Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004325

Physical Location & Seq

Genomic Coordinates Forward (+)

8706702 .. 8710483

Gene Structure 3782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCATCTCTTGGAGAAGAATCAGAAGATAAACCTAATGATGATACCCTTAAATTTATGGAGCTTGCTATAGAACAGGCAAAGCTTGCTTTGGATAGCCTTGAAGTTCCTGTTGGCTGTGTGATTGTTGAAGATGGGAAGGTCATAGCTTGTGGAAGGAATCGAACTAATGAGACACGAAATGCTACAAGACATGCAGAGATGGAAGCCATTGACATTCTTCTTGAGCAATGGAGAGAAAAGAGGCTTTCAACGTTAGAAGTTGCTGAAAATTTTTCAAATTGTAACCTCTATGTCACATGTGAACCATGCATAATGTGTGCAGCATCTTTATCAATTGTTGGTATCAAGGAAGTATTTTATGGCTGTGCTAATGACAAATTTGGTGGGTGCGGATCAGTACTGTCATTGCATTCTAGTAGCTCCGAGCCAGTCATGAGCGATGGAGTACCACAGGGGAAAAGTTTCAAATGCACTGGAGGGATAATGGCATCAGAAGCAGTCTCTCTTTTCCGCAATTTCTATGAGCAAGGAAACCCTAATGCTCCAAAGCCTCATAGACCTCTCGTTCACCAGGCCATAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0052717 GO:0052718 GO:0071704 GO:0090304 GO:1901360 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

196

Amino Acids

21.25

Weight (kDa)

