Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002285.1

Orthogroup ID

OG0004325

Physical Location & Seq

Genomic Coordinates Forward (+)

137057 .. 141118

Gene Structure 4062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002285.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgcaggctacaaggcatgcagaaatggaagccattgatactcttcttgagcagtggagagaaaagaggctttcaacttcagcagttgcggaaatcttttcaaaatgtaacctctatgttacatgtgaaccatgcataatgtgtgcagcagctttatcaattgttggtatcaaggaagtattttatggctgtgccaatgacaaatttggtgggtgcggatcaatactgtcgctgcattcaagtagctctgaggcactcatgagtggtgcagtaccacaggggaaaggtttcaaatgcactggagggataatggcatcagaagcagtctctcttttccgcaatttttacgagcaaggaaaccctaatgtaccacaggggaaaggtttcaaatgcactggagggataatggcatcagaagcagtctctcttttccgcaatttttacgagcaaggaaaccctaatgctccaaagcctcatagacctctgactgaccaggccatacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0052717 GO:0052718 GO:0071704 GO:0090304 GO:1901360 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

168

Amino Acids

18.1

Weight (kDa)

6.81

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175
fragaria_vesca	FvH4_4g07280 FvH4_5g15360 FvH4_5g15360
malus_domestica	MD13G1241600.v1.1
prunus_persica	Prupe.1G075100_v2.0.a1
pyrus_communis	pycom13g21350
rosa_chinensis	RchiOBHm_Chr4g0399541 RchiOBHm_Chr4g0399571 RchiOBHm_Chr7g0180711
rosa_laevigata	RLG00000005238 RLG00000009262
rosa_multiflora	Rmu_sc0002285.1_g000033
rosa_roxburghii	Rroxscaffold_3G00272630 Rroxscaffold_5G00344420
rosa_rugosa	Rorug04G0017400 Rorug06G0435100
rosa_samantha	Rh4AG095200 Rh4BG092600 Rh4CG103700 Rh4DG087600 Rh7AG036800 Rh7BG036600 Rh7CG038300 Rh7DG036800
rosa_wichuraiana	Rw4G007830 Rw7G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	89, 216, 337, 433
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	2 cut(s)	273, 369
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	75, 102, 240, 292, 388
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	2 cut(s)	152, 246
AluI	AGCT	2 cut(s)	152, 246
Alw26I	GTCTC	2 cut(s)	331, 427
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	3 cut(s)	146, 149, 232
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	2 cut(s)	287, 383
BbvI	GCAGC	3 cut(s)	158, 161, 219
BciT130I	CCWGG	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	331, 427
BisI	GCNGC	3 cut(s)	147, 150, 233
BlsI	GCNGC	3 cut(s)	148, 151, 234
Bme1390I	CCNGG	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	2 cut(s)	323, 419
BpmI	CTGGAG	2 cut(s)	321, 417
BpuEI	CTTGAG	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	304, 400
BseBI	CCWGG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	304, 400
BseXI	GCAGC	3 cut(s)	158, 161, 219
BsgI	GTGCAG	2 cut(s)	165, 288
BshFI	GGCC	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	331, 427
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	497
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	4 cut(s)	89, 216, 337, 433
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	258
BspPI	GGATC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	304, 400
BssMI	GATC	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	6, 18
BstDEI	CTNAG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	2 cut(s)	331, 427
BstMBI	GATC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 416
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	2 cut(s)	20, 126
BstSCI	CCNGG	1 cut(s)	492
BstV1I	GCAGC	3 cut(s)	158, 161, 219
BsuRI	GGCC	1 cut(s)	497
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	3 cut(s)	59, 297, 393
Cac8I	GCNNGC	2 cut(s)	6, 18
CciI	TCATGA	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	272, 368
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	4 cut(s)	17, 123, 132, 259
CviJI	RGCY	8 cut(s)	8, 32, 70, 152, 189, 246, 472, 497
CviKI_1	RGCY	8 cut(s)	8, 32, 70, 152, 189, 246, 472, 497
CviQI	GTAC	2 cut(s)	272, 368
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	492
EcoT22I	ATGCAT	1 cut(s)	137
FaeI	CATG	4 cut(s)	20, 126, 135, 262
FaiI	YATR	9 cut(s)	18, 117, 124, 133, 137, 186, 260, 477, 500
FatI	CATG	4 cut(s)	16, 122, 131, 258
Fnu4HI	GCNGC	3 cut(s)	147, 150, 233
Fsp4HI	GCNGC	3 cut(s)	147, 150, 233
GluI	GCNGC	3 cut(s)	147, 150, 233
GsuI	CTGGAG	2 cut(s)	321, 417
HaeIII	GGCC	1 cut(s)	497
Hin1II	CATG	4 cut(s)	20, 126, 135, 262
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	4 cut(s)	250, 319, 415, 486
Hpy188III	TCNNGA	2 cut(s)	47, 259
Hpy8I	GTNNAC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	8 cut(s)	4, 20, 135, 146, 235, 269, 297, 393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 416
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	20, 126, 135, 262
Kzo9I	GATC	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	5 cut(s)	263, 285, 359, 381, 479
Lsp1109I	GCAGC	3 cut(s)	158, 161, 219
LweI	GCATC	2 cut(s)	323, 419
MaeIII	GTNAC	2 cut(s)	107, 118
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	1 cut(s)	35
MfeI	CAATTG	1 cut(s)	159
MluCI	AATT	4 cut(s)	159, 203, 340, 436
MnlI	CCTC	7 cut(s)	60, 122, 244, 296, 392, 483, 492
Mph1103I	ATGCAT	1 cut(s)	137
MroXI	GAANNNNTTC	2 cut(s)	287, 383
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	320, 416
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	4 cut(s)	20, 126, 135, 262
NsiI	ATGCAT	1 cut(s)	137
NspI	RCATGY	2 cut(s)	20, 126
PaeI	GCATGC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	258
PciI	ACATGT	1 cut(s)	122
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	2 cut(s)	287, 383
PkrI	GCNGC	3 cut(s)	148, 151, 234
PscI	ACATGT	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
RsaI	GTAC	2 cut(s)	273, 369
RsaNI	GTAC	2 cut(s)	272, 368
SatI	GCNGC	3 cut(s)	147, 150, 233
Sau3AI	GATC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	494
SetI	ASST	6 cut(s)	114, 154, 248, 289, 385, 484
SfaNI	GCATC	2 cut(s)	323, 419
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SphI	GCATGC	1 cut(s)	20
Sse9I	AATT	4 cut(s)	159, 203, 340, 436
SsiI	CCGC	4 cut(s)	89, 216, 337, 433
StyD4I	CCNGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	228
TasI	AATT	4 cut(s)	159, 203, 340, 436
TscAI	CASTG	3 cut(s)	59, 304, 400
TseI	GCWGC	3 cut(s)	146, 149, 232
TspRI	CASTG	3 cut(s)	59, 304, 400
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	2 cut(s)	20, 126
XmnI	GAANNNNTTC	2 cut(s)	287, 383
Zsp2I	ATGCAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.