Rh4BG276900

Proteasome assembly chaperone 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014519
Physical Location & Seq
Forward (+)
45053797 .. 45055500
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG276900.1

Sequence Viewer

Length: 357 bp
ATGGCTCACGGAGATTCGAGCCTGGGTGCTCTAAGCGAAGCTTTAAGCGCTTCTCAAATTTCCAAAGAGAAACAACCCACTGATGCCACCTACAGCAATGGAGAAGACGACGCTGGTGGCGTGCAGATCACGTGCTTCACTGAGCTTGTCCATGATTCTACTACCCTCCACTTCCAAATCATCCGCCTTCCAAAGCAGATATATGCATGGATTGGTTGCAGCTCTGGAAAATTGGGGCATTTGTATGCAGCAGCACCCACTCGACCAAGTACAGTGAGTGTGACATCCCTACTTGGTGGGAGTTCTGATAATACAGGGTCAGGTATTGCTCGGAGATTGGGTAAGTTATCGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC4

Protein Analysis

118

Amino Acids

12.28

Weight (kDa)

6.39

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAC4 PF16093 55 - 115 4.9e-15 Proteasome assembly chaperone 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0014519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48170
fragaria_vesca FvH4_4g21260
malus_domestica MD13G1143600.v1.1 MD16G1146600.v1.1
prunus_persica Prupe.1G108100_v2.0.a1
pyrus_communis pycom13g12450
rosa_chinensis RchiOBHm_Chr4g0426881
rosa_laevigata RLG00000007271
rosa_roxburghii Rroxscaffold_5G00368850 Rroxscaffold_5G00379210
rosa_samantha Rh2DG030000 Rh4AG270600 Rh4BG276900 Rh4CG291600 Rh4DG274100
rosa_wichuraiana Rw4G023480 Rw5G000420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 57
AcvI CACGTG 1 cut(s) 132
AfaI GTAC 1 cut(s) 271
AfeI AGCGCT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 3 cut(s) 41, 145, 222
AluI AGCT 3 cut(s) 41, 145, 222
Alw21I GWGCWC 1 cut(s) 31
Aor51HI AGCGCT 1 cut(s) 49
ApeKI GCWGC 3 cut(s) 219, 248, 251
ApoI RAATTY 1 cut(s) 57
AspLEI GCGC 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 3 cut(s) 231, 260, 263
BciT130I CCWGG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 3 cut(s) 220, 249, 252
BlsI GCNGC 3 cut(s) 221, 250, 253
Bme1390I CCNGG 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 111
Bsa29I ATCGAT 1 cut(s) 350
BsaAI YACGTR 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 180, 284
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 231, 260, 263
BsgI GTGCAG 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 126, 351
BspACI CCGC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 126, 351
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 274
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 32, 141
BstF5I GGATG 2 cut(s) 180, 284
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 2 cut(s) 129, 354
BstMBI GATC 2 cut(s) 126, 351
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 3 cut(s) 231, 260, 263
BstV2I GAAGAC 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 350
BsuTUI ATCGAT 1 cut(s) 350
BtsCI GGATG 2 cut(s) 180, 284
BtsIMutI CAGTG 3 cut(s) 78, 138, 279
Cac8I GCNNGC 1 cut(s) 122
CfoI GCGC 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 350
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 270
CviAII CATG 2 cut(s) 152, 207
CviJI RGCY 5 cut(s) 5, 21, 41, 145, 222
CviKI_1 RGCY 5 cut(s) 5, 21, 41, 145, 222
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 2 cut(s) 32, 141
DpnI GATC 2 cut(s) 128, 353
DpnII GATC 2 cut(s) 126, 351
EciI GGCGGA 1 cut(s) 173
Eco47III AGCGCT 1 cut(s) 49
Eco72I CACGTG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 208
FaeI CATG 2 cut(s) 155, 210
FaiI YATR 5 cut(s) 153, 202, 204, 208, 246
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 2 cut(s) 151, 206
Fnu4HI GCNGC 3 cut(s) 220, 249, 252
FokI GGATG 2 cut(s) 167, 271
Fsp4HI GCNGC 3 cut(s) 220, 249, 252
GlaI GCGC 1 cut(s) 49
GluI GCNGC 3 cut(s) 220, 249, 252
HaeII RGCGCY 1 cut(s) 51
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 50
Hin1II CATG 2 cut(s) 155, 210
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 2 cut(s) 14, 155
Hpy188I TCNGA 2 cut(s) 307, 333
Hpy188III TCNNGA 1 cut(s) 225
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 4 cut(s) 124, 206, 219, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 32, 141
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 2 cut(s) 155, 210
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 2 cut(s) 126, 351
LpnPI CCDG 6 cut(s) 8, 35, 99, 210, 300, 306
Lsp1109I GCAGC 3 cut(s) 231, 260, 263
LweI GCATC 1 cut(s) 73
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 128, 353
MboI GATC 2 cut(s) 126, 351
MboII GAAGA 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 57, 230
MnlI CCTC 1 cut(s) 176
Mph1103I ATGCAT 1 cut(s) 208
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 126, 351
NlaIII CATG 2 cut(s) 155, 210
NmuCI GTSAC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 2 cut(s) 14, 155
PkrI GCNGC 3 cut(s) 221, 250, 253
PmaCI CACGTG 1 cut(s) 132
PmlI CACGTG 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 21
PspCI CACGTG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 21
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 3 cut(s) 220, 249, 252
Sau3AI GATC 2 cut(s) 126, 351
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 31
SetI ASST 6 cut(s) 43, 92, 134, 147, 224, 325
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 2 cut(s) 57, 230
SsiI CCGC 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 134
TaqI TCGA 3 cut(s) 17, 262, 350
TasI AATT 2 cut(s) 57, 230
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 2 cut(s) 14, 155
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 3 cut(s) 85, 145, 279
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 3 cut(s) 219, 248, 251
Tsp45I GTSAC 1 cut(s) 280
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 3 cut(s) 85, 145, 279
XapI RAATTY 1 cut(s) 57
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.