AT1G48460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009433
Physical Location & Seq
Forward (+)
17910779 .. 17913344
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48460.2

Sequence Viewer

Length: 1023 bp
ATGGAATCGAAAGCAATTTGCTTAGGGTTTCTTCCTCCAAGACTTCGATTTTCATCTCCACGTTTACTCTCTCTTCCTCCTTCTCCTCCTGCTTCTTCCACATTTGCGACGCGTCACAAACTTGATTCCAGACAAACCCTCCTTTGGAACAAACCGCAATTGAGCCGAGTTCGTGTAGCGTGTTCTTCTTCTCAATCTGACTCAAGACCTGAGAAGAAGCAATCGGATAAGAGTAACTATGCTCGAGCTGAGCTGTTCCGTGGGAAATCAGGTTCTGTTTCTTTCAATGGTCTGACTCATCAGCTGGTTGAAGAAAGTAAACTGGTTTCAGCTCCGTTTCAAGAAGAGAAAGGTTCTTTCTTGTGGGTTTTGGCTCCTGTTGTTTTGATTTCTTCGTTGATTCTTCCTCAGTTCTTTCTAAGTGGTATCATTGAAGCTACCTTCAAAAACGACACTGTTGCTGAAATTGTTACTTCTTTTTGCTTTGAGACGGTGTTTTATGCTGGTCTTGCGATATTCCTGTCTGTGACTGACCGAGTGCAGAGGCCGTACTTAGACTTCAGCTCCAAGAGATGGGGTCTGATCACTGGACTGAGGGGATACCTTACGTCTGCATTCCTCACGATGGGTTTAAAAGTTGTAGTTCCCGTATTTGCTGTTTACATGACTTGGCCAGCTCTTGGAATAGATGCTTTGATTGCAGTGCTTCCTTTCTTGGTTGGCTGTGCAGTTCAAAGAGTTTTCGAGGCTCGGCTTGAAAGACGTGGCTCATCCTGTTGGCCCATTGTTCCAATAGTCTTTGAGGTGTATAGGCTGTATCAGGTGACAAGAGCAGCGACTTTTGTTCAGAGGCTGATGTTTATGATGAAAGATGCGGCAACGACTGCTGAAATAACAGAGCGAGGAGTTGCACTAGTTGGTTTGGTTGTGACTTTGCAGTTTCTAGCTGTTATGTGTCTCTGGTCGTTTATCACTTTTCTTATGCGCCTCTTTCCTTCTAGACCTGTAGGTGAAAACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

38.07

Weight (kDa)

