Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004325

Physical Location & Seq

Genomic Coordinates Forward (+)

15878189 .. 15882767

Gene Structure 4579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG092600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAACATGGTTTGTCACTTTTTTGCTGTGTTATACACATATAAGTCTGCTTCTTACATAAAAATATGGAAATTCACACCTATGGGTTTCTGTGCTTGCCTAAAAATGCAGGCTACAAGGCATGCAGAAATGGAAGCCATTGATACTCTTCTTGAGCAGTGGAGAGAAAAGAGGCTTTCAACTTCAGAAGTTGCGGAAATCTTTTCAAAATGTAACCTCTATGTTACATGTGAACCATGCATAATGTGTGCAGCAGCTTTATCAATTGTTGGTATCAAGGAAGTATTTTATGGCTGTGCCAATGACAAATTTGGTGGGTGCGGATCAATACTGTCGCTGCATTCAAGTAGCTCTGAGGCACTCATGAGTGGTGGAGTACCACAGGGGAAAGGTTTCAAATGCACTGGAGGGATAATGGCATCAGAAGCAGTCTCTCTTTTCCGCAATTTTTACGAGCAAGGAAACCCTAATGCTCCAAAGCCTCATAGACCTCTGACTCACCAGGCCATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0052717 GO:0052718 GO:0071704 GO:0090304 GO:1901360 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

171

Amino Acids

18.86

Weight (kDa)

8.32

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MafB19-deam	PF14437	34 - 108	2.8e-08	MafB19-like deaminase
dCMP_cyt_deam_1	PF00383	37 - 99	1.2e-10	Cytidine and deoxycytidylate deaminase zinc-binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175
fragaria_vesca	FvH4_4g07280 FvH4_5g15360 FvH4_5g15360
malus_domestica	MD13G1241600.v1.1
prunus_persica	Prupe.1G075100_v2.0.a1
pyrus_communis	pycom13g21350
rosa_chinensis	RchiOBHm_Chr4g0399541 RchiOBHm_Chr4g0399571 RchiOBHm_Chr7g0180711
rosa_laevigata	RLG00000005238 RLG00000009262
rosa_multiflora	Rmu_sc0002285.1_g000033
rosa_roxburghii	Rroxscaffold_3G00272630 Rroxscaffold_5G00344420
rosa_rugosa	Rorug04G0017400 Rorug06G0435100
rosa_samantha	Rh4AG095200 Rh4BG092600 Rh4CG103700 Rh4DG087600 Rh7AG036800 Rh7BG036600 Rh7CG038300 Rh7DG036800
rosa_wichuraiana	Rw4G007830 Rw7G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	194, 321, 442
AclWI	GGATC	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	71, 308
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	4 cut(s)	180, 207, 345, 397
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	2 cut(s)	257, 351
AluI	AGCT	2 cut(s)	257, 351
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	1 cut(s)	504
ApeKI	GCWGC	3 cut(s)	251, 254, 337
ApoI	RAATTY	2 cut(s)	71, 308
Asp700I	GAANNNNTTC	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	491
BbvI	GCAGC	3 cut(s)	263, 266, 324
BciT130I	CCWGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	436
BisI	GCNGC	3 cut(s)	252, 255, 338
BlsI	GCNGC	3 cut(s)	253, 256, 339
Bme1390I	CCNGG	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	1 cut(s)	428
BpmI	CTGGAG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	409
BseXI	GCAGC	3 cut(s)	263, 266, 324
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	506
Bsp143I	GATC	1 cut(s)	323
BspACI	CCGC	3 cut(s)	194, 321, 442
BspANI	GGCC	1 cut(s)	506
BspCNI	CTCAG	1 cut(s)	346
BspHI	TCATGA	1 cut(s)	363
BspPI	GGATC	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	409
BssMI	GATC	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	97, 111, 123
BstDEI	CTNAG	1 cut(s)	354
BstKTI	GATC	1 cut(s)	326
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	323
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	2 cut(s)	125, 231
BstSCI	CCNGG	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	263, 266, 324
BsuRI	GGCC	1 cut(s)	506
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	164, 402
Cac8I	GCNNGC	3 cut(s)	97, 111, 123
CciI	TCATGA	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	5 cut(s)	7, 122, 228, 237, 364
CviJI	RGCY	8 cut(s)	113, 137, 175, 257, 294, 351, 481, 506
CviKI_1	RGCY	8 cut(s)	113, 137, 175, 257, 294, 351, 481, 506
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	501
EcoT22I	ATGCAT	1 cut(s)	242
FaeI	CATG	5 cut(s)	10, 125, 231, 240, 367
FatI	CATG	5 cut(s)	6, 121, 227, 236, 363
Fnu4HI	GCNGC	3 cut(s)	252, 255, 338
Fsp4HI	GCNGC	3 cut(s)	252, 255, 338
GluI	GCNGC	3 cut(s)	252, 255, 338
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	506
Hin1II	CATG	5 cut(s)	10, 125, 231, 240, 367
HinfI	GANTC	1 cut(s)	496
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	4 cut(s)	187, 355, 424, 495
Hpy188III	TCNNGA	2 cut(s)	152, 364
Hpy8I	GTNNAC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	6 cut(s)	109, 125, 240, 251, 340, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	1 cut(s)	354
Hsp92II	CATG	5 cut(s)	10, 125, 231, 240, 367
Kzo9I	GATC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	4 cut(s)	95, 368, 390, 488
Lsp1109I	GCAGC	3 cut(s)	263, 266, 324
LweI	GCATC	1 cut(s)	428
MaeIII	GTNAC	3 cut(s)	14, 212, 223
MalI	GATC	1 cut(s)	325
MboI	GATC	1 cut(s)	323
MboII	GAAGA	1 cut(s)	140
MfeI	CAATTG	1 cut(s)	264
MluCI	AATT	4 cut(s)	71, 264, 308, 445
MlyI	GAGTC	1 cut(s)	490
MnlI	CCTC	6 cut(s)	165, 227, 349, 401, 492, 501
Mph1103I	ATGCAT	1 cut(s)	242
MroXI	GAANNNNTTC	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	503
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	1 cut(s)	323
NlaIII	CATG	5 cut(s)	10, 125, 231, 240, 367
NmuCI	GTSAC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	242
NspI	RCATGY	2 cut(s)	125, 231
PaeI	GCATGC	1 cut(s)	125
PagI	TCATGA	1 cut(s)	363
PciI	ACATGT	1 cut(s)	227
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	253, 256, 339
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PscI	ACATGT	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	80
SatI	GCNGC	3 cut(s)	252, 255, 338
Sau3AI	GATC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	503
SetI	ASST	6 cut(s)	82, 219, 259, 353, 394, 493
SfaNI	GCATC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	125
Sse9I	AATT	4 cut(s)	71, 264, 308, 445
SsiI	CCGC	3 cut(s)	194, 321, 442
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	333
TasI	AATT	4 cut(s)	71, 264, 308, 445
TscAI	CASTG	2 cut(s)	164, 409
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	3 cut(s)	251, 254, 337
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	164, 409
XapI	RAATTY	2 cut(s)	71, 308
XceI	RCATGY	2 cut(s)	125, 231
XmnI	GAANNNNTTC	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.