Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004325

Physical Location & Seq

Genomic Coordinates Reverse (-)

2365651 .. 2367852

Gene Structure 2202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG036600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCATCTCCTGAAGAAGAGAACCCTAATGATGATACCCTTAAATTTATGGAACTTGCTATAGAACAGGCAAAGCTTGCTTTGGACAGCCTTGAAGTTCCTGTTGGCTGTGTGATTGTTGAAGATGGAAAGGTCATAGCGTGTGGAAGGAATCGAACTACTGAGACACGAAATGCCACGAGGCACGCAGAGATGGAAGCCATTGATACTCTTCTTAAGCAGTGGAGAGAAAAAAGGCTTTCAACGTCAGAAGTTGCTGAAATTTTTTCAAAATGTAACCTCTATGTTACATGTGAACCATGCATAATGTGTGCAGCAGCTTTATCAATTGTTGGTATCAAGGAAGTATTTTATGGCTGTGCTAATGATAAATTTGGTGGGTGTGGATCAATACTGTCATTGCATTCAAGCAGCTCTGAGCCACTCATGAGGTCCATATCTGAACTTAACACCATAAGCAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0052717 GO:0052718 GO:0071704 GO:0090304 GO:1901360 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

155

Amino Acids

16.98

Weight (kDa)

4.91

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MafB19-deam	PF14437	12 - 131	3.4e-18	MafB19-like deaminase
dCMP_cyt_deam_1	PF00383	14 - 120	7.3e-24	Cytidine and deoxycytidylate deaminase zinc-binding region
Bd3614-deam	PF14439	38 - 112	3.3e-07	Bd3614-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175
fragaria_vesca	FvH4_4g07280 FvH4_5g15360 FvH4_5g15360
malus_domestica	MD13G1241600.v1.1
prunus_persica	Prupe.1G075100_v2.0.a1
pyrus_communis	pycom13g21350
rosa_chinensis	RchiOBHm_Chr4g0399541 RchiOBHm_Chr4g0399571 RchiOBHm_Chr7g0180711
rosa_laevigata	RLG00000005238 RLG00000009262
rosa_multiflora	Rmu_sc0002285.1_g000033
rosa_roxburghii	Rroxscaffold_3G00272630 Rroxscaffold_5G00344420
rosa_rugosa	Rorug04G0017400 Rorug06G0435100
rosa_samantha	Rh4AG095200 Rh4BG092600 Rh4CG103700 Rh4DG087600 Rh7AG036800 Rh7BG036600 Rh7CG038300 Rh7DG036800
rosa_wichuraiana	Rw4G007830 Rw7G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	3 cut(s)	44, 261, 371
AcuI	CTGAAG	1 cut(s)	33
AflII	CTTAAG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	5 cut(s)	95, 122, 243, 270, 408
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	3 cut(s)	76, 320, 414
AluI	AGCT	3 cut(s)	76, 320, 414
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	394
ApeKI	GCWGC	3 cut(s)	314, 317, 411
ApoI	RAATTY	3 cut(s)	44, 261, 371
AspS9I	GGNCC	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	432
BauI	CACGAG	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	326, 329, 423
BccI	CCATC	2 cut(s)	119, 187
BcoDI	GTCTC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	3 cut(s)	315, 318, 412
BlsI	GCNGC	3 cut(s)	316, 319, 413
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	432
BmsI	GCATC	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	398
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	153, 408
BseXI	GCAGC	3 cut(s)	326, 329, 423
BsgI	GTGCAG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	403
Bsp143I	GATC	1 cut(s)	386
BspCNI	CTCAG	2 cut(s)	154, 409
BspHI	TCATGA	1 cut(s)	426
BspPI	GGATC	1 cut(s)	394
BspTI	CTTAAG	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	398
BssMI	GATC	1 cut(s)	386
BssSI	CACGAG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	12, 216
BstAFI	CTTAAG	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	78, 186
BstDEI	CTNAG	2 cut(s)	162, 417
BstKTI	GATC	1 cut(s)	389
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	326, 329, 423
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	78, 186
CciI	TCATGA	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	432
CviAII	CATG	3 cut(s)	291, 300, 427
CviJI	RGCY	9 cut(s)	76, 90, 108, 200, 238, 320, 357, 414, 421
CviKI_1	RGCY	9 cut(s)	76, 90, 108, 200, 238, 320, 357, 414, 421
DdeI	CTNAG	2 cut(s)	162, 417
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
Eam1104I	CTCTTC	2 cut(s)	12, 216
EarI	CTCTTC	2 cut(s)	12, 216
Eco47I	GGWCC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	305
FaeI	CATG	3 cut(s)	294, 303, 430
FatI	CATG	3 cut(s)	290, 299, 426
Fnu4HI	GCNGC	3 cut(s)	315, 318, 412
Fsp4HI	GCNGC	3 cut(s)	315, 318, 412
GluI	GCNGC	3 cut(s)	315, 318, 412
Hin1II	CATG	3 cut(s)	294, 303, 430
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	3 cut(s)	250, 418, 442
Hpy188III	TCNNGA	2 cut(s)	11, 427
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	3 cut(s)	303, 314, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	162, 417
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	3 cut(s)	294, 303, 430
Kzo9I	GATC	1 cut(s)	386
LpnPI	CCDG	3 cut(s)	24, 53, 114
Lsp1109I	GCAGC	3 cut(s)	326, 329, 423
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	275, 286
MalI	GATC	1 cut(s)	388
MboI	GATC	1 cut(s)	386
MboII	GAAGA	4 cut(s)	26, 29, 134, 203
MfeI	CAATTG	1 cut(s)	327
MluCI	AATT	5 cut(s)	44, 261, 327, 371, 463
MnlI	CCTC	3 cut(s)	174, 290, 423
Mph1103I	ATGCAT	1 cut(s)	305
MseI	TTAA	3 cut(s)	42, 216, 447
MspCI	CTTAAG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	403
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	386
NlaIII	CATG	3 cut(s)	294, 303, 430
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	1 cut(s)	294
PagI	TCATGA	1 cut(s)	426
PciI	ACATGT	1 cut(s)	290
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	316, 319, 413
PscI	ACATGT	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	42, 216, 447
SatI	GCNGC	3 cut(s)	315, 318, 412
Sau3AI	GATC	1 cut(s)	386
Sau96I	GGNCC	1 cut(s)	432
SetI	ASST	7 cut(s)	78, 135, 248, 282, 322, 416, 434
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	44, 261, 327, 371, 463
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	154
TasI	AATT	5 cut(s)	44, 261, 327, 371, 463
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	3 cut(s)	42, 216, 447
Tru9I	TTAA	3 cut(s)	42, 216, 447
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	3 cut(s)	314, 317, 411
TspRI	CASTG	1 cut(s)	227
Vha464I	CTTAAG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	432
XapI	RAATTY	3 cut(s)	44, 261, 371
XceI	RCATGY	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.