AT1G64540

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005679
Physical Location & Seq
Forward (+)
23966684 .. 23968512
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64540.2

Sequence Viewer

Length: 1335 bp
ATGAATCCTAGAGAGTTCATCAGCAATCTGCCAGATGAGATTCTTGGCAAAATCCTGTCTTTACTTCCGACAAAACTTGGTGTTTCCACATCTGTTCTGTCCAAGAGGTGGAGGAATCTGATCCTTCTCGTAGACAACTTCGATTTGGAAGACTCATCAACTAGTGGCTTCTCTGCTTTCTTGGAGCAAACTGTTGCTCGCTTAAACACTTGTCCCATCAAGAGACTCTCTCTCAATGGCCGCCACTATCGATTCTCTTCTGCTGACAGTTGGATTAGCACTGCTTTCGAACGCGGCTGCTTGGAACTACACTTGCAATCCCAATATCTTGATACAGGAATCTTGTCTAGTAACACATTGGTTAAACTCACACTATCCGATCAAATTTATCTTCAAGGGCTTGTTCCCCATGATGGCACTGTGTTTTTCCCAGCGCTCAAGACTCTTTCTCTCGGTGCAGTTGTGGCTGATCGAGATGTATATGAGTCGCTCATCTCTGGTTGCCCTGTGCTCGATGAGTTATCCATACGTGATGGTTGTGATGACCCACCAACTTGGAAGAAGTCAGTGGTTAATAAATCCGTCAAACGGCTCACGGTTTCTTTCCATCATCCTATGTCCGCATGGGCTTATGAAGACAATGTTTGGTTCAAGACACAGAGTCTTGTGTTTCTTGACTATTCTGCTTTTGTCTCCCAAGGCTATACTATTGTTGATCGTATGGATTCTCTCGTTGAAGCTAGACTAGATCTTCGATTGTGGGTGTCAACTGATTCTTATGATAGTGATTATGAAGACAAAGATTTTGATGTCTATCGTCCATATGATGTTTTTGGTGATGTTACAAGCCTGGTTTCAGGGATACGCAAAGTTAAGACCCTTCACCTGTCTCCTGATTCTCTTGAGGCGTTTTTCTTCTGCTGCAATCACATGCCGGTCTTCAACAACCTCCGTAATCTATCTCTTGAGAGCGACGAAGAAAAAGGATGGCAAGCATTGCCTCTTCTGCTCAATAATTCTCTAAATCTTCATACTCTATCTATCAAAGGTCTTGTGCACAGAGTTACTAGTAGATGTGGAGACGCATGCGCCTGCATTAGCGAGAGGAAGACAGGAATGTGTTGTTTATCGGCATGTCGAATCAAGGTGCTAGAGATTACAGGGTATGGAGGAAGTTTTATAGAGCTGAAACAAATGAGGCATTTTTTGGGAAAACTGCAATGTCTTGAAACTGTGAGAATTGGTGTTGAAAGGGACGGCAACAACGAGCACCTGCGAGCCAATCTAAGCTCTCTTCATAGAGCTTCATCAGAGTGCAACATCCAGTTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

444

Amino Acids

50.02

Weight (kDa)

