Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009433

Physical Location & Seq

Genomic Coordinates Reverse (-)

28859596 .. 28862002

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40500.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGCTGCAATCAGTTTGTCTTGGGATTCCCAACTCAAATTTCGCTTTATCCAATAACCGTATAGTCCCTCACCAAACAGTTGCAGCAAGTTACGGTGGGCGGCTTCGTACTAGAATTGCTTCCAAATCTTATTTGGTGCCAGGATTGAACATGTCTGTGAAGAAGTCCTCAATGATTTGCTTGAACAAAGGAGCTATTGTGTGTGCTTCTAACCATAGTATTGATGGGAAGTTGGATTTCTCAAGAGAGAAAGATTCTAAGGTGCCTAGTAAGGCAAGTGATGGGGTGGAGCCTTTTCGTGGAAAGTCGGGTTCGATTTCCTTTTGTGGCTTGACACACCAGTTAGTAGAGGAAGGGAAACTGCTTTCAGCTCCGTTTGATGAAGAGAAGGGGTCGTTTCTTTGGTTTTTAGCCCCTGTCGCGTTGATTGCGTCATTTATTTTTCCGCAGTTCTTCATTGGTAATGCCATTGAAGCTTACTTGCAGAATGAGGTTCTCGTAGAAATCACAACTTCATTAGCTTCAGAGGCTGCATTTTATGTGGGACTTGCAACATTTTTAATTGTCACTGATCATGTTCAGAGGCCCTATCTACAGTTCAGTACAAAGAGATGGGGTCTCATTACTGGCCTAAGAGGATACTTGACATCTGCTTTCTTCACATCAGGCTTCAAGGCGGTTGCACCCCTGGTTGCTGTTTATGTAACCTGGCCGGTGCTTGGCTTGCCAGCCTTGGTTTCTGTTGCTCCCTTTCTAGTAGGTTGTGCTGCTCAGCTTGCATTTGAGTGGGTTCTTGACAAGCGTGGATCATCTTGTTGGCCACTAATTCCTATTATCTTTGAGGTTTACAGACTATATCAGTTGACAAAAGCTGATTACTTCATCAAGAAATTGATGTATTCAATGAACGGTCTGCCTACATCCCCAGAACTTCTAGAGAAAAGTGGTGGATTATTTGCGATGGAGGTCACAGTCGGAACCCTTTCTGTGGTGTGCCTGTGGTCTCTGGTGACATTTCTCATGAGGCTTTTTCCTTCGAGACCTGTAGCAGAGAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

38.88

Weight (kDa)

