Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004325

Physical Location & Seq

Genomic Coordinates Forward (+)

17790364 .. 17792340

Gene Structure 1977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48175.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAAGAGGACCATTGTGAGGATTCTCATAATTATATGGGTTTTGCTCTGCATCAGGCTAAACTTGCTCTGGAGGCTCTTGAAGTTCCCGTGGGATGTGTTTTTCTTGAGGACGGTAAGGTCATTGCTTCAGGGCGAAACCGAACAAATGAGACACGCAATGCCACAAGACATGCAGAGATGGAAGCAATTGATCAGCTTGTCGGACAGTGGCAGAAAGATGGACTCTCACCTTCACAAGTCGCTGAGAAATTCTCGAAATGTGTTCTTTATGTAACATGTGAACCTTGCATAATGTGTGCATCGGCCTTATCGTTTCTCGGTATCAAGGAAGTGTATTATGGATGTCCAAATGATAAATTTGGGGGATGTGGTTCCATTTTGTCGCTTCACTTAGGTAGTGAGGAAGCTCAAAGAGGAAAAGGATACAAGTGCAGAGGAGGAATAATGGCAGAAGAAGCTGTCTCTCTTTTCAAATGTTTCTATGAGCAAGGCAATCCCAACGCTCCAAAGCCACACCGCCCTGTTGTTCAAAGAGAGAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0052717 GO:0052718 GO:0071704 GO:0090304 GO:1901360 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

182

Amino Acids

20.11

Weight (kDa)

5.88

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	18 - 101	6.4e-17	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	19 - 112	5.1e-12	MafB19-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175
fragaria_vesca	FvH4_4g07280 FvH4_5g15360 FvH4_5g15360
malus_domestica	MD13G1241600.v1.1
prunus_persica	Prupe.1G075100_v2.0.a1
pyrus_communis	pycom13g21350
rosa_chinensis	RchiOBHm_Chr4g0399541 RchiOBHm_Chr4g0399571 RchiOBHm_Chr7g0180711
rosa_laevigata	RLG00000005238 RLG00000009262
rosa_multiflora	Rmu_sc0002285.1_g000033
rosa_roxburghii	Rroxscaffold_3G00272630 Rroxscaffold_5G00344420
rosa_rugosa	Rorug04G0017400 Rorug06G0435100
rosa_samantha	Rh4AG095200 Rh4BG092600 Rh4CG103700 Rh4DG087600 Rh7AG036800 Rh7BG036600 Rh7CG038300 Rh7DG036800
rosa_wichuraiana	Rw4G007830 Rw7G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AciI	CCGC	1 cut(s)	520
AcsI	RAATTY	2 cut(s)	251, 359
AcuI	CTGAAG	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	83, 475, 533
AluBI	AGCT	3 cut(s)	199, 410, 461
AluI	AGCT	3 cut(s)	199, 410, 461
Alw26I	GTCTC	2 cut(s)	146, 469
AoxI	GGCC	1 cut(s)	306
ApoI	RAATTY	2 cut(s)	251, 359
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	10
BccI	CCATC	2 cut(s)	175, 215
BciVI	GTATCC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	146, 469
BfuI	GTATCC	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	376
BmsI	GCATC	2 cut(s)	61, 311
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse3DI	GCAATG	2 cut(s)	123, 166
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	3 cut(s)	101, 350, 374
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	2 cut(s)	123, 166
BseMII	CTCAG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	453
BsgI	GTGCAG	1 cut(s)	454
BshFI	GGCC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	2 cut(s)	146, 469
BsnI	GGCC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	520
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	376
BsrDI	GCAATG	2 cut(s)	123, 166
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	116, 210
BstDEI	CTNAG	2 cut(s)	246, 394
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	3 cut(s)	101, 350, 374
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	2 cut(s)	146, 469
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 74, 458
BstNSI	RCATGY	2 cut(s)	176, 282
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	101, 350, 374
BtsIMutI	CAGTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	10
CviAII	CATG	2 cut(s)	173, 279
CviJI	RGCY	7 cut(s)	59, 77, 199, 308, 410, 461, 514
CviKI_1	RGCY	7 cut(s)	59, 77, 199, 308, 410, 461, 514
DdeI	CTNAG	2 cut(s)	246, 394
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	114
FaeI	CATG	2 cut(s)	176, 282
FaiI	YATR	9 cut(s)	30, 36, 38, 174, 273, 280, 293, 342, 486
FatI	CATG	2 cut(s)	172, 278
FbaI	TGATCA	1 cut(s)	193
FokI	GGATG	3 cut(s)	108, 357, 381
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	176, 282
HinfI	GANTC	2 cut(s)	23, 225
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	4 cut(s)	71, 80, 107, 256
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	116, 210
HpyCH4V	TGCA	5 cut(s)	52, 176, 291, 302, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 74, 458
HpyF3I	CTNAG	2 cut(s)	246, 394
Hsp92II	CATG	2 cut(s)	176, 282
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	511
LpnPI	CCDG	4 cut(s)	41, 56, 117, 537
LweI	GCATC	2 cut(s)	61, 311
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	17, 467
MfeI	CAATTG	1 cut(s)	189
MluCI	AATT	4 cut(s)	31, 189, 251, 359
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	8 cut(s)	13, 67, 103, 397, 410, 431, 434, 534
MunI	CAATTG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	65, 74, 458
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	2 cut(s)	176, 282
NlaIV	GGNNCC	1 cut(s)	376
NspI	RCATGY	2 cut(s)	176, 282
PciI	ACATGT	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PscI	ACATGT	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	219
SetI	ASST	7 cut(s)	123, 201, 235, 289, 400, 412, 463
SfaNI	GCATC	2 cut(s)	61, 311
SinI	GGWCC	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	4 cut(s)	31, 189, 251, 359
SsiI	CCGC	1 cut(s)	520
TaaI	ACNGT	2 cut(s)	116, 210
TaqI	TCGA	1 cut(s)	257
TasI	AATT	4 cut(s)	31, 189, 251, 359
TfiI	GAWTC	1 cut(s)	23
TscAI	CASTG	1 cut(s)	215
TspRI	CASTG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	2 cut(s)	251, 359
XceI	RCATGY	2 cut(s)	176, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.