Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005679

Physical Location & Seq

Genomic Coordinates Forward (+)

4040937 .. 4041176

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCAAGAGATTTCTGAGTGTGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGGAATGTTGGAATGTCTTGAAACTGTGAAAGTTGGTGTTGTGGACGCAGACAACAACAGTAAGCTCTTGCGAGCTAATCTGCTGTCTCTCCCCAAACTTTCATCAGAATGCAACATCCAATTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001654 GO:0003006 GO:0003008 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0005911 GO:0005923 GO:0005929 GO:0006996 GO:0007010 GO:0007154 GO:0007155 GO:0007165 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007423 GO:0007568 GO:0007588 GO:0007610 GO:0007617 GO:0007618 GO:0007626 GO:0007632 GO:0008104 GO:0008150 GO:0008340 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0010259 GO:0015630 GO:0016020 GO:0016043 GO:0019098 GO:0019953 GO:0022008 GO:0022406 GO:0022412 GO:0022414 GO:0022607 GO:0022610 GO:0023041 GO:0023052 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030054 GO:0030154 GO:0030182 GO:0031514 GO:0032391 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034606 GO:0034607 GO:0034613 GO:0035178 GO:0035845 GO:0035869 GO:0036064 GO:0042461 GO:0042995 GO:0043005 GO:0043010 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043296 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044782 GO:0046530 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048522 GO:0048609 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051640 GO:0051641 GO:0051704 GO:0051716 GO:0060041 GO:0060179 GO:0060271 GO:0065007 GO:0070160 GO:0070727 GO:0070925 GO:0071840 GO:0097458 GO:0097546 GO:0097711 GO:0097730 GO:0097731 GO:0097733 GO:0098609 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:0140056 GO:1901888 GO:1901890 GO:1903348 GO:1905515 GO:2000810

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1

Protein Analysis

63

Amino Acids

7.04

Weight (kDa)

4.64

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21990 AT1G47920 AT1G48390 AT1G48390 AT1G48390 AT1G48400 AT1G48400 AT1G64540 AT1G64540 AT2G29910 AT2G29910 AT2G29910 AT2G29910 AT2G29910 AT2G29910 AT2G29910 AT2G29930 AT2G29930 AT2G29930 AT2G33796 AT4G27050 AT4G27050 AT4G27050 AT4G27050 AT4G27050 AT5G12450 AT5G35995 AT5G35995

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	35, 83
AluBI	AGCT	3 cut(s)	40, 127, 137
AluI	AGCT	3 cut(s)	40, 127, 137
Alw26I	GTCTC	2 cut(s)	46, 153
AlwI	GGATC	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	46, 153
BseGI	GGATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	6
BsmAI	GTCTC	2 cut(s)	46, 153
BsmI	GAATGC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	7
BspPI	GGATC	1 cut(s)	51
BssMI	GATC	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	88, 122
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	2 cut(s)	46, 153
BstMBI	GATC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	135
CseI	GACGC	1 cut(s)	116
CviJI	RGCY	3 cut(s)	40, 127, 137
CviKI_1	RGCY	3 cut(s)	40, 127, 137
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
FokI	GGATG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	4 cut(s)	16, 48, 169, 191
Hpy188III	TCNNGA	2 cut(s)	35, 80
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	88, 122
HpyCH4V	TGCA	2 cut(s)	4, 174
HpyF3I	CTNAG	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	1 cut(s)	26
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MluCI	AATT	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	43
PctI	GAATGC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	43
SetI	ASST	4 cut(s)	28, 42, 129, 139
SgeI	CNNG	7 cut(s)	17, 47, 53, 73, 92, 142, 146
SmiMI	CAYNNNNRTG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	88, 122
TasI	AATT	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	153, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.