AT2G33796

F-box LRR-repeat protein At2g29930-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
14299709 .. 14300252
544 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33796.1

Sequence Viewer

Length: 330 bp
ATGGGCTTGCACTGTGTAAGTAATCAGGGAGTCTTCATTGATCGAAATGAAGTGAAGGTGTTGGAGATATATGGGTATAGAGGACGTGATAGAGAGCTCAGACAAGTGACGTGCTTTTTGCGGGAAATGCGGTTTCTTCAAGTGATGAAAGTCGAAATTGATGCTGATGATGATAACAAGAAACAGCAACTCATTAATCACCTTCTTGCTCTGCCCATACGTTCATCTAAGTTCCAAATCCAGTTCTTTTCAACATTCAATTGGTTTATATGGTCTTATGAAACTGATGTTTGCATTGTTCACAAATGTTTAGAAGAATCAGTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.98

Weight (kDa)

6.28

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 121, 130
AgsI TTSAA 3 cut(s) 140, 252, 259
AjiI CACGTC 2 cut(s) 86, 111
AjuI GAANNNNNNNTTGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 1 cut(s) 99
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
AseI ATTAAT 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 191
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 99
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BmgBI CACGTC 2 cut(s) 86, 111
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 121, 130
BspCNI CTCAG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 241
BssMI GATC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 98, 228
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 25
BtrI CACGTC 2 cut(s) 86, 111
BtsIMutI CAGTG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 8
CviJI RGCY 2 cut(s) 6, 97
CviKI_1 RGCY 2 cut(s) 6, 97
DdeI CTNAG 2 cut(s) 98, 228
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 99
FaiI YATR 7 cut(s) 70, 72, 78, 218, 269, 271, 279
FauI CCCGC 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 99
HinfI GANTC 2 cut(s) 30, 317
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 49, 212
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 3 cut(s) 85, 110, 220
HpyCH4V TGCA 2 cut(s) 10, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 2 cut(s) 98, 228
HpySE526I ACGT 3 cut(s) 85, 110, 220
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 2 cut(s) 11, 254
LweI GCATC 1 cut(s) 151
MaeII ACGT 3 cut(s) 85, 110, 220
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 3 cut(s) 25, 128, 326
MfeI CAATTG 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 2 cut(s) 156, 259
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 1 cut(s) 74
MseI TTAA 1 cut(s) 195
MunI CAATTG 1 cut(s) 259
MwoI GCNNNNNNNGC 1 cut(s) 127
NdeII GATC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 317
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PshBI ATTAAT 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 99
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 1 cut(s) 40
SchI GAGTC 1 cut(s) 39
SduI GDGCHC 1 cut(s) 99
SetI ASST 6 cut(s) 60, 88, 99, 113, 204, 223
SfaNI GCATC 1 cut(s) 151
Sse9I AATT 2 cut(s) 156, 259
SsiI CCGC 2 cut(s) 121, 130
SstI GAGCTC 1 cut(s) 99
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 3 cut(s) 88, 113, 223
TaqI TCGA 2 cut(s) 43, 153
TasI AATT 2 cut(s) 156, 259
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 5 cut(s) 25, 63, 161, 213, 294
TspRI CASTG 1 cut(s) 17
VspI ATTAAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.