9.69

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 573, 680
AccII CGCG 1 cut(s) 112
AciI CCGC 2 cut(s) 155, 875
AcoI YGGCCR 1 cut(s) 671
AcuI CTGAAG 1 cut(s) 544
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 4 cut(s) 144, 573, 625, 680
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 7 cut(s) 286, 311, 341, 434, 445, 734, 758
AhlI ACTAGT 1 cut(s) 913
AjiI CACGTC 1 cut(s) 764
AloI GAACNNNNNNTCC 2 cut(s) 256, 288
AluBI AGCT 8 cut(s) 248, 253, 304, 332, 437, 564, 677, 947
AluI AGCT 8 cut(s) 248, 253, 304, 332, 437, 564, 677, 947
Alw26I GTCTC 2 cut(s) 482, 962
AlwNI CAGNNNCTG 2 cut(s) 275, 853
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 3 cut(s) 545, 671, 779
ApeKI GCWGC 1 cut(s) 833
AspLEI GCGC 1 cut(s) 987
AspS9I GGNCC 1 cut(s) 780
AsuHPI GGTGA 2 cut(s) 835, 1022
AvaI CYCGRG 1 cut(s) 243
BalI TGGCCA 1 cut(s) 673
BarI GAAGNNNNNNTAC 2 cut(s) 542, 574
BbvI GCAGC 1 cut(s) 845
BccI CCATC 2 cut(s) 567, 619
BceAI ACGGC 1 cut(s) 532
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BciVI GTATCC 1 cut(s) 593
BclI TGATCA 1 cut(s) 582
BcoDI GTCTC 2 cut(s) 482, 962
BcuI ACTAGT 1 cut(s) 913
BfaI CTAG 4 cut(s) 914, 944, 999, 1021
BfmI CTRYAG 1 cut(s) 1005
BfuI GTATCC 1 cut(s) 593
BisI GCNGC 2 cut(s) 834, 876
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 2 cut(s) 835, 877
BmeT110I CYCGRG 1 cut(s) 243
BmgBI CACGTC 1 cut(s) 764
BmgT120I GGNCC 1 cut(s) 780
BmiI GGNNCC 1 cut(s) 375
BmsI GCATC 2 cut(s) 679, 862
Bpu10I CCTNAGC 1 cut(s) 22
Bpu1102I GCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 548, 578
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 573, 625, 680
Bse1I ACTGG 2 cut(s) 327, 592
Bse8I GATNNNNATC 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 770
BseJI GATNNNNATC 1 cut(s) 52
BseLI CCNNNNNNNGG 4 cut(s) 144, 573, 625, 680
BseMII CTCAG 4 cut(s) 201, 240, 422, 584
BseNI ACTGG 2 cut(s) 327, 592
BseRI GAGGAG 2 cut(s) 75, 918
BseXI GCAGC 1 cut(s) 845
BsgI GTGCAG 2 cut(s) 560, 747
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 3 cut(s) 547, 673, 781
BsiHKCI CYCGRG 1 cut(s) 243
BslI CCNNNNNNNGG 4 cut(s) 144, 573, 625, 680
BsmAI GTCTC 2 cut(s) 482, 962
BsmBI CGTCTC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 614
BsnI GGCC 3 cut(s) 547, 673, 781
BsoBI CYCGRG 1 cut(s) 243
Bsp143I GATC 1 cut(s) 582
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 2 cut(s) 155, 875
BspANI GGCC 3 cut(s) 547, 673, 781
BspCNI CTCAG 4 cut(s) 202, 241, 421, 585
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 375
BsrI ACTGG 2 cut(s) 327, 592
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 582
Bst4CI ACNGT 2 cut(s) 457, 493
Bst6I CTCTTC 2 cut(s) 78, 339
BstAPI GCANNNNNTGC 1 cut(s) 884
BstC8I GCNNGC 1 cut(s) 675
BstDEI CTNAG 7 cut(s) 22, 210, 249, 408, 419, 553, 593
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 770
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 987
BstKTI GATC 1 cut(s) 585
BstMAI GTCTC 2 cut(s) 482, 962
BstMBI GATC 1 cut(s) 582
BstMWI GCNNNNNNNGC 3 cut(s) 509, 698, 884
BstSFI CTRYAG 1 cut(s) 1005
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 845
BsuI GTATCC 1 cut(s) 593
BsuRI GGCC 3 cut(s) 547, 673, 781
BtgI CCRYGG 1 cut(s) 259
BtrI CACGTC 1 cut(s) 764
BtsCI GGATG 1 cut(s) 770
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 3 cut(s) 453, 585, 708
Cac8I GCNNGC 1 cut(s) 675
CaiI CAGNNNCTG 2 cut(s) 275, 853
CfoI GCGC 1 cut(s) 987
Cfr13I GGNCC 1 cut(s) 780
CseI GACGC 2 cut(s) 101, 118
Csp6I GTAC 1 cut(s) 550
CviAII CATG 1 cut(s) 664
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 7 cut(s) 22, 210, 249, 408, 419, 553, 593
DpnI GATC 1 cut(s) 584
DpnII GATC 1 cut(s) 582
