Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004325

Physical Location & Seq

Genomic Coordinates Forward (+)

6680275 .. 6686841

Gene Structure 6567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGATGGCATCTCTTGGAGAGGAGAACTCTAACGATGATACCCTAATGTTTATGGATCTTGCTATACAACAGGCAAAGCTAGCTTTGGACAGCCTTGAAGTTCCTGTCGGCTGTGTGATTGTTCGAGATGGAAAGGTCATAGCATCTGGAAGGAATCGTACTAACGAGACAAGAAATTCTACAAGGCATGCAGAGATGGAAGCCATTGATACTCTTCTTCAGCAGTGGAGAGAAAAGAGGCTTTCAACTTCAGAAGTTGCTGAAATGTTTTCAAAATGTTACCTCTATGTTACATGTGAACCATGCATAATGTGTGCAGCAGCTTTATCAATTATCGGTATCAAGGAAGTATTTTATGGTTGTGCCAATGACAAATTTGGTGGGTGTGGATCAATACTGTCATTGCATTCAAGTAGCTCTGAGGCACCCAGGAATGGTGGAGTACCACAGGGGAAAGGTTTCAAATGCACTGGAGGGATAATGGCATCAGAAGCAGTCTTTCTTTTCCACAACTTTTACGAGCAAGGAAACCCTAATGCTCCAAAGCCTCATAAACCTCTGGTTCACCAGGCCATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0052717 GO:0052718 GO:0071704 GO:0090304 GO:1901360 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

194

Amino Acids

21.04

Weight (kDa)