5.97

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 45 8.9e-07 F-box domain
LRR_At5g56370 PF24758 89 - 199 2.6e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1281
Acc36I ACCTGC 1 cut(s) 1281
AccB7I CCANNNNNTGG 1 cut(s) 108
AccI GTMKAC 1 cut(s) 132
AccII CGCG 1 cut(s) 294
AciI CCGC 3 cut(s) 241, 294, 621
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 384
AfeI AGCGCT 1 cut(s) 435
AfiI CCNNNNNNNGG 3 cut(s) 108, 413, 588
AgsI TTSAA 6 cut(s) 395, 652, 737, 943, 1229, 1250
AhdI GACNNNNNGTC 1 cut(s) 660
AhlI ACTAGT 2 cut(s) 161, 1067
AjnI CCWGG 1 cut(s) 849
AluBI AGCT 4 cut(s) 740, 1186, 1290, 1304
AluI AGCT 4 cut(s) 740, 1186, 1290, 1304
Alw21I GWGCWC 3 cut(s) 513, 1059, 1272
Alw26I GTCTC 4 cut(s) 217, 697, 894, 1074
Alw44I GTGCAC 1 cut(s) 1055
AlwI GGATC 1 cut(s) 115
Aor51HI AGCGCT 1 cut(s) 435
AoxI GGCC 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 1055
ApeKI GCWGC 2 cut(s) 297, 921
ApoI RAATTY 1 cut(s) 384
ArsI GACNNNNNNTTYG 4 cut(s) 735, 767, 788, 820
AspLEI GCGC 2 cut(s) 436, 1091
AsuHPI GGTGA 2 cut(s) 848, 875
AsuII TTCGAA 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 1059
BbsI GAAGAC 5 cut(s) 156, 642, 801, 931, 1115
Bbv12I GWGCWC 3 cut(s) 513, 1059, 1272
BbvI GCAGC 2 cut(s) 284, 908
BccI CCATC 5 cut(s) 224, 407, 527, 615, 981
BceAI ACGGC 2 cut(s) 605, 1273
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 1 cut(s) 851
BciVI GTATCC 1 cut(s) 855
BcoDI GTCTC 4 cut(s) 217, 697, 894, 1074
BcuI ACTAGT 2 cut(s) 161, 1067
BfaI CTAG 7 cut(s) 9, 162, 348, 741, 746, 1068, 1151
BfoI RGCGCY 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 1281
BfuI GTATCC 1 cut(s) 855
BglII AGATCT 1 cut(s) 748
BisI GCNGC 4 cut(s) 241, 295, 298, 922
BlsI GCNGC 4 cut(s) 242, 296, 299, 923
Bme1390I CCNGG 1 cut(s) 851
BmeRI GACNNNNNGTC 1 cut(s) 660
BmrFI CCNGG 1 cut(s) 851
BpiI GAAGAC 5 cut(s) 156, 642, 801, 931, 1115
BplI GAGNNNNNCTC 2 cut(s) 214, 246
Bpu14I TTCGAA 1 cut(s) 288
BpuEI CTTGAG 3 cut(s) 422, 923, 986
Bsa29I ATCGAT 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 813
BsaJI CCNNGG 1 cut(s) 697
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 413, 588
Bse118I RCCGGY 1 cut(s) 934
Bse1I ACTGG 1 cut(s) 1324
Bse3DI GCAATG 2 cut(s) 995, 1226
Bse8I GATNNNNATC 1 cut(s) 813
BseBI CCWGG 1 cut(s) 851
BseCI ATCGAT 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 697
BseGI GGATG 3 cut(s) 610, 992, 1320
BseJI GATNNNNATC 1 cut(s) 813
BseLI CCNNNNNNNGG 3 cut(s) 108, 413, 588
BseMI GCAATG 2 cut(s) 995, 1226
BseNI ACTGG 1 cut(s) 1324
BseSI GKGCMC 1 cut(s) 1059
BseXI GCAGC 2 cut(s) 284, 908
BseYI CCCAGC 1 cut(s) 430
BsgI GTGCAG 1 cut(s) 477
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 240
BshVI ATCGAT 1 cut(s) 250
BsiHKAI GWGCWC 3 cut(s) 513, 1059, 1272
BsiSI CCGG 1 cut(s) 935
BslFI GGGAC 2 cut(s) 198, 1268
BslI CCNNNNNNNGG 3 cut(s) 108, 413, 588
BsmAI GTCTC 4 cut(s) 217, 697, 894, 1074
BsmBI CGTCTC 1 cut(s) 1074
BsmFI GGGAC 2 cut(s) 198, 1268
BsnI GGCC 1 cut(s) 240
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 3 cut(s) 513, 1059, 1272
Bsp143I GATC 5 cut(s) 120, 379, 469, 715, 748
BspACI CCGC 3 cut(s) 241, 294, 621
BspANI GGCC 1 cut(s) 240
