Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004325

Physical Location & Seq

Genomic Coordinates Forward (+)

25109854 .. 25118287

Gene Structure 8434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1241600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCGGAGAGACAGATCCGTTTTAATAGGAAAGAAGGAAACGCCGCAGCCTGTTGCCCTCAGATTACTTGGCGCGATACCGGGGATGGCATCTCTTGGAGAAGAGTACCCTGACGACACCCTTAAATTTATGCGTCTTGCTATAGAACAGGCAAATGAAGCTTTGGACAGCCTTGAAGTTCCTGTTGGCTGTGTGATTGTTGAAGATGGGAAGGTCATAGCCTCGGGAAGAAATCGAACTAATGAGACACGAAATGCTACAAGGCATGCAGAGATGGAAGCCATTGATACTCTTCTTGAGCAGTGGAGAGAACAGAGGCTTTCAAAGTCACAAGTTGCCGAAAAGTTTTCAAAATGTAGACTCTATGTTACATGTGAGCCATGCATAATGTGTGCAGCGGCTTTATCATTTATTGGAATAAGGGAAGTATTTTATGGTTGTGCCAATGACAAATTTGGTGGGTGTGGATCAATATTGTCATTGCACTCAAGTAGCTTTGAGCCACAAACGAGTGGTGGAGCTCCAAAGGGGAAAGGATTCAAATGCACTGGAGGGATAATGGCAACAGAAGCAGTCTCACTTTTTCGCAGTTTTTATGAGCAGGGAAACCCTAATGCTCCAAAGCCTCATAGGCCTCTTGCTCAACAAGCAACGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0052717 GO:0052718 GO:0071704 GO:0090304 GO:1901360 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

220

Amino Acids

23.92

Weight (kDa)

