 cut(s) 398, 964
BsrI ACTGG 1 cut(s) 1021
BssAI RCCGGY 2 cut(s) 398, 964
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 3 cut(s) 763, 770, 853
BssNAI GTATAC 1 cut(s) 345
BssSI CACGAG 2 cut(s) 367, 686
Bst1107I GTATAC 1 cut(s) 345
Bst2BI CACGAG 2 cut(s) 367, 686
Bst2UI CCWGG 2 cut(s) 168, 432
Bst4CI ACNGT 2 cut(s) 647, 818
BstBAI YACGTR 1 cut(s) 551
BstC8I GCNNGC 3 cut(s) 123, 314, 1018
BstDEI CTNAG 3 cut(s) 357, 785, 893
BstFNI CGCG 1 cut(s) 306
BstH2I RGCGCY 1 cut(s) 784
BstHHI GCGC 3 cut(s) 306, 589, 783
BstKTI GATC 3 cut(s) 766, 773, 856
BstMAI GTCTC 3 cut(s) 273, 924, 1052
BstMBI GATC 3 cut(s) 763, 770, 853
BstMWI GCNNNNNNNGC 2 cut(s) 89, 1026
BstNI CCWGG 2 cut(s) 168, 432
BstSCI CCNGG 4 cut(s) 166, 430, 573, 714
BstSFI CTRYAG 1 cut(s) 348
BstSNI TACGTA 1 cut(s) 551
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 3 cut(s) 67, 296, 509
BstV2I GAAGAC 1 cut(s) 413
BstZ17I GTATAC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 1020
BtsIMutI CAGTG 2 cut(s) 354, 1028
Cac8I GCNNGC 3 cut(s) 123, 314, 1018
CfoI GCGC 3 cut(s) 306, 589, 783
Cfr10I RCCGGY 2 cut(s) 398, 964
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 691
CspAI ACCGGT 1 cut(s) 398
CviAII CATG 1 cut(s) 774
CviQI GTAC 1 cut(s) 691
DdeI CTNAG 3 cut(s) 357, 785, 893
DpnI GATC 3 cut(s) 765, 772, 855
DpnII GATC 3 cut(s) 763, 770, 853
EaeI YGGCCR 1 cut(s) 1018
Ecl136II GAGCTC 1 cut(s) 388
Eco105I TACGTA 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 390
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 388
Eco88I CYCGRG 2 cut(s) 299, 932
EcoICRI GAGCTC 1 cut(s) 388
EcoRI GAATTC 2 cut(s) 182, 539
EcoRII CCWGG 2 cut(s) 166, 430
EcoRV GATATC 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 390
FaeI CATG 1 cut(s) 777
FaqI GGGAC 1 cut(s) 698
FatI CATG 1 cut(s) 773
FblI GTMKAC 2 cut(s) 132, 344
Fnu4HI GCNGC 4 cut(s) 81, 307, 310, 523
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 4 cut(s) 81, 307, 310, 523
FspBI CTAG 4 cut(s) 590, 705, 756, 1057
GlaI GCGC 3 cut(s) 305, 588, 782
GluI GCNGC 4 cut(s) 81, 307, 310, 523
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 784
HaeIII GGCC 1 cut(s) 1020
HapII CCGG 5 cut(s) 399, 575, 673, 716, 965
HgaI GACGC 1 cut(s) 161
HhaI GCGC 3 cut(s) 306, 589, 783
Hin1II CATG 1 cut(s) 777
Hin6I GCGC 3 cut(s) 304, 587, 781
HinP1I GCGC 3 cut(s) 304, 587, 781
HindIII AAGCTT 2 cut(s) 137, 452
HinfI GANTC 6 cut(s) 266, 286, 491, 598, 759, 926
HpaII CCGG 5 cut(s) 399, 575, 673, 716, 965
HphI GGTGA 3 cut(s) 620, 824, 878
Hpy166II GTNNAC 5 cut(s) 133, 277, 345, 628, 691
Hpy188I TCNGA 3 cut(s) 69, 243, 496
Hpy188III TCNNGA 7 cut(s) 9, 367, 413, 673, 848, 923, 932
Hpy8I GTNNAC 5 cut(s) 133, 277, 345, 628, 691
HpyAV CCTTC 3 cut(s) 612, 790, 920
HpyCH4III ACNGT 2 cut(s) 647, 818
HpyCH4IV ACGT 3 cut(s) 76, 482, 550
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 1026
HpyF3I CTNAG 3 cut(s) 357, 785, 893
HpySE526I ACGT 3 cut(s) 76, 482, 550
Hsp92II CATG 1 cut(s) 777
HspAI GCGC 3 cut(s) 304, 587, 781
