Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004325

Physical Location & Seq

Genomic Coordinates Forward (+)

13373144 .. 13376807

Gene Structure 3664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG087600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGACATCACTTGGAGAAGACAACCCCAACGATGATACCCTTATGTTTATGGATCTTGCTTTAGAACAGGCAAAGCTAGCTTTGGACAGCCTTGAAGTTCCTGTCGGCTGTGTGATTGTTGAAGATGGAAAGGTTATAGCATCGGGAAGGAATCGGACTAACGAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCCATTGATACTCTTCTTGAGCAGTGGAGAGAAAAGAGGCTTTCAACTTCAGAAGTTGCGGAAATCTTTTCAAAATGTAACCTTTATGTTACATGTGAACCATGCATAATGTGTGCAGCAGCTTTATCAATTGTTGGTATCAAGGAAGTATTTTATGGCTGTGCCAATGACAAATTTGGTGGGTGCGGATCAATACTGTCGCTGCATTCAAGTAGCTCTGAGGCACTCATGAGTGGTGGAGTACCACAGGGGAAAGGTTTCAAATGCACTGGAGGGATAATGGCATCAGAAGCAGTCTCTCTTTTCCGCAATTTTTACGAGCAAGGAAACCCTAATGCTCCAAAGCCTCATAGACCTCTGACTCACCAGGCCATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0052717 GO:0052718 GO:0071704 GO:0090304 GO:1901360 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

192

Amino Acids

20.76

Weight (kDa)

5.12

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	15 - 120	6.7e-24	Cytidine and deoxycytidylate deaminase zinc-binding region
MafB19-deam	PF14437	15 - 129	7.9e-18	MafB19-like deaminase
Bd3614-deam	PF14439	38 - 112	8.7e-07	Bd3614-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175
fragaria_vesca	FvH4_4g07280 FvH4_5g15360 FvH4_5g15360
malus_domestica	MD13G1241600.v1.1
prunus_persica	Prupe.1G075100_v2.0.a1
pyrus_communis	pycom13g21350
rosa_chinensis	RchiOBHm_Chr4g0399541 RchiOBHm_Chr4g0399571 RchiOBHm_Chr7g0180711
rosa_laevigata	RLG00000005238 RLG00000009262
rosa_multiflora	Rmu_sc0002285.1_g000033
rosa_roxburghii	Rroxscaffold_3G00272630 Rroxscaffold_5G00344420
rosa_rugosa	Rorug04G0017400 Rorug06G0435100
rosa_samantha	Rh4AG095200 Rh4BG092600 Rh4CG103700 Rh4DG087600 Rh7AG036800 Rh7BG036600 Rh7CG038300 Rh7DG036800
rosa_wichuraiana	Rw4G007830 Rw7G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	257, 384, 505
AclWI	GGATC	2 cut(s)	60, 394
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	441
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	6 cut(s)	95, 122, 243, 270, 408, 460
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	4 cut(s)	76, 80, 320, 414
AluI	AGCT	4 cut(s)	76, 80, 320, 414
Alw26I	GTCTC	2 cut(s)	158, 499
AlwI	GGATC	2 cut(s)	60, 394
AoxI	GGCC	1 cut(s)	567
ApeKI	GCWGC	3 cut(s)	314, 317, 400
ApoI	RAATTY	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	554
AsuNHI	GCTAGC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	326, 329, 387
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	566
BcoDI	GTCTC	2 cut(s)	158, 499
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	3 cut(s)	315, 318, 401
BlsI	GCNGC	3 cut(s)	316, 319, 402
Bme1390I	CCNGG	1 cut(s)	566
BmrFI	CCNGG	1 cut(s)	566
BmsI	GCATC	2 cut(s)	149, 491
BmtI	GCTAGC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	566
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	326, 329, 387
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	569
BsmAI	GTCTC	2 cut(s)	158, 499
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	569
Bsp143I	GATC	2 cut(s)	52, 386
BspACI	CCGC	3 cut(s)	257, 384, 505
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	1 cut(s)	409
BspHI	TCATGA	1 cut(s)	426
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	60, 394
BsrI	ACTGG	1 cut(s)	472
BssMI	GATC	2 cut(s)	52, 386
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	78, 186
BstDEI	CTNAG	1 cut(s)	417
BstKTI	GATC	2 cut(s)	55, 389
BstMAI	GTCTC	2 cut(s)	158, 499
BstMBI	GATC	2 cut(s)	52, 386
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 488
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	2 cut(s)	188, 294
BstSCI	CCNGG	1 cut(s)	564
BstV1I	GCAGC	3 cut(s)	326, 329, 387
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	569
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	227, 465
Cac8I	GCNNGC	2 cut(s)	78, 186
CciI	TCATGA	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	440
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	4 cut(s)	185, 291, 300, 427
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	54, 388
DpnII	GATC	2 cut(s)	52, 386
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	305
FaeI	CATG	4 cut(s)	188, 294, 303, 430
FatI	CATG	4 cut(s)	184, 290, 299, 426
Fnu4HI	GCNGC	3 cut(s)	315, 318, 401
Fsp4HI	GCNGC	3 cut(s)	315, 318, 401
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	3 cut(s)	315, 318, 401
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	569
Hin1II	CATG	4 cut(s)	188, 294, 303, 430
HinfI	GANTC	2 cut(s)	151, 559
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	5 cut(s)	156, 250, 418, 487, 558
Hpy188III	TCNNGA	3 cut(s)	144, 215, 427
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4V	TGCA	5 cut(s)	188, 303, 314, 403, 465
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 488
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	4 cut(s)	188, 294, 303, 430
Kzo9I	GATC	2 cut(s)	52, 386
LmnI	GCTCC	1 cut(s)	541
LpnPI	CCDG	5 cut(s)	53, 114, 431, 453, 551
Lsp1109I	GCAGC	3 cut(s)	326, 329, 387
LweI	GCATC	2 cut(s)	149, 491
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	275, 286
MalI	GATC	2 cut(s)	54, 388
MboI	GATC	2 cut(s)	52, 386
MboII	GAAGA	3 cut(s)	29, 134, 203
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	3 cut(s)	327, 371, 508
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	5 cut(s)	228, 412, 464, 555, 564
Mph1103I	ATGCAT	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	566
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	77, 488
NdeII	GATC	2 cut(s)	52, 386
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	4 cut(s)	188, 294, 303, 430
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	2 cut(s)	188, 294
PaeI	GCATGC	1 cut(s)	188
PagI	TCATGA	1 cut(s)	426
PciI	ACATGT	1 cut(s)	290
PctI	GAATGC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	316, 319, 402
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PscI	ACATGT	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
SatI	GCNGC	3 cut(s)	315, 318, 401
Sau3AI	GATC	2 cut(s)	52, 386
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	566
SetI	ASST	8 cut(s)	78, 82, 135, 282, 322, 416, 457, 556
SfaNI	GCATC	2 cut(s)	149, 491
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	3 cut(s)	327, 371, 508
SsiI	CCGC	3 cut(s)	257, 384, 505
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	396
TasI	AATT	3 cut(s)	327, 371, 508
TfiI	GAWTC	1 cut(s)	151
TscAI	CASTG	2 cut(s)	227, 472
TseI	GCWGC	3 cut(s)	314, 317, 400
TspRI	CASTG	2 cut(s)	227, 472
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	2 cut(s)	188, 294
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.