AT2G29930

F-box LRR-repeat protein At2g29930-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005679
Physical Location & Seq
Reverse (-)
12756326 .. 12758558
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29930.1

Sequence Viewer

Length: 1380 bp
ATGTCTACCAAAAGAGTAGATATGGGTTCTAGAGATTATATTAGCAGTCTACCAGATGAGATTCTTGGCAAAATCTTATCATTGTTTTGCACAAATCGTGCTGCTTGCACATCAGTTCTGTCCAAAAGGTGGAGGAATCTGCTCGAGCTTGTAGACAACCTTGATTTGAATGACGCATATGGTAATCATCAATACTTCTGTGATTTTGTGGACAGAACACTTGCTCTCTTAAGCAATTCTACCACCGTCAAGAGATTCTCCCTAAATTGTGCATTTCACAATGACGCTTCTCGGGTGAACAGTTGGATACGCACTGTCTTCGATCGCGGCTTCTTGGATCTTCACTTGGAGACCGCACATATGCATCGTATAGACACTGAGTTCTTCACGAGCAATACACTTCTTGAGCTCACAATATGCGGTGGGTTTTATGCTGAGGGTCGTCTTCCTCCTGGGAGAGTGTTTTTTCCAGCGCTTAAATCACTCTCTCTAGTTTCAGTGGAGTTTACAGATACTTTGATGTATCAGAATTTCATCTCTGGCTGCCCTGTGCTTGAGGAATTATTCCTACATTATGATAATGAGACACAATGCCCGGCTTGGAAAGGGCTCGTATCGAGTCCTTCCATCAAACGGCTGAACATCTATGACAATCCTTCCGAGTTACGTTATGAGGCTTACAAATGTTGCTTTCAGATACCCAGCCTTGTGTACCTTGACTATTCTAGTTATGTGGCGAAACAGTATGCGGTTGATCTGGTTTCCCTTGAAGAAGCTAGACTCAATATCCGATATCCGGAGAGACTTGTAGATCAGAATGAGGATATTTTTGGTGATGTTACGGATTTGCTTAAAGGGATAAGCAATGTTAAAACCCTTCATTTATCTTCTGATTCTCTTGAGGTGTTTCACTTGTGCTGTGATACAATGCCGGTGTTTCATAACCTCCTTACTTTATCTTTTGAGAGTGACGAAGAAATAGGCTGGCAAGTGGTGCCACTTCTCCTCAACAAATCTCCAAACCTAGAAACTTTAGTCATCAAGAGTCTTGTGCACCAAGTAACAGATATGTGCGGGAACGCCTGCGCTTGCATCTCTAAGAGGAGGAAGAAAAAGAAGAAGACGACGGAGGATGACGAATGTTGTTTATCTACATGTCAAGTCAAAGTGCTAAATATTTCAGGGTATCGAGGTACTTGTAAAGAGCTGAAACAAATGAGGCATTTCTTGGAGAATTTGAAATGTCTTGAAACTGTCAATGTGGGTGTTGATGTGAAGCGCAGAGAATATAAGAATGGTAATAACAAGTACCAGAGGATCACCAATGCTGTTATGGAGCTTCCTAGATTTTCATCAAACTGTCAGATCCAATTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

459

Amino Acids

52.63

Weight (kDa)