5.95

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	16 - 121	2.4e-24	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	16 - 130	3.8e-17	MafB19-like deaminase
Bd3614-deam	PF14439	38 - 113	3.2e-06	Bd3614-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175
fragaria_vesca	FvH4_4g07280 FvH4_5g15360 FvH4_5g15360
malus_domestica	MD13G1241600.v1.1
prunus_persica	Prupe.1G075100_v2.0.a1
pyrus_communis	pycom13g21350
rosa_chinensis	RchiOBHm_Chr4g0399541 RchiOBHm_Chr4g0399571 RchiOBHm_Chr7g0180711
rosa_laevigata	RLG00000005238 RLG00000009262
rosa_multiflora	Rmu_sc0002285.1_g000033
rosa_roxburghii	Rroxscaffold_3G00272630 Rroxscaffold_5G00344420
rosa_rugosa	Rorug04G0017400 Rorug06G0435100
rosa_samantha	Rh4AG095200 Rh4BG092600 Rh4CG103700 Rh4DG087600 Rh7AG036800 Rh7BG036600 Rh7CG038300 Rh7DG036800
rosa_wichuraiana	Rw4G007830 Rw7G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AclWI	GGATC	2 cut(s)	63, 397
AcsI	RAATTY	2 cut(s)	175, 374
AcuI	CTGAAG	2 cut(s)	203, 234
AfaI	GTAC	2 cut(s)	160, 444
AfiI	CCNNNNNNNGG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	5 cut(s)	98, 246, 273, 411, 463
AjnI	CCWGG	2 cut(s)	428, 567
AluBI	AGCT	4 cut(s)	79, 83, 323, 417
AluI	AGCT	4 cut(s)	79, 83, 323, 417
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	63, 397
AoxI	GGCC	1 cut(s)	570
ApeKI	GCWGC	2 cut(s)	317, 320
ApoI	RAATTY	2 cut(s)	175, 374
Asp700I	GAANNNNTTC	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	424
BarI	GAAGNNNNNNTAC	2 cut(s)	142, 174
BbvI	GCAGC	2 cut(s)	329, 332
BccI	CCATC	2 cut(s)	122, 190
BciT130I	CCWGG	2 cut(s)	430, 569
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	318, 321
BlsI	GCNGC	2 cut(s)	319, 322
Bme1390I	CCNGG	2 cut(s)	430, 569
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	2 cut(s)	430, 569
BmsI	GCATC	3 cut(s)	17, 152, 494
BmtI	GCTAGC	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	430, 569
BseDI	CCNNGG	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	401
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	329, 332
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	572
BshNI	GGYRCC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	572
Bsp143I	GATC	2 cut(s)	55, 389
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	426
BspOI	GCTAGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	63, 397
BspT107I	GGYRCC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	2 cut(s)	55, 389
Bst2UI	CCWGG	2 cut(s)	430, 569
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	81, 189
BstDEI	CTNAG	1 cut(s)	420
BstKTI	GATC	2 cut(s)	58, 392
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	55, 389
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 491
BstNI	CCWGG	2 cut(s)	430, 569
BstNSI	RCATGY	2 cut(s)	191, 297
BstSCI	CCNGG	2 cut(s)	428, 567
BstV1I	GCAGC	2 cut(s)	329, 332
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	572
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	230, 468
Cac8I	GCNNGC	2 cut(s)	81, 189
Csp6I	GTAC	2 cut(s)	159, 443
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	3 cut(s)	188, 294, 303
CviQI	GTAC	2 cut(s)	159, 443
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	57, 391
DpnII	GATC	2 cut(s)	55, 389
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	203, 234
EcoRII	CCWGG	2 cut(s)	428, 567
EcoT22I	ATGCAT	1 cut(s)	308
FaeI	CATG	3 cut(s)	191, 297, 306
FatI	CATG	3 cut(s)	187, 293, 302
Fnu4HI	GCNGC	2 cut(s)	318, 321
Fsp4HI	GCNGC	2 cut(s)	318, 321
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	2 cut(s)	318, 321
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	572
Hin1II	CATG	3 cut(s)	191, 297, 306
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	299, 565
Hpy188I	TCNGA	3 cut(s)	253, 421, 490
Hpy188III	TCNNGA	2 cut(s)	125, 147
Hpy8I	GTNNAC	2 cut(s)	299, 565
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	5 cut(s)	191, 306, 317, 406, 468
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 491
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	191, 297, 306
Kzo9I	GATC	2 cut(s)	55, 389
LmnI	GCTCC	1 cut(s)	544
LpnPI	CCDG	9 cut(s)	56, 117, 132, 415, 434, 442, 456, 545, 554
Lsp1109I	GCAGC	2 cut(s)	329, 332
LweI	GCATC	3 cut(s)	17, 152, 494
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	278, 289
MalI	GATC	2 cut(s)	57, 391
MboI	GATC	2 cut(s)	55, 389
MboII	GAAGA	2 cut(s)	206, 209
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	3 cut(s)	175, 330, 374
MnlI	CCTC	7 cut(s)	13, 231, 293, 415, 467, 558, 567
Mph1103I	ATGCAT	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	430, 569
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	2 cut(s)	430, 569
MwoI	GCNNNNNNNGC	2 cut(s)	80, 491
NdeII	GATC	2 cut(s)	55, 389
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	191, 297, 306
NlaIV	GGNNCC	1 cut(s)	426
NsiI	ATGCAT	1 cut(s)	308
NspI	RCATGY	2 cut(s)	191, 297
PaeI	GCATGC	1 cut(s)	191
PciI	ACATGT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	319, 322
PscI	ACATGT	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	428, 567
PspGI	CCWGG	2 cut(s)	428, 567
PspN4I	GGNNCC	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	2 cut(s)	160, 444
RsaNI	GTAC	2 cut(s)	159, 443
SatI	GCNGC	2 cut(s)	318, 321
Sau3AI	GATC	2 cut(s)	55, 389
ScrFI	CCNGG	2 cut(s)	430, 569
SetI	ASST	8 cut(s)	81, 85, 138, 285, 325, 419, 460, 559
SfaNI	GCATC	3 cut(s)	17, 152, 494
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	3 cut(s)	175, 330, 374
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	428, 567
TaaI	ACNGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	124
TasI	AATT	3 cut(s)	175, 330, 374
TfiI	GAWTC	1 cut(s)	154
TscAI	CASTG	2 cut(s)	230, 475
TseI	GCWGC	2 cut(s)	317, 320
TspRI	CASTG	2 cut(s)	230, 475
XapI	RAATTY	2 cut(s)	175, 374
XceI	RCATGY	2 cut(s)	191, 297
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.