AT1G48170

Proteasome assembly chaperone 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014519
Physical Location & Seq
Forward (+)
17788763 .. 17790246
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48170.1

Sequence Viewer

Length: 462 bp
ATGGAGACTGAATACGACCAAGTTCTTCGATCCGTTGCTCAGGTGAACATCGCCGACCAAATCGGAGAATCCGACGACGTAGAAAGAGACGGAAACGGCGTAAAAGTTTCGTGCTTCACTGAAGTTTTCGATGATGTTACTATCCAGTTCCAGATCATCCGTCTCGCGAAACAGATTTACGTATGGGTCGGTTGCAATTCCGCCAAATTTGGGAGTTTGTACGCAGCCGCTTCAACACGACCGAGCAATACAGTGAGTGTTACATCGGTACTTGGTGGAACATCTGATAACACTGGATCTGGCATTGCGCGTAGATTAGTGTTGAAGACTGGTCTCAATATAATACTGGCTTGCAACATCCCTAAAAACAATCCCTTGCTTGAGGCAAAAGCTGAGAAAGTGTTGATTAGAAAGCTGATTGATCTTGGTTACACAATGTCAAAACCTGTAAGAGCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC4

Protein Analysis

153

Amino Acids

16.6

Weight (kDa)

7.65

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC4 PF16093 47 - 120 2.2e-19 Proteasome assembly chaperone 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48170
fragaria_vesca FvH4_4g21260
malus_domestica MD13G1143600.v1.1 MD16G1146600.v1.1
prunus_persica Prupe.1G108100_v2.0.a1
pyrus_communis pycom13g12450
rosa_chinensis RchiOBHm_Chr4g0426881
rosa_laevigata RLG00000007271
rosa_roxburghii Rroxscaffold_5G00368850 Rroxscaffold_5G00379210
rosa_samantha Rh2DG030000 Rh4AG270600 Rh4BG276900 Rh4CG291600 Rh4DG274100
rosa_wichuraiana Rw4G023480 Rw5G000420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 167, 310
AciI CCGC 2 cut(s) 201, 228
AclWI GGATC 2 cut(s) 24, 304
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 2 cut(s) 221, 270
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 2 cut(s) 234, 325
AluBI AGCT 2 cut(s) 392, 415
AluI AGCT 2 cut(s) 392, 415
Alw26I GTCTC 3 cut(s) 81, 167, 338
AlwI GGATC 2 cut(s) 24, 304
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 206
AspLEI GCGC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 112
BcoDI GTCTC 3 cut(s) 81, 167, 338
BisI GCNGC 2 cut(s) 225, 228
BlsI GCNGC 2 cut(s) 226, 229
BpiI GAAGAC 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 4 cut(s) 145, 298, 334, 351
Bse3DI GCAATG 1 cut(s) 303
BseGI GGATG 2 cut(s) 156, 357
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 2 cut(s) 53, 384
BseNI ACTGG 4 cut(s) 145, 298, 334, 351
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 2 cut(s) 167, 310
Bsh1285I CGRYCG 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 3 cut(s) 81, 167, 338
BsmBI CGTCTC 2 cut(s) 81, 167
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 4 cut(s) 29, 153, 296, 421
Bsp68I TCGCGA 1 cut(s) 167
BspACI CCGC 2 cut(s) 201, 228
BspCNI CTCAG 2 cut(s) 52, 385
BspFNI CGCG 2 cut(s) 167, 310
BspPI GGATC 2 cut(s) 24, 304
BspTNI GGTCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 4 cut(s) 145, 298, 334, 351
BssMI GATC 4 cut(s) 29, 153, 296, 421
Bst4CI ACNGT 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 2 cut(s) 39, 393
BstF5I GGATG 2 cut(s) 156, 357