DraI TTTAAA 1 cut(s) 633
EaeI YGGCCR 1 cut(s) 671
Eam1104I CTCTTC 2 cut(s) 78, 339
EarI CTCTTC 2 cut(s) 78, 339
Eco57I CTGAAG 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 1 cut(s) 667
FaiI YATR 7 cut(s) 240, 501, 665, 810, 863, 953, 983
FatI CATG 1 cut(s) 663
FbaI TGATCA 1 cut(s) 582
Fnu4HI GCNGC 2 cut(s) 834, 876
FokI GGATG 1 cut(s) 757
Fsp4HI GCNGC 2 cut(s) 834, 876
FspBI CTAG 4 cut(s) 914, 944, 999, 1021
GlaI GCGC 1 cut(s) 986
GluI GCNGC 2 cut(s) 834, 876
HaeIII GGCC 3 cut(s) 547, 673, 781
HgaI GACGC 2 cut(s) 101, 118
HhaI GCGC 1 cut(s) 987
Hin1II CATG 1 cut(s) 667
Hin6I GCGC 1 cut(s) 985
HinP1I GCGC 1 cut(s) 985
HinfI GANTC 5 cut(s) 5, 125, 200, 295, 400
HphI GGTGA 2 cut(s) 835, 1022
Hpy166II GTNNAC 3 cut(s) 65, 320, 661
Hpy188I TCNGA 5 cut(s) 199, 226, 294, 582, 849
Hpy188III TCNNGA 5 cut(s) 129, 204, 341, 622, 999
Hpy8I GTNNAC 3 cut(s) 65, 320, 661
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 90, 451, 1005
HpyCH4III ACNGT 2 cut(s) 457, 493
HpyCH4IV ACGT 3 cut(s) 61, 608, 763
HpyCH4V TGCA 6 cut(s) 541, 614, 701, 728, 911, 937
HpyF10VI GCNNNNNNNGC 3 cut(s) 509, 698, 884
HpyF3I CTNAG 7 cut(s) 22, 210, 249, 408, 419, 553, 593
HpySE526I ACGT 3 cut(s) 61, 608, 763
Hsp92II CATG 1 cut(s) 667
HspAI GCGC 1 cut(s) 985
Ksp22I TGATCA 1 cut(s) 582
Kzo9I GATC 1 cut(s) 582
LmnI GCTCC 3 cut(s) 337, 379, 569
Lsp1109I GCAGC 1 cut(s) 845
LweI GCATC 2 cut(s) 679, 862
MaeI CTAG 4 cut(s) 914, 944, 999, 1021
MaeII ACGT 3 cut(s) 61, 608, 763
MaeIII GTNAC 6 cut(s) 113, 233, 469, 526, 823, 928
MalI GATC 1 cut(s) 584
MboI GATC 1 cut(s) 582
MfeI CAATTG 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 673
MluCI AATT 3 cut(s) 15, 158, 465
MluI ACGCGT 1 cut(s) 110
MluNI TGGCCA 1 cut(s) 673
MlyI GAGTC 2 cut(s) 194, 289
Mox20I TGGCCA 1 cut(s) 673
MscI TGGCCA 1 cut(s) 673
MseI TTAA 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 673
MspA1I CMGCKG 1 cut(s) 304
MunI CAATTG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 614
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 3 cut(s) 509, 698, 884
NdeII GATC 1 cut(s) 582
NlaIII CATG 1 cut(s) 667
NlaIV GGNNCC 1 cut(s) 375
NmeAIII GCCGAG 2 cut(s) 191, 730
NmuCI GTSAC 4 cut(s) 113, 526, 823, 928
PaeR7I CTCGAG 1 cut(s) 243
PctI GAATGC 1 cut(s) 614
PfeI GAWTC 3 cut(s) 5, 125, 400
PflMI CCANNNNNTGG 2 cut(s) 573, 680
PkrI GCNGC 2 cut(s) 835, 877
PleI GAGTC 2 cut(s) 194, 289
PpsI GAGTC 2 cut(s) 194, 289
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 1 cut(s) 780
PspXI VCTCGAGB 1 cut(s) 243
PstNI CAGNNNCTG 2 cut(s) 275, 853
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 2 cut(s) 834, 876
Sau3AI GATC 1 cut(s) 582
Sau96I GGNCC 1 cut(s) 780
SchI GAGTC 2 cut(s) 194, 289
SfaNI GCATC 2 cut(s) 679, 862
SfcI CTRYAG 1 cut(s) 1005
Sfr274I CTCGAG 1 cut(s) 243
SlaI CTCGAG 1 cut(s) 243
SmlI CTYRAG 2 cut(s) 202, 243
SmoI CTYRAG 2 cut(s) 202, 243
SpeI ACTAGT 1 cut(s) 913
Sse9I AATT 3 cut(s) 15, 158, 465
SsiI CCGC 2 cut(s) 155, 875
SspMI CTAG 4 cut(s) 914, 944, 999, 1021
TaaI ACNGT 2 cut(s) 457, 493
TaiI ACGT 3 cut(s) 64, 611, 766
TaqI TCGA 4 cut(s) 8, 46, 244, 744
TaqII GACCGA 1 cut(s) 549
TasI AATT 3 cut(s) 15, 158, 465
TauI GCSGC 1 cut(s) 878
TfiI GAWTC 3 cut(s) 5, 125, 400
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TscAI CASTG 3 cut(s) 460, 592, 708
TseFI GTSAC 4 cut(s) 113, 526, 823, 928
TseI GCWGC 1 cut(s) 833
Tsp45I GTSAC 4 cut(s) 113, 526, 823, 928
TspDTI ATGAA 2 cut(s) 42, 881
TspGWI ACGGA 2 cut(s) 248, 324
TspRI CASTG 3 cut(s) 460, 592, 708
Van91I CCANNNNNTGG 2 cut(s) 573, 680
XbaI TCTAGA 1 cut(s) 998
XhoI CTCGAG 1 cut(s) 243
XspI CTAG 4 cut(s) 914, 944, 999, 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.