BspDI ATCGAT 1 cut(s) 250
BspFNI CGCG 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 1281
BspPI GGATC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 288
BsrDI GCAATG 2 cut(s) 995, 1226
BsrFI RCCGGY 1 cut(s) 934
BsrI ACTGG 1 cut(s) 1324
BssAI RCCGGY 1 cut(s) 934
BssECI CCNNGG 1 cut(s) 697
BssMI GATC 5 cut(s) 120, 379, 469, 715, 748
BssT1I CCWWGG 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 5 cut(s) 193, 269, 421, 598, 1234
Bst6I CTCTTC 3 cut(s) 262, 1008, 1299
BstAPI GCANNNNNTGC 1 cut(s) 997
BstBAI YACGTR 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 5 cut(s) 199, 993, 1087, 1093, 1278
BstDEI CTNAG 1 cut(s) 1286
BstF5I GGATG 3 cut(s) 610, 992, 1320
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 2 cut(s) 436, 1091
BstKTI GATC 5 cut(s) 123, 382, 472, 718, 751
BstMAI GTCTC 4 cut(s) 217, 697, 894, 1074
BstMBI GATC 5 cut(s) 120, 379, 469, 715, 748
BstMWI GCNNNNNNNGC 3 cut(s) 464, 997, 1006
BstNI CCWGG 1 cut(s) 851
BstNSI RCATGY 3 cut(s) 934, 1089, 1137
BstSCI CCNGG 1 cut(s) 849
BstSLI GKGCMC 1 cut(s) 1059
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 284, 908
BstV2I GAAGAC 5 cut(s) 156, 642, 801, 931, 1115
BstX2I RGATCY 1 cut(s) 748
BstXI CCANNNNNNTGG 1 cut(s) 555
BstYI RGATCY 1 cut(s) 748
Bsu15I ATCGAT 1 cut(s) 250
BsuI GTATCC 1 cut(s) 855
BsuRI GGCC 1 cut(s) 240
BsuTUI ATCGAT 1 cut(s) 250
BtsCI GGATG 3 cut(s) 610, 992, 1320
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 3 cut(s) 279, 417, 573
BveI ACCTGC 1 cut(s) 1281
Cac8I GCNNGC 5 cut(s) 199, 993, 1087, 1093, 1278
CfoI GCGC 2 cut(s) 436, 1091
Cfr10I RCCGGY 1 cut(s) 934
ClaI ATCGAT 1 cut(s) 250
CseI GACGC 1 cut(s) 1091
CviAII CATG 5 cut(s) 410, 624, 931, 1086, 1134
DdeI CTNAG 1 cut(s) 1286
DpnI GATC 5 cut(s) 122, 381, 471, 717, 750
DpnII GATC 5 cut(s) 120, 379, 469, 715, 748
DriI GACNNNNNGTC 1 cut(s) 660
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 3 cut(s) 262, 1008, 1299
Eam1105I GACNNNNNGTC 1 cut(s) 660
EarI CTCTTC 3 cut(s) 262, 1008, 1299
Eco130I CCWWGG 1 cut(s) 697
Eco47III AGCGCT 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 849
EcoT14I CCWWGG 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 697
Esp3I CGTCTC 1 cut(s) 1074
FaeI CATG 5 cut(s) 413, 627, 934, 1089, 1137
FaqI GGGAC 2 cut(s) 198, 1268
FatI CATG 5 cut(s) 409, 623, 930, 1085, 1133
FauNDI CATATG 1 cut(s) 823
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 241, 295, 298, 922
FokI GGATG 3 cut(s) 597, 999, 1307
Fsp4HI GCNGC 4 cut(s) 241, 295, 298, 922
FspBI CTAG 7 cut(s) 9, 162, 348, 741, 746, 1068, 1151
GlaI GCGC 2 cut(s) 435, 1090
GluI GCNGC 4 cut(s) 241, 295, 298, 922
GsaI CCCAGC 1 cut(s) 434
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 935
HgaI GACGC 1 cut(s) 1091
HhaI GCGC 2 cut(s) 436, 1091
Hin1II CATG 5 cut(s) 413, 627, 934, 1089, 1137
Hin6I GCGC 2 cut(s) 434, 1089
HinP1I GCGC 2 cut(s) 434, 1089
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HpaII CCGG 1 cut(s) 935
HphI GGTGA 2 cut(s) 848, 875
Hpy166II GTNNAC 3 cut(s) 133, 768, 1057
Hpy188I TCNGA 4 cut(s) 69, 120, 379, 1312
Hpy8I GTNNAC 3 cut(s) 133, 768, 1057
Hpy99I CGWCG 1 cut(s) 977
HpyAV CCTTC 2 cut(s) 134, 890
HpyCH4III ACNGT 5 cut(s) 193, 269, 421, 598, 1234