BstFNI CGCG 2 cut(s) 167, 310
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 4 cut(s) 32, 156, 299, 424
BstMAI GTCTC 3 cut(s) 81, 167, 338
BstMBI GATC 4 cut(s) 29, 153, 296, 421
BstMCI CGRYCG 1 cut(s) 242
BstSNI TACGTA 1 cut(s) 181
BstUI CGCG 2 cut(s) 167, 310
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BtgZI GCGATG 1 cut(s) 34
BtsCI GGATG 2 cut(s) 156, 357
BtsIMutI CAGTG 3 cut(s) 117, 258, 291
BtuMI TCGCGA 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 1 cut(s) 310
Csp6I GTAC 2 cut(s) 220, 269
CviJI RGCY 4 cut(s) 227, 350, 392, 415
CviKI_1 RGCY 4 cut(s) 227, 350, 392, 415
CviQI GTAC 2 cut(s) 220, 269
DdeI CTNAG 2 cut(s) 39, 393
DpnI GATC 4 cut(s) 31, 155, 298, 423
DpnII GATC 4 cut(s) 29, 153, 296, 421
EciI GGCGGA 1 cut(s) 190
Eco105I TACGTA 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 141
Esp3I CGTCTC 2 cut(s) 81, 167
FaiI YATR 3 cut(s) 184, 341, 460
Fnu4HI GCNGC 2 cut(s) 225, 228
FokI GGATG 2 cut(s) 143, 344
Fsp4HI GCNGC 2 cut(s) 225, 228
GlaI GCGC 1 cut(s) 309
GluI GCNGC 2 cut(s) 225, 228
HhaI GCGC 1 cut(s) 310
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 1 cut(s) 68
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 3 cut(s) 65, 73, 286
Hpy188III TCNNGA 2 cut(s) 151, 166
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 2 cut(s) 77, 80
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 2 cut(s) 78, 180
HpyCH4V TGCA 2 cut(s) 195, 354
HpyF3I CTNAG 2 cut(s) 39, 393
HpySE526I ACGT 2 cut(s) 78, 180
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 4 cut(s) 29, 153, 296, 421
LpnPI CCDG 7 cut(s) 26, 158, 164, 279, 285, 315, 332
Lsp1109I GCAGC 1 cut(s) 236
MaeII ACGT 2 cut(s) 78, 180
MaeIII GTNAC 3 cut(s) 136, 259, 428
MalI GATC 4 cut(s) 31, 155, 298, 423
MboI GATC 4 cut(s) 29, 153, 296, 421
MboII GAAGA 2 cut(s) 17, 337
MflI RGATCY 1 cut(s) 296
MluCI AATT 2 cut(s) 196, 206
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 1 cut(s) 376
MvnI CGCG 2 cut(s) 167, 310
NdeII GATC 4 cut(s) 29, 153, 296, 421
NruI TCGCGA 1 cut(s) 167
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 96
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 226, 229
Ppu21I YACGTR 1 cut(s) 181
PsuI RGATCY 1 cut(s) 296
RruI TCGCGA 1 cut(s) 167
RsaI GTAC 2 cut(s) 221, 270
RsaNI GTAC 2 cut(s) 220, 269
SatI GCNGC 2 cut(s) 225, 228
Sau3AI GATC 4 cut(s) 29, 153, 296, 421
SetI ASST 6 cut(s) 45, 81, 183, 394, 417, 448
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SnaBI TACGTA 1 cut(s) 181
Sse9I AATT 2 cut(s) 196, 206
SsiI CCGC 2 cut(s) 201, 228
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 2 cut(s) 81, 183
TaqI TCGA 2 cut(s) 28, 129
TaqII GACCGA 1 cut(s) 256
TasI AATT 2 cut(s) 196, 206
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 68
TscAI CASTG 3 cut(s) 124, 258, 298
TseI GCWGC 1 cut(s) 224
TspGWI ACGGA 3 cut(s) 22, 105, 149
TspRI CASTG 3 cut(s) 124, 258, 298
XapI RAATTY 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.