4.93

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MafB19-deam	PF14437	15 - 141	2.3e-17	MafB19-like deaminase
dCMP_cyt_deam_1	PF00383	17 - 123	4.8e-23	Cytidine and deoxycytidylate deaminase zinc-binding region
Bd3614-deam	PF14439	41 - 115	4.8e-06	Bd3614-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175
fragaria_vesca	FvH4_4g07280 FvH4_5g15360 FvH4_5g15360
malus_domestica	MD13G1241600.v1.1
prunus_persica	Prupe.1G075100_v2.0.a1
pyrus_communis	pycom13g21350
rosa_chinensis	RchiOBHm_Chr4g0399541 RchiOBHm_Chr4g0399571 RchiOBHm_Chr7g0180711
rosa_laevigata	RLG00000005238 RLG00000009262
rosa_multiflora	Rmu_sc0002285.1_g000033
rosa_roxburghii	Rroxscaffold_3G00272630 Rroxscaffold_5G00344420
rosa_rugosa	Rorug04G0017400 Rorug06G0435100
rosa_samantha	Rh4AG095200 Rh4BG092600 Rh4CG103700 Rh4DG087600 Rh7AG036800 Rh7BG036600 Rh7CG038300 Rh7DG036800
rosa_wichuraiana	Rw4G007830 Rw7G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	393, 514
AclI	AACGTT	1 cut(s)	254
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	3 cut(s)	53, 271, 380
AfaI	GTAC	2 cut(s)	402, 450
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	5 cut(s)	104, 131, 252, 279, 469
AjnI	CCWGG	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	4 cut(s)	64, 85, 149, 423
AluI	AGCT	4 cut(s)	64, 85, 149, 423
Alw26I	GTCTC	2 cut(s)	167, 508
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	53, 271, 380
Asp700I	GAANNNNTTC	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	3 cut(s)	128, 196, 437
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	2 cut(s)	167, 508
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BmcAI	AGTACT	1 cut(s)	402
Bme1390I	CCNGG	1 cut(s)	575
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	3 cut(s)	14, 335, 500
BpmI	CTGGAG	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	245
Bse1I	ACTGG	2 cut(s)	431, 481
Bse3DI	GCAATG	2 cut(s)	236, 407
BseBI	CCWGG	1 cut(s)	575
BseMI	GCAATG	2 cut(s)	236, 407
BseNI	ACTGG	2 cut(s)	431, 481
BseXI	GCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	578
BsmAI	GTCTC	2 cut(s)	167, 508
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	578
Bsp143I	GATC	1 cut(s)	395
BspACI	CCGC	2 cut(s)	393, 514
BspANI	GGCC	1 cut(s)	578
BspHI	TCATGA	1 cut(s)	435
BspPI	GGATC	1 cut(s)	403
BsrDI	GCAATG	2 cut(s)	236, 407
BsrI	ACTGG	2 cut(s)	431, 481
BssMI	GATC	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	66, 87
BstKTI	GATC	1 cut(s)	398
BstMAI	GTCTC	2 cut(s)	167, 508
BstMBI	GATC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 497
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	2 cut(s)	197, 303
BstSCI	CCNGG	1 cut(s)	573
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	2 cut(s)	66, 87
CciI	TCATGA	1 cut(s)	435
Csp6I	GTAC	2 cut(s)	401, 449
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	4 cut(s)	194, 300, 309, 436
CviQI	GTAC	2 cut(s)	401, 449
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	314
FaeI	CATG	4 cut(s)	197, 303, 312, 439
FatI	CATG	4 cut(s)	193, 299, 308, 435
Fnu4HI	GCNGC	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	578
Hin1II	CATG	4 cut(s)	197, 303, 312, 439
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	2 cut(s)	20, 160
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	305, 571
Hpy188I	TCNGA	3 cut(s)	25, 427, 496
Hpy188III	TCNNGA	2 cut(s)	224, 436
Hpy8I	GTNNAC	2 cut(s)	305, 571
HpyAV	CCTTC	2 cut(s)	133, 150
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	5 cut(s)	197, 312, 323, 412, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 497
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	4 cut(s)	197, 303, 312, 439
Kzo9I	GATC	1 cut(s)	395
LmnI	GCTCC	3 cut(s)	61, 428, 550
LpnPI	CCDG	6 cut(s)	62, 123, 440, 444, 462, 560
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	3 cut(s)	14, 335, 500
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	284, 295
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	4 cut(s)	29, 38, 143, 212
MfeI	CAATTG	1 cut(s)	336
MluCI	AATT	6 cut(s)	53, 271, 280, 336, 380, 517
MnlI	CCTC	5 cut(s)	237, 299, 473, 564, 573
Mph1103I	ATGCAT	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	575
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	2 cut(s)	86, 497
NdeII	GATC	1 cut(s)	395
NlaIII	CATG	4 cut(s)	197, 303, 312, 439
NmuCI	GTSAC	1 cut(s)	295
NsiI	ATGCAT	1 cut(s)	314
NspI	RCATGY	2 cut(s)	197, 303
PagI	TCATGA	1 cut(s)	435
PciI	ACATGT	1 cut(s)	299
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	20, 160
PkrI	GCNGC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
RsaI	GTAC	2 cut(s)	402, 450
RsaNI	GTAC	2 cut(s)	401, 449
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	395
ScaI	AGTACT	1 cut(s)	402
ScrFI	CCNGG	1 cut(s)	575
SetI	ASST	9 cut(s)	37, 66, 87, 144, 151, 257, 291, 425, 565
SfaNI	GCATC	3 cut(s)	14, 335, 500
SfcI	CTRYAG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	6 cut(s)	53, 271, 280, 336, 380, 517
SsiI	CCGC	2 cut(s)	393, 514
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	573
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	163
TasI	AATT	6 cut(s)	53, 271, 280, 336, 380, 517
TatI	WGTACW	1 cut(s)	400
TfiI	GAWTC	2 cut(s)	20, 160
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	295
TspRI	CASTG	1 cut(s)	481
XapI	RAATTY	3 cut(s)	53, 271, 380
XceI	RCATGY	2 cut(s)	197, 303
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	1 cut(s)	417
ZrmI	AGTACT	1 cut(s)	402
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.