6.29

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 100 - 216 1.2e-08 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 158 - 183 5.4e-07 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 994
AccB7I CCANNNNNTGG 1 cut(s) 129
AccI GTMKAC 3 cut(s) 5, 49, 153
AccII CGCG 1 cut(s) 327
AccIII TCCGGA 1 cut(s) 796
AciI CCGC 5 cut(s) 327, 354, 420, 749, 1074
AclWI GGATC 3 cut(s) 345, 1325, 1360
AcsI RAATTY 2 cut(s) 529, 1234
AfaI GTAC 3 cut(s) 713, 1195, 1310
AfeI AGCGCT 1 cut(s) 474
AfiI CCNNNNNNNGG 3 cut(s) 129, 633, 796
AflII CTTAAG 1 cut(s) 229
AflIII ACRYGT 1 cut(s) 1154
AgsI TTSAA 4 cut(s) 169, 770, 1240, 1250
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 5 cut(s) 148, 409, 776, 1207, 1339
AluI AGCT 5 cut(s) 148, 409, 776, 1207, 1339
Alw21I GWGCWC 2 cut(s) 411, 1056
Alw26I GTCTC 3 cut(s) 344, 578, 796
Alw44I GTGCAC 1 cut(s) 1052
AlwI GGATC 3 cut(s) 345, 1325, 1360
Ama87I CYCGRG 2 cut(s) 143, 291
Aor13HI TCCGGA 1 cut(s) 796
Aor51HI AGCGCT 1 cut(s) 474
ApaLI GTGCAC 1 cut(s) 1052
ApeKI GCWGC 2 cut(s) 101, 543
ApoI RAATTY 2 cut(s) 529, 1234
AspLEI GCGC 3 cut(s) 475, 1088, 1281
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 3 cut(s) 307, 845, 1312
AvaI CYCGRG 2 cut(s) 143, 291
BaeGI GKGCMC 1 cut(s) 1056
BanI GGYRCC 1 cut(s) 994
BanII GRGCYC 2 cut(s) 411, 612
BauI CACGAG 1 cut(s) 388
BbsI GAAGAC 3 cut(s) 310, 437, 1127
Bbv12I GWGCWC 2 cut(s) 411, 1056
BbvCI CCTCAGC 1 cut(s) 435
BbvI GCAGC 2 cut(s) 88, 530
BccI CCATC 1 cut(s) 635
BceAI ACGGC 1 cut(s) 650
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 1 cut(s) 453
BciVI GTATCC 1 cut(s) 300
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 3 cut(s) 344, 578, 796
BfaI CTAG 6 cut(s) 30, 491, 726, 777, 1025, 1344
BfoI RGCGCY 1 cut(s) 476
BfrI CTTAAG 1 cut(s) 229
BfuI GTATCC 1 cut(s) 300
BisI GCNGC 3 cut(s) 102, 328, 544
BlsI GCNGC 3 cut(s) 103, 329, 545
Bme1390I CCNGG 2 cut(s) 453, 596
BmeT110I CYCGRG 2 cut(s) 143, 291
BmiI GGNNCC 1 cut(s) 996
BmrFI CCNGG 2 cut(s) 453, 596
BmsI GCATC 2 cut(s) 373, 1101
BpiI GAAGAC 3 cut(s) 310, 437, 1127
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 3 cut(s) 425, 575, 920
BpuMI CCSGG 1 cut(s) 596
BsaBI GATNNNNATC 1 cut(s) 1351
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 452
BsaWI WCCGGW 1 cut(s) 796
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 633, 796
Bse118I RCCGGY 1 cut(s) 931
Bse3DI GCAATG 1 cut(s) 871
Bse8I GATNNNNATC 1 cut(s) 1351
BseAI TCCGGA 1 cut(s) 796
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 1 cut(s) 1138
BseJI GATNNNNATC 1 cut(s) 1351
BseLI CCNNNNNNNGG 3 cut(s) 129, 633, 796
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 2 cut(s) 369, 426
BseRI GAGGAG 2 cut(s) 995, 1117
BseSI GKGCMC 1 cut(s) 1056
BseXI GCAGC 2 cut(s) 88, 530
BseYI CCCAGC 1 cut(s) 701
Bsh1236I CGCG 1 cut(s) 327
Bsh1285I CGRYCG 1 cut(s) 325
BshNI GGYRCC 1 cut(s) 994
BsiEI CGRYCG 1 cut(s) 325
BsiHKAI GWGCWC 2 cut(s) 411, 1056
BsiHKCI CYCGRG 2 cut(s) 143, 291
BsiSI CCGG 3 cut(s) 596, 797, 932
BslI CCNNNNNNNGG 3 cut(s) 129, 633, 796
BsmAI GTCTC 3 cut(s) 344, 578, 796
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 2 cut(s) 143, 291
Bsp1286I GDGCHC 3 cut(s) 411, 612, 1056
Bsp13I TCCGGA 1 cut(s) 796
Bsp143I GATC 6 cut(s) 322, 337, 754, 811, 1317, 1365
BspACI CCGC 5 cut(s) 327, 354, 420, 749, 1074
BspCNI CTCAG 2 cut(s) 370, 427
BspEI TCCGGA 1 cut(s) 796