8.1

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MafB19-deam	PF14437	39 - 156	2.1e-18	MafB19-like deaminase
dCMP_cyt_deam_1	PF00383	41 - 147	3e-24	Cytidine and deoxycytidylate deaminase zinc-binding region
Bd3614-deam	PF14439	65 - 140	9.3e-07	Bd3614-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175
fragaria_vesca	FvH4_4g07280 FvH4_5g15360 FvH4_5g15360
malus_domestica	MD13G1241600.v1.1
prunus_persica	Prupe.1G075100_v2.0.a1
pyrus_communis	pycom13g21350
rosa_chinensis	RchiOBHm_Chr4g0399541 RchiOBHm_Chr4g0399571 RchiOBHm_Chr7g0180711
rosa_laevigata	RLG00000005238 RLG00000009262
rosa_multiflora	Rmu_sc0002285.1_g000033
rosa_roxburghii	Rroxscaffold_3G00272630 Rroxscaffold_5G00344420
rosa_rugosa	Rorug04G0017400 Rorug06G0435100
rosa_samantha	Rh4AG095200 Rh4BG092600 Rh4CG103700 Rh4DG087600 Rh7AG036800 Rh7BG036600 Rh7CG038300 Rh7DG036800
rosa_wichuraiana	Rw4G007830 Rw7G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	1 cut(s)	74
AciI	CCGC	3 cut(s)	4, 44, 398
AclWI	GGATC	2 cut(s)	9, 475
AcsI	RAATTY	2 cut(s)	125, 452
AfaI	GTAC	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	176, 203, 324, 351, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	3 cut(s)	161, 495, 521
AluI	AGCT	3 cut(s)	161, 495, 521
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	3 cut(s)	3, 239, 580
AlwI	GGATC	2 cut(s)	9, 475
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	632
ApeKI	GCWGC	2 cut(s)	46, 395
ApoI	RAATTY	2 cut(s)	125, 452
Asp700I	GAANNNNTTC	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	81
AvaI	CYCGRG	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	523
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	2 cut(s)	58, 407
BccI	CCATC	3 cut(s)	79, 200, 268
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	3 cut(s)	3, 239, 580
BfmI	CTRYAG	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	631
BisI	GCNGC	4 cut(s)	44, 47, 396, 399
BlsI	GCNGC	4 cut(s)	45, 48, 397, 400
Bme1390I	CCNGG	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	570
BpuEI	CTTGAG	2 cut(s)	317, 472
BpuMI	CCSGG	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	80, 222
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	80, 222
BseGI	GGATG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	479
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	58, 407
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	80
BsmAI	GTCTC	3 cut(s)	3, 239, 580
BsnI	GGCC	1 cut(s)	634
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	2 cut(s)	14, 467
BspACI	CCGC	3 cut(s)	4, 44, 398
BspANI	GGCC	1 cut(s)	634
BspCNI	CTCAG	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	74
BspPI	GGATC	2 cut(s)	9, 475
BsrDI	GCAATG	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	80, 222
BssMI	GATC	2 cut(s)	14, 467
Bst6I	CTCTTC	2 cut(s)	96, 297
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	17, 470
BstMAI	GTCTC	3 cut(s)	3, 239, 580
BstMBI	GATC	2 cut(s)	14, 467
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 569, 631, 647
BstNSI	RCATGY	2 cut(s)	269, 375
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	58, 407
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	308, 546
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	1 cut(s)	74
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	106
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	3 cut(s)	266, 372, 381
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	2 cut(s)	16, 469
DpnII	GATC	2 cut(s)	14, 467
Eam1104I	CTCTTC	2 cut(s)	96, 297
EarI	CTCTTC	2 cut(s)	96, 297
Ecl136II	GAGCTC	1 cut(s)	521
Eco147I	AGGCCT	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	521
EcoT22I	ATGCAT	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	523
FaeI	CATG	3 cut(s)	269, 375, 384
FatI	CATG	3 cut(s)	265, 371, 380
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	4 cut(s)	44, 47, 396, 399
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	4 cut(s)	44, 47, 396, 399
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	4 cut(s)	44, 47, 396, 399
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	1 cut(s)	634
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	269, 375, 384
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	2 cut(s)	360, 537
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	2 cut(s)	225, 296
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	2 cut(s)	28, 205
HpyCH4V	TGCA	5 cut(s)	269, 384, 395, 484, 546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 569, 631, 647
HpyF3I	CTNAG	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	269, 375, 384
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	14, 467
LmnI	GCTCC	3 cut(s)	518, 526, 622
LpnPI	CCDG	7 cut(s)	63, 93, 123, 134, 195, 534, 587
Lsp1109I	GCAGC	2 cut(s)	58, 407
LweI	GCATC	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	327, 367
MalI	GATC	2 cut(s)	16, 469
MboI	GATC	2 cut(s)	14, 467
MboII	GAAGA	4 cut(s)	113, 215, 240, 284
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	2 cut(s)	125, 452
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	6 cut(s)	68, 232, 309, 545, 636, 645
Mph1103I	ATGCAT	1 cut(s)	386
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	2 cut(s)	23, 123
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	158, 569, 631, 647
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	14, 467
NlaIII	CATG	3 cut(s)	269, 375, 384
NmuCI	GTSAC	1 cut(s)	327
NsiI	ATGCAT	1 cut(s)	386
NspI	RCATGY	2 cut(s)	269, 375
PaeI	GCATGC	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	634
PciI	ACATGT	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	1 cut(s)	537
PkrI	GCNGC	4 cut(s)	45, 48, 397, 400
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PscI	ACATGT	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	2 cut(s)	23, 123
SatI	GCNGC	4 cut(s)	44, 47, 396, 399
Sau3AI	GATC	2 cut(s)	14, 467
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	523
SetI	ASST	4 cut(s)	163, 216, 497, 523
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	296, 487
SmoI	CTYRAG	2 cut(s)	296, 487
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	2 cut(s)	125, 452
SseBI	AGGCCT	1 cut(s)	634
SsiI	CCGC	3 cut(s)	4, 44, 398
SspI	AATATT	1 cut(s)	474
SstI	GAGCTC	1 cut(s)	523
StuI	AGGCCT	1 cut(s)	634
StyD4I	CCNGG	1 cut(s)	79
TaqI	TCGA	1 cut(s)	235
TasI	AATT	2 cut(s)	125, 452
TauI	GCSGC	2 cut(s)	46, 401
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	2 cut(s)	23, 123
Tru9I	TTAA	2 cut(s)	23, 123
TscAI	CASTG	2 cut(s)	308, 553
TseFI	GTSAC	1 cut(s)	327
TseI	GCWGC	2 cut(s)	46, 395
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	308, 553
XapI	RAATTY	2 cut(s)	125, 452
XceI	RCATGY	2 cut(s)	269, 375
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	536
Zsp2I	ATGCAT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.