8.97

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48460 AT1G48460
fragaria_vesca	FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500
malus_domestica	MD00G1038500.v1.1
prunus_persica	Prupe.1G386100_v2.0.a1
pyrus_communis	pycom15g02990
rosa_chinensis	RchiOBHm_Chr6g0300231
rosa_laevigata	RLG00000011355
rosa_multiflora	Rmu_sc0001670.1_g000030
rosa_roxburghii	Rroxscaffold_7G00167990
rosa_rugosa	Rorug06G0294300 Rorug06G0294400
rosa_samantha	Rh6AG406500 Rh6BG414400 Rh6CG421600 Rh6DG407200
rosa_wichuraiana	Rw6G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	139, 265
AccII	CGCG	1 cut(s)	425
AciI	CCGC	3 cut(s)	103, 449, 680
AclWI	GGATC	1 cut(s)	817
AcoI	YGGCCR	2 cut(s)	713, 821
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	3 cut(s)	112, 607, 1061
AfiI	CCNNNNNNNGG	3 cut(s)	302, 722, 991
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	5 cut(s)	151, 187, 476, 676, 906
AjnI	CCWGG	3 cut(s)	142, 690, 710
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	7 cut(s)	7, 197, 374, 479, 524, 778, 875
AluI	AGCT	7 cut(s)	7, 197, 374, 479, 524, 778, 875
Alw26I	GTCTC	3 cut(s)	626, 1011, 1036
AlwI	GGATC	1 cut(s)	817
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	4 cut(s)	587, 631, 713, 821
ApeKI	GCWGC	4 cut(s)	7, 86, 533, 770
ApoI	RAATTY	1 cut(s)	40
Asp700I	GAANNNNTTC	2 cut(s)	121, 985
AspS9I	GGNCC	1 cut(s)	588
AsuHPI	GGTGA	2 cut(s)	65, 1024
BalI	TGGCCA	1 cut(s)	823
BanI	GGYRCC	2 cut(s)	139, 265
BbvI	GCAGC	3 cut(s)	98, 520, 757
BccI	CCATC	4 cut(s)	221, 278, 609, 958
BciT130I	CCWGG	3 cut(s)	144, 692, 712
BciVI	GTATCC	1 cut(s)	635
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	3 cut(s)	626, 1011, 1036
BfaI	CTAG	4 cut(s)	114, 270, 758, 938
BfmI	CTRYAG	2 cut(s)	596, 1047
BfuI	GTATCC	1 cut(s)	635
BisI	GCNGC	5 cut(s)	8, 87, 104, 534, 771
BlpI	GCTNAGC	1 cut(s)	774
BlsI	GCNGC	5 cut(s)	9, 88, 105, 535, 772
BmcAI	AGTACT	1 cut(s)	1061
Bme1390I	CCNGG	3 cut(s)	144, 692, 712
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	4 cut(s)	141, 267, 294, 982
BmrFI	CCNGG	3 cut(s)	144, 692, 712
Bpu1102I	GCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	229
BsaI	GGTCTC	3 cut(s)	626, 1011, 1036
BsaJI	CCNNGG	2 cut(s)	690, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 722, 991
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	2 cut(s)	343, 634
BseBI	CCWGG	3 cut(s)	144, 692, 712
BseDI	CCNNGG	2 cut(s)	690, 735
BseGI	GGATG	1 cut(s)	923
BseLI	CCNNNNNNNGG	3 cut(s)	302, 722, 991
BseMII	CTCAG	1 cut(s)	788
BseNI	ACTGG	2 cut(s)	343, 634
BseXI	GCAGC	3 cut(s)	98, 520, 757
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	4 cut(s)	589, 633, 715, 823
BshNI	GGYRCC	2 cut(s)	139, 265
BsiSI	CCGG	1 cut(s)	716
BslFI	GGGAC	2 cut(s)	53, 561
BslI	CCNNNNNNNGG	3 cut(s)	302, 722, 991
BsmAI	GTCTC	3 cut(s)	626, 1011, 1036
BsmFI	GGGAC	2 cut(s)	53, 561
BsnI	GGCC	4 cut(s)	589, 633, 715, 823
Bso31I	GGTCTC	3 cut(s)	626, 1011, 1036