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 996
BspPI GGATC 3 cut(s) 345, 1325, 1360
BspT107I GGYRCC 1 cut(s) 994
BspTI CTTAAG 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 871
BsrFI RCCGGY 1 cut(s) 931
BssAI RCCGGY 1 cut(s) 931
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 6 cut(s) 322, 337, 754, 811, 1317, 1365
BssSI CACGAG 1 cut(s) 388
Bst2BI CACGAG 1 cut(s) 388
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 6 cut(s) 247, 302, 316, 744, 1255, 1361
BstAFI CTTAAG 1 cut(s) 229
BstAPI GCANNNNNTGC 1 cut(s) 994
BstC8I GCNNGC 4 cut(s) 106, 986, 1084, 1090
BstDEI CTNAG 3 cut(s) 378, 435, 1098
BstF5I GGATG 1 cut(s) 1138
BstFNI CGCG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 3 cut(s) 475, 1088, 1281
BstKTI GATC 6 cut(s) 325, 340, 757, 814, 1320, 1368
BstMAI GTCTC 3 cut(s) 344, 578, 796
BstMBI GATC 6 cut(s) 322, 337, 754, 811, 1317, 1365
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 1 cut(s) 994
BstNI CCWGG 1 cut(s) 453
BstNSI RCATGY 1 cut(s) 1158
BstSCI CCNGG 2 cut(s) 451, 594
BstSLI GKGCMC 1 cut(s) 1056
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 88, 530
BstV2I GAAGAC 3 cut(s) 310, 437, 1127
BstX2I RGATCY 2 cut(s) 337, 1365
BstYI RGATCY 2 cut(s) 337, 1365
BsuI GTATCC 1 cut(s) 300
BtsCI GGATG 1 cut(s) 1138
BtsIMutI CAGTG 3 cut(s) 312, 375, 504
Cac8I GCNNGC 4 cut(s) 106, 986, 1084, 1090
CfoI GCGC 3 cut(s) 475, 1088, 1281
Cfr10I RCCGGY 1 cut(s) 931
CseI GACGC 2 cut(s) 182, 293
Csp6I GTAC 3 cut(s) 712, 1194, 1309
CviAII CATG 1 cut(s) 1155
CviQI GTAC 3 cut(s) 712, 1194, 1309
DdeI CTNAG 3 cut(s) 378, 435, 1098
DpnI GATC 6 cut(s) 324, 339, 756, 813, 1319, 1367
DpnII GATC 6 cut(s) 322, 337, 754, 811, 1317, 1365
Ecl136II GAGCTC 1 cut(s) 409
Eco24I GRGCYC 2 cut(s) 411, 612
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 794
Eco47III AGCGCT 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 409
Eco88I CYCGRG 2 cut(s) 143, 291
EcoICRI GAGCTC 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 451
EcoRV GATATC 1 cut(s) 794
EcoT22I ATGCAT 1 cut(s) 366
EcoT38I GRGCYC 2 cut(s) 411, 612
FaeI CATG 1 cut(s) 1158
FatI CATG 1 cut(s) 1154
FauI CCCGC 1 cut(s) 1067
FauNDI CATATG 2 cut(s) 178, 360
FblI GTMKAC 3 cut(s) 5, 49, 153
Fnu4HI GCNGC 3 cut(s) 102, 328, 544
FokI GGATG 1 cut(s) 1145
FriOI GRGCYC 2 cut(s) 411, 612
Fsp4HI GCNGC 3 cut(s) 102, 328, 544
FspBI CTAG 6 cut(s) 30, 491, 726, 777, 1025, 1344
GlaI GCGC 3 cut(s) 474, 1087, 1280
GluI GCNGC 3 cut(s) 102, 328, 544
GsaI CCCAGC 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 476
HapII CCGG 3 cut(s) 596, 797, 932
HgaI GACGC 2 cut(s) 182, 293
HhaI GCGC 3 cut(s) 475, 1088, 1281
Hin1II CATG 1 cut(s) 1158
Hin6I GCGC 3 cut(s) 473, 1086, 1279
HinP1I GCGC 3 cut(s) 473, 1086, 1279
HinfI GANTC 7 cut(s) 61, 136, 255, 619, 780, 893, 1045
HpaII CCGG 3 cut(s) 596, 797, 932
HphI GGTGA 3 cut(s) 307, 845, 1312
Hpy166II GTNNAC 8 cut(s) 6, 50, 154, 211, 298, 507, 712, 1054
Hpy188I TCNGA 8 cut(s) 528, 661, 696, 791, 816, 892, 1365, 1379
Hpy188III TCNNGA 8 cut(s) 30, 250, 388, 404, 797, 899, 1042, 1247
Hpy8I GTNNAC 8 cut(s) 6, 50, 154, 211, 298, 507, 712, 1054
Hpy99I CGWCG 1 cut(s) 1129
HpyAV CCTTC 3 cut(s) 633, 666, 887
HpyCH4III ACNGT 6 cut(s) 247, 302, 316, 744, 1255, 1361
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 6 cut(s) 90, 108, 272, 364, 1054, 1092
HpyF10VI GCNNNNNNNGC 1 cut(s) 994
HpyF3I CTNAG 3 cut(s) 378, 435, 1098
