AT1G48390

positive regulation of bicellular tight junction assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005679
Physical Location & Seq
Reverse (-)
17879369 .. 17881251
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48390.3

Sequence Viewer

Length: 1242 bp
ATGGTTGTTTATCCCAACGAAGAAGCTGAAAATGGTTCACTTCGCTTCGTAGATTTCGTAAACAAGACATTTGCTCTGTTAGGCAATTCTCCCATCAAAAAGTTCTCTCTGCGTCATGAGCCTAGACTTTACTGTGTAGATGCATACTTACGTTGGATTTTCACTGCAATGGAACAAGAACGTGGTTTACTGGAACTACACTTGTACGCGGATCGATATTATTATCCTGTTGGTATAGAGAGAGAGCTGTTCACGAGCAACACACTGGTTAAGCTCACACTATCCGGTAGATATGATTTTCAAGTTGAGACTGTGTTTCTCCCTGCCCTTAAATCACTTTCCCTCTCATCTTCTTTCGAGATTGGTTTTGACAAATATTGTAACCTCCTCGATGGCTTCCCTGCATTGGAAGAGTTATACATTCGTGAAGCTGTATCTGAACTTTCTAATGCTTTACTATCTAGCGGTACGTTTGTGAAATGTGCATCCATCAAGAGACTTGTGGTTTTTACCGATTGTCCAAAGTTTAAAGAGGATGAGGATCACCAAGAACCTTGTTTTATAGCACCAAGTCTTGTCTACCTTGACTATTCTAGTTATCTCTCCGAAAATTATGACCTTATTGATTTGAATTCGCTTGTTGAAGCCAGGCTGAATCTCAGACTATTGGAGTCATTTAACAATTATGGTTCGTCTGATAATGATGGTGATGTTTATGGTTGGGATTTTAATGTTCCTTTTGATTATTATGGTGATGTTACAAATCTAGTTGCGGGTATAACCAACATTACAACCCTTCACTTGTCTCCTGATTCCCTTGAGGTATTTCATTTCCGCTGTAAATCCATACCGGTGTTCAACAATCTCCTCCTTAATTTATCTATTGAGAGTAACAAGCGAAATGGTTGGCAAGTAATGCCACTTTTGATCAGGAGTTGTCCAAATCTGCACACTTTAGTCATCAAGGGTTTTGTCCACAGAGTAACAAGTAAATGCGGAGACGCATGTGCTTGCATCCCTAAGAAGCAGAGGAAGATTGGAAAGAAAGAGGAGATTTCAGAGTATGGAGGTTCTTTTCAAGAGCTGGAACAGATGAGACATTTCTTGGGCAAGTTGGAACGTCTTGAAACTGTGAAAGTTGGTGTTCACGCAGAAAACAATAACAACAATGAGTTCTTGCGAGCTAATCTACTGACTCTCCCCAGACTCTCATCAAAGTGCAACAACATCCAATTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001654 GO:0003006 GO:0003008 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0005911 GO:0005923 GO:0005929 GO:0006996 GO:0007010 GO:0007154 GO:0007155 GO:0007165 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007423 GO:0007568 GO:0007588 GO:0007610 GO:0007617 GO:0007618 GO:0007626 GO:0007632 GO:0008104 GO:0008150 GO:0008340 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0010259 GO:0015630 GO:0016020 GO:0016043 GO:0019098 GO:0019953 GO:0022008 GO:0022406 GO:0022412 GO:0022414 GO:0022607 GO:0022610 GO:0023041 GO:0023052 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030054 GO:0030154 GO:0030182 GO:0031514 GO:0032391 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034606 GO:0034607 GO:0034613 GO:0035178 GO:0035845 GO:0035869 GO:0036064 GO:0042461 GO:0042995 GO:0043005 GO:0043010 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043296 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044782 GO:0046530 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048522 GO:0048609 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051640 GO:0051641 GO:0051704 GO:0051716 GO:0060041 GO:0060179 GO:0060271 GO:0065007 GO:0070160 GO:0070727 GO:0070925 GO:0071840 GO:0097458 GO:0097546 GO:0097711 GO:0097730 GO:0097731 GO:0097733 GO:0098609 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:0140056 GO:1901888 GO:1901890 GO:1903348 GO:1905515 GO:2000810
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SH3_1

Protein Analysis

413

Amino Acids

47.29

Weight (kDa)