Bsp143I	GATC	2 cut(s)	574, 809
Bsp1720I	GCTNAGC	1 cut(s)	774
BspACI	CCGC	3 cut(s)	103, 449, 680
BspANI	GGCC	4 cut(s)	589, 633, 715, 823
BspCNI	CTCAG	1 cut(s)	787
BspFNI	CGCG	1 cut(s)	425
BspHI	TCATGA	1 cut(s)	1023
BspLI	GGNNCC	4 cut(s)	141, 267, 294, 982
BspPI	GGATC	1 cut(s)	817
BspT107I	GGYRCC	2 cut(s)	139, 265
BspTNI	GGTCTC	3 cut(s)	626, 1011, 1036
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	2 cut(s)	343, 634
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	2 cut(s)	690, 735
BssMI	GATC	2 cut(s)	574, 809
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	3 cut(s)	144, 692, 712
Bst4CI	ACNGT	6 cut(s)	62, 82, 98, 600, 914, 976
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	3 cut(s)	728, 732, 780
BstDEI	CTNAG	3 cut(s)	261, 635, 774
BstF5I	GGATG	1 cut(s)	923
BstFNI	CGCG	1 cut(s)	425
BstKTI	GATC	2 cut(s)	577, 812
BstMAI	GTCTC	3 cut(s)	626, 1011, 1036
BstMBI	GATC	2 cut(s)	574, 809
BstMWI	GCNNNNNNNGC	6 cut(s)	422, 431, 476, 530, 727, 779
BstNI	CCWGG	3 cut(s)	144, 692, 712
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	3 cut(s)	142, 690, 710
BstSFI	CTRYAG	2 cut(s)	596, 1047
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	3 cut(s)	98, 520, 757
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	4 cut(s)	589, 633, 715, 823
BtgZI	GCGATG	1 cut(s)	977
BtsCI	GGATG	1 cut(s)	923
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	3 cut(s)	728, 732, 780
CaiI	CAGNNNCTG	1 cut(s)	533
CciI	TCATGA	1 cut(s)	1023
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	588
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	3 cut(s)	111, 606, 1060
CviAII	CATG	3 cut(s)	154, 578, 1024
CviQI	GTAC	3 cut(s)	111, 606, 1060
DdeI	CTNAG	3 cut(s)	261, 635, 774
DpnI	GATC	2 cut(s)	576, 811
DpnII	GATC	2 cut(s)	574, 809
EaeI	YGGCCR	2 cut(s)	713, 821
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	735
Eco31I	GGTCTC	3 cut(s)	626, 1011, 1036
Eco57I	CTGAAG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRII	CCWGG	3 cut(s)	142, 690, 710
EcoT14I	CCWWGG	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	3 cut(s)	157, 581, 1027
FaiI	YATR	8 cut(s)	65, 155, 219, 543, 579, 705, 859, 1025
FaqI	GGGAC	2 cut(s)	53, 561
FatI	CATG	3 cut(s)	153, 577, 1023
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	5 cut(s)	8, 87, 104, 534, 771
FokI	GGATG	1 cut(s)	910
Fsp4HI	GCNGC	5 cut(s)	8, 87, 104, 534, 771
FspBI	CTAG	4 cut(s)	114, 270, 758, 938
GluI	GCNGC	5 cut(s)	8, 87, 104, 534, 771
HaeIII	GGCC	4 cut(s)	589, 633, 715, 823
HapII	CCGG	1 cut(s)	716
HgaI	GACGC	1 cut(s)	423
Hin1II	CATG	3 cut(s)	157, 581, 1027
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	2 cut(s)	28, 257
HpaII	CCGG	1 cut(s)	716
HphI	GGTGA	2 cut(s)	65, 1024
Hpy166II	GTNNAC	2 cut(s)	850, 867
Hpy188I	TCNGA	3 cut(s)	529, 585, 980
Hpy188III	TCNNGA	6 cut(s)	246, 797, 889, 938, 1024, 1041
Hpy8I	GTNNAC	2 cut(s)	850, 867
HpyAV	CCTTC	3 cut(s)	350, 385, 1047
HpyCH4III	ACNGT	6 cut(s)	62, 82, 98, 600, 914, 976