Kpn2I TCCGGA 1 cut(s) 672
Kzo9I GATC 3 cut(s) 763, 770, 853
LmnI GCTCC 1 cut(s) 778
Lsp1109I GCAGC 3 cut(s) 67, 296, 509
MaeI CTAG 4 cut(s) 590, 705, 756, 1057
MaeII ACGT 3 cut(s) 76, 482, 550
MaeIII GTNAC 3 cut(s) 812, 871, 883
MalI GATC 3 cut(s) 765, 772, 855
MboI GATC 3 cut(s) 763, 770, 853
MboII GAAGA 4 cut(s) 355, 413, 416, 758
MfeI CAATTG 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 390
MlsI TGGCCA 1 cut(s) 1020
MluNI TGGCCA 1 cut(s) 1020
MlyI GAGTC 3 cut(s) 275, 607, 753
MmeI TCCRAC 1 cut(s) 92
Mox20I TGGCCA 1 cut(s) 1020
MroI TCCGGA 1 cut(s) 672
MscI TGGCCA 1 cut(s) 1020
MseI TTAA 5 cut(s) 17, 209, 228, 456, 903
Msp20I TGGCCA 1 cut(s) 1020
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 5 cut(s) 399, 575, 673, 716, 965
MspR9I CCNGG 4 cut(s) 168, 432, 575, 716
MunI CAATTG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 2 cut(s) 168, 432
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 89, 1026
NciI CCSGG 2 cut(s) 575, 716
NdeII GATC 3 cut(s) 763, 770, 853
NlaIII CATG 1 cut(s) 777
NlaIV GGNNCC 3 cut(s) 7, 671, 742
NmuCI GTSAC 1 cut(s) 812
PaeR7I CTCGAG 2 cut(s) 299, 932
PctI GAATGC 1 cut(s) 589
PfeI GAWTC 3 cut(s) 286, 491, 926
PfoI TCCNGGA 2 cut(s) 166, 714
PinAI ACCGGT 1 cut(s) 398
PkrI GCNGC 4 cut(s) 82, 308, 311, 524
PleI GAGTC 3 cut(s) 274, 606, 753
PpsI GAGTC 3 cut(s) 274, 606, 753
Ppu21I YACGTR 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 166, 430
PspGI CCWGG 2 cut(s) 166, 430
PspN4I GGNNCC 3 cut(s) 7, 671, 742
PspPI GGNCC 1 cut(s) 164
PspXI VCTCGAGB 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
SacI GAGCTC 1 cut(s) 390
SaqAI TTAA 5 cut(s) 17, 209, 228, 456, 903
SatI GCNGC 4 cut(s) 81, 307, 310, 523
Sau3AI GATC 3 cut(s) 763, 770, 853
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 3 cut(s) 275, 607, 753
ScrFI CCNGG 4 cut(s) 168, 432, 575, 716
SduI GDGCHC 1 cut(s) 390
SfcI CTRYAG 1 cut(s) 348
Sfr274I CTCGAG 2 cut(s) 299, 932
SinI GGWCC 1 cut(s) 164
SlaI CTCGAG 2 cut(s) 299, 932
SmlI CTYRAG 4 cut(s) 270, 299, 533, 932
SmoI CTYRAG 4 cut(s) 270, 299, 533, 932
SnaBI TACGTA 1 cut(s) 551
SsiI CCGC 1 cut(s) 306
SspMI CTAG 4 cut(s) 590, 705, 756, 1057
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 4 cut(s) 166, 430, 573, 714
TaaI ACNGT 2 cut(s) 647, 818
TaiI ACGT 3 cut(s) 79, 485, 553
TaqI TCGA 5 cut(s) 300, 596, 762, 769, 933
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 3 cut(s) 286, 491, 926
Tru1I TTAA 5 cut(s) 17, 209, 228, 456, 903
Tru9I TTAA 5 cut(s) 17, 209, 228, 456, 903
TscAI CASTG 2 cut(s) 361, 1028
TseFI GTSAC 1 cut(s) 812
TseI GCWGC 3 cut(s) 80, 309, 522
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 6 cut(s) 51, 175, 264, 502, 519, 573
TspRI CASTG 2 cut(s) 361, 1028
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 6 cut(s) 39, 182, 214, 251, 539, 567
XhoI CTCGAG 2 cut(s) 299, 932
XmiI GTMKAC 2 cut(s) 132, 344
XspI CTAG 4 cut(s) 590, 705, 756, 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.