5.6

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 579
AccII CGCG 1 cut(s) 209
AciI CCGC 5 cut(s) 209, 465, 773, 835, 996
AclWI GGATC 2 cut(s) 219, 549
AcsI RAATTY 1 cut(s) 631
AfaI GTAC 2 cut(s) 206, 469
AfiI CCNNNNNNNGG 1 cut(s) 406
AgeI ACCGGT 1 cut(s) 850
AgsI TTSAA 6 cut(s) 302, 631, 644, 859, 1079, 1127
AjnI CCWGG 1 cut(s) 647
AluBI AGCT 6 cut(s) 26, 247, 274, 431, 1084, 1184
AluI AGCT 6 cut(s) 26, 247, 274, 431, 1084, 1184
Alw26I GTCTC 5 cut(s) 302, 490, 810, 993, 1090
AlwI GGATC 2 cut(s) 219, 549
ApoI RAATTY 1 cut(s) 631
AsiGI ACCGGT 1 cut(s) 850
AsuHPI GGTGA 3 cut(s) 536, 719, 764
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BauI CACGAG 1 cut(s) 253
BccI CCATC 4 cut(s) 101, 386, 497, 698
BciT130I CCWGG 1 cut(s) 649
BclI TGATCA 1 cut(s) 927
BcoDI GTCTC 5 cut(s) 302, 490, 810, 993, 1090
BfaI CTAG 4 cut(s) 123, 462, 594, 767
Bme1390I CCNGG 1 cut(s) 649
BmrFI CCNGG 1 cut(s) 649
BmsI GCATC 3 cut(s) 130, 494, 1023
BpuEI CTTGAG 1 cut(s) 839
Bsa29I ATCGAT 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 540
BsaWI WCCGGW 2 cut(s) 284, 850
BsaXI ACNNNNNCTCC 2 cut(s) 1182, 1212
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse118I RCCGGY 1 cut(s) 850
Bse1I ACTGG 2 cut(s) 195, 270
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 1 cut(s) 649
BseCI ATCGAT 1 cut(s) 214
BseGI GGATG 4 cut(s) 485, 541, 1014, 1227
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 673
BseNI ACTGG 2 cut(s) 195, 270
BseRI GAGGAG 3 cut(s) 377, 857, 1064
BsgI GTGCAG 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 209
BshTI ACCGGT 1 cut(s) 850
BshVI ATCGAT 1 cut(s) 214
BsiSI CCGG 2 cut(s) 285, 851
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 5 cut(s) 302, 490, 810, 993, 1090
BsmBI CGTCTC 1 cut(s) 993
Bsp143I GATC 3 cut(s) 211, 541, 927
BspACI CCGC 5 cut(s) 209, 465, 773, 835, 996
BspCNI CTCAG 1 cut(s) 672
BspDI ATCGAT 1 cut(s) 214
BspFNI CGCG 1 cut(s) 209
BspHI TCATGA 1 cut(s) 115
BspPI GGATC 2 cut(s) 219, 549
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 850
BsrI ACTGG 2 cut(s) 195, 270
BssAI RCCGGY 1 cut(s) 850
BssMI GATC 3 cut(s) 211, 541, 927
BssSI CACGAG 1 cut(s) 253
Bst2BI CACGAG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 649
Bst4CI ACNGT 3 cut(s) 134, 313, 1132
Bst6I CTCTTC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 916
BstC8I GCNNGC 2 cut(s) 1012, 1182
BstDEI CTNAG 2 cut(s) 659, 1020
BstF5I GGATG 4 cut(s) 485, 541, 1014, 1227
BstFNI CGCG 1 cut(s) 209
BstKTI GATC 3 cut(s) 214, 544, 930
BstMAI GTCTC 5 cut(s) 302, 490, 810, 993, 1090
BstMBI GATC 3 cut(s) 211, 541, 927
BstMWI GCNNNNNNNGC 2 cut(s) 118, 916
BstNI CCWGG 1 cut(s) 649
BstNSI RCATGY 1 cut(s) 1008
BstSCI CCNGG 1 cut(s) 647
BstUI CGCG 1 cut(s) 209
Bsu15I ATCGAT 1 cut(s) 214
BsuTUI ATCGAT 1 cut(s) 214
BtsCI GGATG 4 cut(s) 485, 541, 1014, 1227
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 263
Cac8I GCNNGC 2 cut(s) 1012, 1182
CciI TCATGA 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 850
ClaI ATCGAT 1 cut(s) 214
CseI GACGC 2 cut(s) 101, 1010
Csp6I GTAC 2 cut(s) 205, 468
CspAI ACCGGT 1 cut(s) 850
CviAII CATG 2 cut(s) 116, 1005
CviQI GTAC 2 cut(s) 205, 468
DdeI CTNAG 2 cut(s) 659, 1020
DpnI GATC 3 cut(s) 213, 543, 929
DpnII GATC 3 cut(s) 211, 541, 927
DraI TTTAAA 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 631
