pycom13g12450

Proteasome assembly chaperone 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014519
Physical Location & Seq
Reverse (-)
8689923 .. 8691311
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12450.3

Sequence Viewer

Length: 453 bp
ATGGCGCGGAGTGATTTAGACCTTGGCGCTCTAAACGACGCGTTTAGCTCCGCTCAAATTTCCAAACACGAAGAACCGACTGGTCCGAGCGACACCAACGACGACGGCGATGCCGGTGGTTTGCAAGTCACGTGCTTCAGTGAGGTCGTCAACGAAACCGCCTTCCACCTCCAAATCATCCGCCTTCCCAAGCAGATCTATGCATGGATTGGTTGCAACTCTGCAAAAATTGGGCATTTGTATGCAGCAGCACCTATGAGACCTTTTTTTCCGCCTCCTCCATCTTCTGACATGCTGTTATTTTCAGTGTTAAAGACTGGACTTAACATAATCCTGGCTTGCAACATTCCTAAGAATAGTCCCATGCTTGAGGCAGATGCTGAAAAATTGTTGGTTCAGAAGCTAATCAATCTTGGGTACACAAGGCCAAGGTCCGGAGTATTGTCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC4

Protein Analysis

151

Amino Acids

16.18

Weight (kDa)

5.51

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48170
fragaria_vesca FvH4_4g21260
malus_domestica MD13G1143600.v1.1 MD16G1146600.v1.1
prunus_persica Prupe.1G108100_v2.0.a1
pyrus_communis pycom13g12450
rosa_chinensis RchiOBHm_Chr4g0426881
rosa_laevigata RLG00000007271
rosa_roxburghii Rroxscaffold_5G00368850 Rroxscaffold_5G00379210
rosa_samantha Rh2DG030000 Rh4AG270600 Rh4BG276900 Rh4CG291600 Rh4DG274100
rosa_wichuraiana Rw4G023480 Rw5G000420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 53
AccII CGCG 2 cut(s) 7, 41
AccIII TCCGGA 1 cut(s) 434
AciI CCGC 5 cut(s) 7, 51, 159, 181, 272
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 121
AcvI CACGTG 1 cut(s) 132
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 434
AflIII ACRYGT 1 cut(s) 39
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 2 cut(s) 48, 403
AluI AGCT 2 cut(s) 48, 403
Alw26I GTCTC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 434
AoxI GGCC 1 cut(s) 425
ApeKI GCWGC 2 cut(s) 245, 248
ApoI RAATTY 1 cut(s) 57
AspLEI GCGC 2 cut(s) 7, 29
AspS9I GGNCC 2 cut(s) 83, 432
AvaII GGWCC 2 cut(s) 83, 432
BbrPI CACGTG 1 cut(s) 132
BbvI GCAGC 2 cut(s) 257, 260
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 30
BglII AGATCT 1 cut(s) 195
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 2 cut(s) 83, 432
BmgT120I GGNCC 2 cut(s) 83, 432
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 2 cut(s) 100, 367
BpuEI CTTGAG 1 cut(s) 389
BsaAI YACGTR 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 22, 428
BsaWI WCCGGW 1 cut(s) 434
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 85, 322
BseAI TCCGGA 1 cut(s) 434
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 22, 428
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 85, 322
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 257, 260
Bsh1236I CGCG 2 cut(s) 7, 41
BshFI GGCC 1 cut(s) 427
BsiSI CCGG 2 cut(s) 114, 435
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 434
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 1 cut(s) 427
Bso31I GGTCTC 1 cut(s) 253
Bsp13I TCCGGA 1 cut(s) 434
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 5 cut(s) 7, 51, 159, 181, 272
BspANI GGCC 1 cut(s) 427
BspEI TCCGGA 1 cut(s) 434
BspFNI CGCG 2 cut(s) 7, 41
BspTNI GGTCTC 1 cut(s) 253
BsrBI CCGCTC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 2 cut(s) 85, 322
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 22, 428
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 22, 428
Bst2UI CCWGG 1 cut(s) 335
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 2 cut(s) 7, 41
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 2 cut(s) 7, 29
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 1 cut(s) 195
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 333
BstUI CGCG 2 cut(s) 7, 41
BstV1I GCAGC 2 cut(s) 257, 260
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 1 cut(s) 427
BtgZI GCGATG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 145, 312
