Prupe.1G108100_v2.0.a1

Proteasome assembly chaperone 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014519
Physical Location & Seq
Reverse (-)
8656701 .. 8659229
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G108100.1

Sequence Viewer

Length: 486 bp
ATGGCTCGAGAAGATCTAGACCTCGGTGCTCTAAACCATGCTATGAGCTCTGCTCAAATTTCGAAAGACAAAGAACCGGCTGCTCCCAGCTACTACAGCAACGAAGACGATGCTGGTGGCGTGCAGATCACGTGCTTCACTGAAGTCGTCAACGATACTACTTTCCACTTCCAAATCATGCGCCTTCCCAAGCAGATATATGCATGGATTGGCTGCAACTCTGCAAAATTGGGACATTTGTATGCAGCAGCACCCATGAGACCTAACAGTACAGTGGGTGTTACATCCATACTTGGTGGGGCTTCTGATAATACAGGGTCGAGCATTGCTCGAAGATTAGTTTTAAAGACGGGACTGAATATAATTCTGGCTTGCAACATTCCTAAGAATAGCCCCATGATTGAGGCAGATGCTGAAAAGTTGTTGGTTCTGAAGCTAATCAGTCTTGGGTACACAAGGCCAAAGTCAGAAGGATTGTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAC4

Protein Analysis

162

Amino Acids

17.24

Weight (kDa)

