Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004325

Physical Location & Seq

Genomic Coordinates Forward (+)

16857634 .. 16861747

Gene Structure 4114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37168

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTGCATTGCCTCTCTTTACTTTATTCTGCTTGATATGTATCCTTTTTTTTTTTTTTCCTTTTCTTATTCTGGCGCAAAGCTAGCTTTGGACAGCCTTGAAGTTCCTGTCGGCTGTGTGATTGTTGAAGATGGAAAGGTTATAGCGTCTGGAAGGAATCGGACTAACGAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCCATTGATACTCTTCTTGAGCAGTGGAGAGAAAAGAGGCTTTCAACTTCAGAAGTTGCGGAAATCTTTTCAAAATGTAACCTCTATGTTACATGTGAACCATGCATAATGTGTGCAGCAGCTTTATCAATTGTTGGTATCGAGGAAGTATTTTATGGCTGTGCCAATGACAAATTTGGTGGGTGTGGATCAATACTGTCGCTGCATTCAAGTAGCTCTGAGGCACTCATGAGTGGTGGAGTACCACAGGGGAAAGGTTTCAAATGCACTGGAGGGATAATGGCATCAGAAGCAGTCTCTCTTTTCCGCAATTTTTACGAGCAAGGAAACCCTAATGCTCCAAAGCCTCATAGACCTCTGACTCACCAGGCCATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0052717 GO:0052718 GO:0071704 GO:0090304 GO:1901360 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

194

Amino Acids

21.17

Weight (kDa)

5.58

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MafB19-deam	PF14437	19 - 131	4.6e-16	MafB19-like deaminase
dCMP_cyt_deam_1	PF00383	26 - 122	4.2e-21	Cytidine and deoxycytidylate deaminase zinc-binding region
Bd3614-deam	PF14439	40 - 113	1e-06	Bd3614-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175
fragaria_vesca	FvH4_4g07280 FvH4_5g15360 FvH4_5g15360
malus_domestica	MD13G1241600.v1.1
prunus_persica	Prupe.1G075100_v2.0.a1
pyrus_communis	pycom13g21350
rosa_chinensis	RchiOBHm_Chr4g0399541 RchiOBHm_Chr4g0399571 RchiOBHm_Chr7g0180711
rosa_laevigata	RLG00000005238 RLG00000009262
rosa_multiflora	Rmu_sc0002285.1_g000033
rosa_roxburghii	Rroxscaffold_3G00272630 Rroxscaffold_5G00344420
rosa_rugosa	Rorug04G0017400 Rorug06G0435100
rosa_samantha	Rh4AG095200 Rh4BG092600 Rh4CG103700 Rh4DG087600 Rh7AG036800 Rh7BG036600 Rh7CG038300 Rh7DG036800
rosa_wichuraiana	Rw4G007830 Rw7G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	263, 511
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	447
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	6 cut(s)	101, 128, 249, 276, 414, 466
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	4 cut(s)	82, 86, 326, 420
AluI	AGCT	4 cut(s)	82, 86, 326, 420
Alw26I	GTCTC	2 cut(s)	164, 505
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	1 cut(s)	573
ApeKI	GCWGC	3 cut(s)	320, 323, 406
ApoI	RAATTY	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	560
AsuNHI	GCTAGC	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	332, 335, 393
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	572
BciVI	GTATCC	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	164, 505
BfaI	CTAG	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	3 cut(s)	321, 324, 407
BlsI	GCNGC	3 cut(s)	322, 325, 408
Bme1390I	CCNGG	1 cut(s)	572
BmrFI	CCNGG	1 cut(s)	572
BmsI	GCATC	1 cut(s)	497
BmtI	GCTAGC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	572
BseJI	GATNNNNATC	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	478
BseXI	GCAGC	3 cut(s)	332, 335, 393
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	575
BsmAI	GTCTC	2 cut(s)	164, 505
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	575
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	2 cut(s)	263, 511
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	432
BspOI	GCTAGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	478
BssMI	GATC	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	84, 192
BstDEI	CTNAG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	1 cut(s)	395
BstMAI	GTCTC	2 cut(s)	164, 505
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 494
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	2 cut(s)	194, 300
BstSCI	CCNGG	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	332, 335, 393
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	575
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	233, 471
Cac8I	GCNNGC	2 cut(s)	84, 192
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	1 cut(s)	77
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	446
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviAII	CATG	4 cut(s)	191, 297, 306, 433
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	570
EcoT22I	ATGCAT	1 cut(s)	311
FaeI	CATG	4 cut(s)	194, 300, 309, 436
FatI	CATG	4 cut(s)	190, 296, 305, 432
Fnu4HI	GCNGC	3 cut(s)	321, 324, 407
Fsp4HI	GCNGC	3 cut(s)	321, 324, 407
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	3 cut(s)	321, 324, 407
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	575
HgaI	GACGC	1 cut(s)	135
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	194, 300, 309, 436
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	2 cut(s)	157, 565
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	5 cut(s)	162, 256, 424, 493, 564
Hpy188III	TCNNGA	3 cut(s)	150, 221, 433
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4V	TGCA	6 cut(s)	6, 194, 309, 320, 409, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 494
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	4 cut(s)	194, 300, 309, 436
HspAI	GCGC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	547
LpnPI	CCDG	6 cut(s)	57, 120, 135, 437, 459, 557
Lsp1109I	GCAGC	3 cut(s)	332, 335, 393
LweI	GCATC	1 cut(s)	497
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	281, 292
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	2 cut(s)	140, 209
MfeI	CAATTG	1 cut(s)	333
MluCI	AATT	3 cut(s)	333, 377, 514
MlyI	GAGTC	1 cut(s)	559
MnlI	CCTC	8 cut(s)	22, 234, 296, 340, 418, 470, 561, 570
Mph1103I	ATGCAT	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	572
MunI	CAATTG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	2 cut(s)	83, 494
NdeII	GATC	1 cut(s)	392
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	4 cut(s)	194, 300, 309, 436
NsiI	ATGCAT	1 cut(s)	311
NspI	RCATGY	2 cut(s)	194, 300
PaeI	GCATGC	1 cut(s)	194
PagI	TCATGA	1 cut(s)	432
PciI	ACATGT	1 cut(s)	296
PctI	GAATGC	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	322, 325, 408
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PscI	ACATGT	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SatI	GCNGC	3 cut(s)	321, 324, 407
Sau3AI	GATC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	572
SetI	ASST	8 cut(s)	84, 88, 141, 288, 328, 422, 463, 562
SfaNI	GCATC	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	3 cut(s)	333, 377, 514
SsiI	CCGC	2 cut(s)	263, 511
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	570
TaaI	ACNGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	345
TasI	AATT	3 cut(s)	333, 377, 514
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	2 cut(s)	233, 478
TseI	GCWGC	3 cut(s)	320, 323, 406
TspRI	CASTG	2 cut(s)	233, 478
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	2 cut(s)	194, 300
XmnI	GAANNNNTTC	1 cut(s)	461
XspI	CTAG	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.