Cac8I GCNNGC 1 cut(s) 340
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 2 cut(s) 7, 29
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 83, 432
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 418
CviAII CATG 3 cut(s) 204, 292, 364
CviJI RGCY 4 cut(s) 48, 338, 403, 427
CviKI_1 RGCY 4 cut(s) 48, 338, 403, 427
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 1 cut(s) 351
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EciI GGCGGA 2 cut(s) 170, 261
Eco130I CCWWGG 2 cut(s) 22, 428
Eco31I GGTCTC 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 83, 432
Eco57I CTGAAG 1 cut(s) 121
Eco72I CACGTG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 22, 428
EcoT22I ATGCAT 1 cut(s) 205
ErhI CCWWGG 2 cut(s) 22, 428
FaeI CATG 3 cut(s) 207, 295, 367
FaiI YATR 8 cut(s) 201, 205, 243, 257, 293, 329, 365, 451
FaqI GGGAC 1 cut(s) 345
FatI CATG 3 cut(s) 203, 291, 363
Fnu4HI GCNGC 2 cut(s) 246, 249
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 246, 249
GlaI GCGC 2 cut(s) 6, 28
GluI GCNGC 2 cut(s) 246, 249
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 427
HapII CCGG 2 cut(s) 114, 435
HgaI GACGC 1 cut(s) 47
HhaI GCGC 2 cut(s) 7, 29
Hin1II CATG 3 cut(s) 207, 295, 367
Hin6I GCGC 2 cut(s) 5, 27
HinP1I GCGC 2 cut(s) 5, 27
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HpaII CCGG 2 cut(s) 114, 435
Hpy166II GTNNAC 2 cut(s) 151, 420
Hpy188I TCNGA 3 cut(s) 87, 289, 399
Hpy188III TCNNGA 1 cut(s) 435
Hpy8I GTNNAC 2 cut(s) 151, 420
Hpy99I CGWCG 3 cut(s) 41, 104, 107
HpyAV CCTTC 2 cut(s) 172, 194
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 6 cut(s) 124, 203, 216, 224, 245, 342
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 3 cut(s) 207, 295, 367
HspAI GCGC 2 cut(s) 5, 27
Kpn2I TCCGGA 1 cut(s) 434
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 6 cut(s) 66, 127, 303, 320, 347, 448
Lsp1109I GCAGC 2 cut(s) 257, 260
LweI GCATC 2 cut(s) 100, 367
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 197
MbiI CCGCTC 1 cut(s) 53
MboI GATC 1 cut(s) 195
MboII GAAGA 2 cut(s) 83, 276
MflI RGATCY 1 cut(s) 195
MluCI AATT 3 cut(s) 57, 228, 386
MluI ACGCGT 1 cut(s) 39
MnlI CCTC 5 cut(s) 136, 179, 285, 288, 364
Mph1103I ATGCAT 1 cut(s) 205
MroI TCCGGA 1 cut(s) 434
MseI TTAA 2 cut(s) 311, 324
MslI CAYNNNNRTG 1 cut(s) 240
MspI CCGG 2 cut(s) 114, 435
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
MvnI CGCG 2 cut(s) 7, 41
NdeII GATC 1 cut(s) 195
NlaIII CATG 3 cut(s) 207, 295, 367
NmuCI GTSAC 1 cut(s) 127
NsiI ATGCAT 1 cut(s) 205
NspI RCATGY 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PkrI GCNGC 2 cut(s) 247, 250
PmaCI CACGTG 1 cut(s) 132
PmlI CACGTG 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 333
PspCI CACGTG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 333
PspPI GGNCC 2 cut(s) 83, 432
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 2 cut(s) 311, 324
SatI GCNGC 2 cut(s) 246, 249
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 2 cut(s) 83, 432
ScrFI CCNGG 1 cut(s) 335
SetI ASST 9 cut(s) 24, 50, 134, 147, 171, 256, 265, 405, 434
SfaNI GCATC 2 cut(s) 100, 367
SinI GGWCC 2 cut(s) 83, 432
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 3 cut(s) 57, 228, 386
SsiI CCGC 5 cut(s) 7, 51, 159, 181, 272
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 2 cut(s) 22, 428
TaiI ACGT 1 cut(s) 134
TasI AATT 3 cut(s) 57, 228, 386
Tru1I TTAA 2 cut(s) 311, 324
Tru9I TTAA 2 cut(s) 311, 324
TscAI CASTG 2 cut(s) 145, 312
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 245, 248
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 2 cut(s) 145, 312
VpaK11BI GGWCC 2 cut(s) 83, 432
XapI RAATTY 1 cut(s) 57
XceI RCATGY 1 cut(s) 295
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.