6.82

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48170
fragaria_vesca FvH4_4g21260
malus_domestica MD13G1143600.v1.1 MD16G1146600.v1.1
prunus_persica Prupe.1G108100_v2.0.a1
pyrus_communis pycom13g12450
rosa_chinensis RchiOBHm_Chr4g0426881
rosa_laevigata RLG00000007271
rosa_roxburghii Rroxscaffold_5G00368850 Rroxscaffold_5G00379210
rosa_samantha Rh2DG030000 Rh4AG270600 Rh4BG276900 Rh4CG291600 Rh4DG274100
rosa_wichuraiana Rw4G023480 Rw5G000420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 2 cut(s) 162, 452
AcvI CACGTG 1 cut(s) 132
AfaI GTAC 2 cut(s) 271, 452
AluBI AGCT 3 cut(s) 48, 90, 436
AluI AGCT 3 cut(s) 48, 90, 436
Alw21I GWGCWC 2 cut(s) 31, 50
Alw26I GTCTC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 4 cut(s) 80, 213, 245, 248
ApoI RAATTY 1 cut(s) 57
AspLEI GCGC 1 cut(s) 183
AsuII TTCGAA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 6
BanII GRGCYC 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 132
BbsI GAAGAC 2 cut(s) 111, 471
Bbv12I GWGCWC 2 cut(s) 31, 50
BbvI GCAGC 4 cut(s) 67, 200, 257, 260
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 94
BglII AGATCT 1 cut(s) 13
BisI GCNGC 4 cut(s) 81, 214, 246, 249
BlsI GCNGC 4 cut(s) 82, 215, 247, 250
BmeT110I CYCGRG 1 cut(s) 6
BmsI GCATC 2 cut(s) 100, 400
BpiI GAAGAC 2 cut(s) 111, 471
BplI GAGNNNNNCTC 4 cut(s) 37, 69, 313, 345
Bpu14I TTCGAA 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 324
BseXI GCAGC 4 cut(s) 67, 200, 257, 260
BseYI CCCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 460
BsiHKAI GWGCWC 2 cut(s) 31, 50
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 2 cut(s) 246, 366
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 2 cut(s) 246, 366
BsnI GGCC 1 cut(s) 460
Bso31I GGTCTC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 31, 50
Bsp143I GATC 2 cut(s) 13, 126
BspANI GGCC 1 cut(s) 460
BspT104I TTCGAA 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 13, 126
Bst4CI ACNGT 2 cut(s) 269, 274
BstBAI YACGTR 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 122, 373
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 2 cut(s) 16, 129
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 2 cut(s) 13, 126
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 94
BstV1I GCAGC 4 cut(s) 67, 200, 257, 260
BstV2I GAAGAC 2 cut(s) 111, 471
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 1 cut(s) 460
BtsCI GGATG 1 cut(s) 284
BtsIMutI CAGTG 2 cut(s) 138, 279
Cac8I GCNNGC 2 cut(s) 122, 373
CaiI CAGNNNCTG 1 cut(s) 413
CfoI GCGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 76
Csp6I GTAC 2 cut(s) 270, 451
CviAII CATG 5 cut(s) 38, 178, 204, 256, 397
CviQI GTAC 2 cut(s) 270, 451
DdeI CTNAG 1 cut(s) 384
DpnI GATC 2 cut(s) 15, 128
DpnII GATC 2 cut(s) 13, 126
DraI TTTAAA 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 162, 452
Eco72I CACGTG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 5 cut(s) 41, 181, 207, 259, 400
FaqI GGGAC 2 cut(s) 246, 366
FatI CATG 5 cut(s) 37, 177, 203, 255, 396
Fnu4HI GCNGC 4 cut(s) 81, 214, 246, 249
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 4 cut(s) 81, 214, 246, 249
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 182
GluI GCNGC 4 cut(s) 81, 214, 246, 249
GsaI CCCAGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 460
HapII CCGG 1 cut(s) 77
HhaI GCGC 1 cut(s) 183
Hin1II CATG 5 cut(s) 41, 181, 207, 259, 400
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HpaII CCGG 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 151, 453
Hpy188I TCNGA 3 cut(s) 307, 432, 469
Hpy188III TCNNGA 2 cut(s) 8, 17
Hpy8I GTNNAC 2 cut(s) 151, 453
HpyAV CCTTC 2 cut(s) 194, 464
HpyCH4III ACNGT 2 cut(s) 269, 274
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 6 cut(s) 124, 203, 216, 224, 245, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 5 cut(s) 41, 181, 207, 259, 400
HspAI GCGC 1 cut(s) 181
Kzo9I GATC 2 cut(s) 13, 126
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 90, 99, 100, 300, 353
Lsp1109I GCAGC 4 cut(s) 67, 200, 257, 260
LweI GCATC 2 cut(s) 100, 400
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 15, 128
MboI GATC 2 cut(s) 13, 126
MboII GAAGA 4 cut(s) 23, 116, 345, 471
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 2 cut(s) 31, 50
MluCI AATT 3 cut(s) 57, 227, 363
MnlI CCTC 2 cut(s) 32, 397
Mph1103I ATGCAT 1 cut(s) 205
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 240
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 2 cut(s) 13, 126
NlaIII CATG 5 cut(s) 41, 181, 207, 259, 400
NsiI ATGCAT 1 cut(s) 205
NspV TTCGAA 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 6
PkrI GCNGC 4 cut(s) 82, 215, 247, 250
PmaCI CACGTG 1 cut(s) 132
PmlI CACGTG 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 50
PspCI CACGTG 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 2 cut(s) 271, 452
RsaNI GTAC 2 cut(s) 270, 451
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 4 cut(s) 81, 214, 246, 249
Sau3AI GATC 2 cut(s) 13, 126
SduI GDGCHC 2 cut(s) 31, 50
SetI ASST 6 cut(s) 24, 50, 92, 134, 265, 438
SfaNI GCATC 2 cut(s) 100, 400
SfcI CTRYAG 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 62
SlaI CTCGAG 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 3 cut(s) 57, 227, 363
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 50
TaaI ACNGT 2 cut(s) 269, 274
TaiI ACGT 1 cut(s) 134
TaqI TCGA 4 cut(s) 7, 62, 320, 331
TasI AATT 3 cut(s) 57, 227, 363
TatI WGTACW 1 cut(s) 269
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 145, 279
TseI GCWGC 4 cut(s) 80, 213, 245, 248
TspDTI ATGAA 1 cut(s) 471
TspRI CASTG 2 cut(s) 145, 279
XapI RAATTY 1 cut(s) 57
XbaI TCTAGA 1 cut(s) 16
XhoI CTCGAG 1 cut(s) 6
XspI CTAG 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.