EcoRII CCWGG 1 cut(s) 647
EcoT22I ATGCAT 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 993
FaeI CATG 2 cut(s) 119, 1008
FatI CATG 2 cut(s) 115, 1004
FauI CCCGC 1 cut(s) 766
FbaI TGATCA 1 cut(s) 927
FblI GTMKAC 1 cut(s) 579
FokI GGATG 4 cut(s) 472, 548, 1001, 1214
FspBI CTAG 4 cut(s) 123, 462, 594, 767
HapII CCGG 2 cut(s) 285, 851
HgaI GACGC 2 cut(s) 101, 1010
Hin1II CATG 2 cut(s) 119, 1008
HinfI GANTC 5 cut(s) 655, 671, 812, 1195, 1206
HpaII CCGG 2 cut(s) 285, 851
HphI GGTGA 3 cut(s) 536, 719, 764
Hpy166II GTNNAC 7 cut(s) 38, 61, 188, 252, 580, 976, 1147
Hpy188I TCNGA 6 cut(s) 439, 607, 662, 697, 1060, 1241
Hpy188III TCNNGA 9 cut(s) 116, 253, 358, 425, 493, 809, 931, 1079, 1124
Hpy8I GTNNAC 7 cut(s) 38, 61, 188, 252, 580, 976, 1147
HpyAV CCTTC 1 cut(s) 806
HpyCH4III ACNGT 3 cut(s) 134, 313, 1132
HpyCH4IV ACGT 4 cut(s) 151, 181, 470, 1120
HpyCH4V TGCA 7 cut(s) 143, 167, 404, 485, 949, 1014, 1221
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 916
HpyF3I CTNAG 2 cut(s) 659, 1020
HpySE526I ACGT 4 cut(s) 151, 181, 470, 1120
Hsp92II CATG 2 cut(s) 119, 1008
Ksp22I TGATCA 1 cut(s) 927
Kzo9I GATC 3 cut(s) 211, 541, 927
LweI GCATC 3 cut(s) 130, 494, 1023
MaeI CTAG 4 cut(s) 123, 462, 594, 767
MaeII ACGT 4 cut(s) 151, 181, 470, 1120
MaeIII GTNAC 4 cut(s) 380, 757, 890, 982
MalI GATC 3 cut(s) 213, 543, 929
MboI GATC 3 cut(s) 211, 541, 927
MboII GAAGA 4 cut(s) 32, 342, 422, 1045
MluCI AATT 6 cut(s) 85, 610, 631, 682, 874, 1232
MlyI GAGTC 3 cut(s) 680, 1189, 1200
MmeI TCCRAC 2 cut(s) 134, 1095
Mph1103I ATGCAT 1 cut(s) 145
MseI TTAA 6 cut(s) 270, 330, 528, 678, 729, 873
MslI CAYNNNNRTG 3 cut(s) 167, 851, 1216
MspA1I CMGCKG 1 cut(s) 837
MspI CCGG 2 cut(s) 285, 851
MspR9I CCNGG 1 cut(s) 649
MvaI CCWGG 1 cut(s) 649
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 118, 916
NdeII GATC 3 cut(s) 211, 541, 927
NlaIII CATG 2 cut(s) 119, 1008
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 1 cut(s) 1008
PagI TCATGA 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 2 cut(s) 655, 812
PinAI ACCGGT 1 cut(s) 850
PleI GAGTC 3 cut(s) 679, 1189, 1200
PpsI GAGTC 3 cut(s) 679, 1189, 1200
Psp6I CCWGG 1 cut(s) 647
PspGI CCWGG 1 cut(s) 647
PsrI GAACNNNNNNTAC 2 cut(s) 171, 203
RsaI GTAC 2 cut(s) 206, 469
RsaNI GTAC 2 cut(s) 205, 468
RseI CAYNNNNRTG 3 cut(s) 167, 851, 1216
SaqAI TTAA 6 cut(s) 270, 330, 528, 678, 729, 873
Sau3AI GATC 3 cut(s) 211, 541, 927
SchI GAGTC 3 cut(s) 680, 1189, 1200
ScrFI CCNGG 1 cut(s) 649
SfaNI GCATC 3 cut(s) 130, 494, 1023
SmiMI CAYNNNNRTG 3 cut(s) 167, 851, 1216
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 6 cut(s) 85, 610, 631, 682, 874, 1232
SsiI CCGC 5 cut(s) 209, 465, 773, 835, 996
SspI AATATT 1 cut(s) 377
SspMI CTAG 4 cut(s) 123, 462, 594, 767
StyD4I CCNGG 1 cut(s) 647
TaaI ACNGT 3 cut(s) 134, 313, 1132
TaiI ACGT 4 cut(s) 154, 184, 473, 1123
TaqI TCGA 3 cut(s) 214, 357, 390
TasI AATT 6 cut(s) 85, 610, 631, 682, 874, 1232
TfiI GAWTC 2 cut(s) 655, 812
Tru1I TTAA 6 cut(s) 270, 330, 528, 678, 729, 873
Tru9I TTAA 6 cut(s) 270, 330, 528, 678, 729, 873
TscAI CASTG 2 cut(s) 169, 270
TspDTI ATGAA 2 cut(s) 818, 1225
TspRI CASTG 2 cut(s) 169, 270
XapI RAATTY 1 cut(s) 631
XceI RCATGY 1 cut(s) 1008
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 4 cut(s) 123, 462, 594, 767
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.