HpyCH4V	TGCA	7 cut(s)	10, 86, 487, 536, 554, 686, 782
HpyF10VI	GCNNNNNNNGC	6 cut(s)	422, 431, 476, 530, 727, 779
HpyF3I	CTNAG	3 cut(s)	261, 635, 774
Hsp92II	CATG	3 cut(s)	157, 581, 1027
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	2 cut(s)	574, 809
LmnI	GCTCC	5 cut(s)	4, 194, 292, 379, 754
Lsp1109I	GCAGC	3 cut(s)	98, 520, 757
MaeI	CTAG	4 cut(s)	114, 270, 758, 938
MaeIII	GTNAC	5 cut(s)	92, 568, 706, 970, 1012
MalI	GATC	2 cut(s)	576, 811
MboI	GATC	2 cut(s)	574, 809
MboII	GAAGA	4 cut(s)	175, 398, 448, 652
MlsI	TGGCCA	1 cut(s)	823
MluCI	AATT	5 cut(s)	40, 117, 564, 828, 893
MluNI	TGGCCA	1 cut(s)	823
MmeI	TCCRAC	2 cut(s)	216, 958
Mox20I	TGGCCA	1 cut(s)	823
MroXI	GAANNNNTTC	2 cut(s)	121, 985
MscI	TGGCCA	1 cut(s)	823
MseI	TTAA	1 cut(s)	563
MslI	CAYNNNNRTG	2 cut(s)	158, 787
Msp20I	TGGCCA	1 cut(s)	823
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	3 cut(s)	144, 692, 712
MvaI	CCWGG	3 cut(s)	144, 692, 712
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	6 cut(s)	422, 431, 476, 530, 727, 779
NdeII	GATC	2 cut(s)	574, 809
NlaIII	CATG	3 cut(s)	157, 581, 1027
NlaIV	GGNNCC	4 cut(s)	141, 267, 294, 982
NmuCI	GTSAC	3 cut(s)	568, 970, 1012
NspI	RCATGY	1 cut(s)	157
PagI	TCATGA	1 cut(s)	1023
PciI	ACATGT	1 cut(s)	153
PdmI	GAANNNNTTC	2 cut(s)	121, 985
PfeI	GAWTC	2 cut(s)	28, 257
PkrI	GCNGC	5 cut(s)	9, 88, 105, 535, 772
PscI	ACATGT	1 cut(s)	153
Psp6I	CCWGG	3 cut(s)	142, 690, 710
PspGI	CCWGG	3 cut(s)	142, 690, 710
PspN4I	GGNNCC	4 cut(s)	141, 267, 294, 982
PspPI	GGNCC	1 cut(s)	588
PstNI	CAGNNNCTG	1 cut(s)	533
RsaI	GTAC	3 cut(s)	112, 607, 1061
RsaNI	GTAC	3 cut(s)	111, 606, 1060
RseI	CAYNNNNRTG	2 cut(s)	158, 787
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	5 cut(s)	8, 87, 104, 534, 771
Sau3AI	GATC	2 cut(s)	574, 809
Sau96I	GGNCC	1 cut(s)	588
ScaI	AGTACT	1 cut(s)	1061
ScrFI	CCNGG	3 cut(s)	144, 692, 712
SfcI	CTRYAG	2 cut(s)	596, 1047
SmiMI	CAYNNNNRTG	2 cut(s)	158, 787
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	5 cut(s)	40, 117, 564, 828, 893
SsiI	CCGC	3 cut(s)	103, 449, 680
SspMI	CTAG	4 cut(s)	114, 270, 758, 938
StyD4I	CCNGG	3 cut(s)	142, 690, 710
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	6 cut(s)	62, 82, 98, 600, 914, 976
TaqI	TCGA	2 cut(s)	317, 1040
TasI	AATT	5 cut(s)	40, 117, 564, 828, 893
TatI	WGTACW	2 cut(s)	605, 1059
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	28, 257
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	3 cut(s)	568, 970, 1012
TseI	GCWGC	4 cut(s)	7, 86, 533, 770
Tsp45I	GTSAC	3 cut(s)	568, 970, 1012
TspDTI	ATGAA	5 cut(s)	399, 448, 507, 874, 923
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	577
XapI	RAATTY	1 cut(s)	40
XbaI	TCTAGA	1 cut(s)	937
XceI	RCATGY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	2 cut(s)	133, 224
XmnI	GAANNNNTTC	2 cut(s)	121, 985
XspI	CTAG	4 cut(s)	114, 270, 758, 938
ZrmI	AGTACT	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.