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 1 cut(s) 1158
HspAI GCGC 3 cut(s) 473, 1086, 1279
Kpn2I TCCGGA 1 cut(s) 796
Kzo9I GATC 6 cut(s) 322, 337, 754, 811, 1317, 1365
LmnI GCTCC 1 cut(s) 1336
Lsp1109I GCAGC 2 cut(s) 88, 530
LweI GCATC 2 cut(s) 373, 1101
MaeI CTAG 6 cut(s) 30, 491, 726, 777, 1025, 1344
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 4 cut(s) 663, 838, 968, 1060
MalI GATC 6 cut(s) 324, 339, 756, 813, 1319, 1367
MboI GATC 6 cut(s) 322, 337, 754, 811, 1317, 1365
MflI RGATCY 2 cut(s) 337, 1365
MhlI GDGCHC 3 cut(s) 411, 612, 1056
MluCI AATT 6 cut(s) 235, 265, 529, 560, 1234, 1370
MlyI GAGTC 3 cut(s) 628, 774, 1054
MmeI TCCRAC 1 cut(s) 284
Mph1103I ATGCAT 1 cut(s) 366
MroI TCCGGA 1 cut(s) 796
MseI TTAA 4 cut(s) 230, 477, 852, 870
MspCI CTTAAG 1 cut(s) 229
MspI CCGG 3 cut(s) 596, 797, 932
MspR9I CCNGG 2 cut(s) 453, 596
MvaI CCWGG 1 cut(s) 453
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 994
NciI CCSGG 1 cut(s) 596
NdeI CATATG 2 cut(s) 178, 360
NdeII GATC 6 cut(s) 322, 337, 754, 811, 1317, 1365
NlaIII CATG 1 cut(s) 1158
NlaIV GGNNCC 1 cut(s) 996
NmuCI GTSAC 1 cut(s) 968
NsiI ATGCAT 1 cut(s) 366
NspI RCATGY 1 cut(s) 1158
PaeR7I CTCGAG 1 cut(s) 143
PciI ACATGT 1 cut(s) 1154
PfeI GAWTC 4 cut(s) 61, 136, 255, 893
PflMI CCANNNNNTGG 1 cut(s) 129
PkrI GCNGC 3 cut(s) 103, 329, 545
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 3 cut(s) 627, 774, 1053
PpsI GAGTC 3 cut(s) 627, 774, 1053
PscI ACATGT 1 cut(s) 1154
Psp124BI GAGCTC 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 451
PspFI CCCAGC 1 cut(s) 701
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 996
PspXI VCTCGAGB 1 cut(s) 143
PsuI RGATCY 2 cut(s) 337, 1365
PvuI CGATCG 1 cut(s) 325
RsaI GTAC 3 cut(s) 713, 1195, 1310
RsaNI GTAC 3 cut(s) 712, 1194, 1309
SacI GAGCTC 1 cut(s) 411
SaqAI TTAA 4 cut(s) 230, 477, 852, 870
SatI GCNGC 3 cut(s) 102, 328, 544
Sau3AI GATC 6 cut(s) 322, 337, 754, 811, 1317, 1365
SchI GAGTC 3 cut(s) 628, 774, 1054
ScrFI CCNGG 2 cut(s) 453, 596
SduI GDGCHC 3 cut(s) 411, 612, 1056
SfaNI GCATC 2 cut(s) 373, 1101
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 5 cut(s) 143, 229, 404, 554, 899
SmoI CTYRAG 5 cut(s) 143, 229, 404, 554, 899
Sse9I AATT 6 cut(s) 235, 265, 529, 560, 1234, 1370
SsiI CCGC 5 cut(s) 327, 354, 420, 749, 1074
SspI AATATT 1 cut(s) 1177
SspMI CTAG 6 cut(s) 30, 491, 726, 777, 1025, 1344
SstI GAGCTC 1 cut(s) 411
StyD4I CCNGG 2 cut(s) 451, 594
TaaI ACNGT 6 cut(s) 247, 302, 316, 744, 1255, 1361
TaiI ACGT 1 cut(s) 670
TaqI TCGA 4 cut(s) 144, 321, 617, 1189
TasI AATT 6 cut(s) 235, 265, 529, 560, 1234, 1370
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 4 cut(s) 61, 136, 255, 893
Tru1I TTAA 4 cut(s) 230, 477, 852, 870
Tru9I TTAA 4 cut(s) 230, 477, 852, 870
TscAI CASTG 3 cut(s) 319, 382, 504
TseFI GTSAC 1 cut(s) 968
TseI GCWGC 2 cut(s) 101, 543
Tsp45I GTSAC 1 cut(s) 968
TspDTI ATGAA 4 cut(s) 523, 869, 929, 1341
TspGWI ACGGA 2 cut(s) 857, 1142
TspRI CASTG 3 cut(s) 319, 382, 504
Van91I CCANNNNNTGG 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 229
VneI GTGCAC 1 cut(s) 1052
XapI RAATTY 2 cut(s) 529, 1234
XbaI TCTAGA 1 cut(s) 29
XceI RCATGY 1 cut(s) 1158
XcmI CCANNNNNNNNNTGG 1 cut(s) 1330
XhoI CTCGAG 1 cut(s) 143
XmiI GTMKAC 3 cut(s) 5, 49, 153
XspI CTAG 6 cut(s) 30, 491, 726, 777, 1025, 1344
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.