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 7 cut(s) 316, 458, 924, 1057, 1095, 1219, 1317
HpyF10VI GCNNNNNNNGC 3 cut(s) 464, 997, 1006
HpyF3I CTNAG 1 cut(s) 1286
HpySE526I ACGT 1 cut(s) 529
Hsp92II CATG 5 cut(s) 413, 627, 934, 1089, 1137
HspAI GCGC 2 cut(s) 434, 1089
Kzo9I GATC 5 cut(s) 120, 379, 469, 715, 748
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 2 cut(s) 284, 908
MaeI CTAG 7 cut(s) 9, 162, 348, 741, 746, 1068, 1151
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 3 cut(s) 350, 841, 1063
MalI GATC 5 cut(s) 122, 381, 471, 717, 750
MboI GATC 5 cut(s) 120, 379, 469, 715, 748
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 3 cut(s) 513, 1059, 1272
MluCI AATT 3 cut(s) 384, 1015, 1239
MlyI GAGTC 5 cut(s) 146, 219, 436, 494, 670
MmeI TCCRAC 2 cut(s) 92, 251
MnlI CCTC 8 cut(s) 99, 105, 898, 959, 1011, 1098, 1163, 1191
MseI TTAA 4 cut(s) 203, 363, 573, 873
MslI CAYNNNNRTG 1 cut(s) 1312
MspI CCGG 1 cut(s) 935
MspR9I CCNGG 1 cut(s) 851
MvaI CCWGG 1 cut(s) 851
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 464, 997, 1006
NdeI CATATG 1 cut(s) 823
NdeII GATC 5 cut(s) 120, 379, 469, 715, 748
NlaIII CATG 5 cut(s) 413, 627, 934, 1089, 1137
NspI RCATGY 3 cut(s) 934, 1089, 1137
NspV TTCGAA 1 cut(s) 288
PaeI GCATGC 1 cut(s) 1089
PaqCI CACCTGC 1 cut(s) 1281
PcsI WCGNNNNNNNCGW 1 cut(s) 1263
PfeI GAWTC 9 cut(s) 4, 40, 115, 252, 339, 725, 773, 896, 1140
PflMI CCANNNNNTGG 1 cut(s) 108
PkrI GCNGC 4 cut(s) 242, 296, 299, 923
PleI GAGTC 5 cut(s) 146, 219, 436, 493, 669
PpsI GAGTC 5 cut(s) 146, 219, 436, 493, 669
Ppu21I YACGTR 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 849
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 849
PsuI RGATCY 1 cut(s) 748
RseI CAYNNNNRTG 1 cut(s) 1312
SaqAI TTAA 4 cut(s) 203, 363, 573, 873
SatI GCNGC 4 cut(s) 241, 295, 298, 922
Sau3AI GATC 5 cut(s) 120, 379, 469, 715, 748
SchI GAGTC 5 cut(s) 146, 219, 436, 494, 670
ScrFI CCNGG 1 cut(s) 851
SduI GDGCHC 3 cut(s) 513, 1059, 1272
SfuI TTCGAA 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 1312
SmlI CTYRAG 3 cut(s) 437, 902, 965
SmoI CTYRAG 3 cut(s) 437, 902, 965
SpeI ACTAGT 2 cut(s) 161, 1067
SphI GCATGC 1 cut(s) 1089
Sse9I AATT 3 cut(s) 384, 1015, 1239
SsiI CCGC 3 cut(s) 241, 294, 621
SspMI CTAG 7 cut(s) 9, 162, 348, 741, 746, 1068, 1151
StyD4I CCNGG 1 cut(s) 849
StyI CCWWGG 1 cut(s) 697
TaaI ACNGT 5 cut(s) 193, 269, 421, 598, 1234
TaiI ACGT 1 cut(s) 532
TaqI TCGA 7 cut(s) 141, 250, 288, 472, 513, 754, 1138
TasI AATT 3 cut(s) 384, 1015, 1239
TauI GCSGC 2 cut(s) 243, 297
TfiI GAWTC 9 cut(s) 4, 40, 115, 252, 339, 725, 773, 896, 1140
Tru1I TTAA 4 cut(s) 203, 363, 573, 873
Tru9I TTAA 4 cut(s) 203, 363, 573, 873
TscAI CASTG 3 cut(s) 286, 424, 573
TseI GCWGC 2 cut(s) 297, 921
TspDTI ATGAA 8 cut(s) 7, 17, 648, 807, 1019, 1286, 1296, 1318
TspGWI ACGGA 2 cut(s) 571, 941
TspRI CASTG 3 cut(s) 286, 424, 573
Van91I CCANNNNNTGG 1 cut(s) 108
VneI GTGCAC 1 cut(s) 1055
XapI RAATTY 1 cut(s) 384
XceI RCATGY 3 cut(s) 934, 1089, 1137
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 7 cut(s) 9, 162, 348, 741, 746, 1068, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.