Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009433

Physical Location & Seq

Genomic Coordinates Forward (+)

6713329 .. 6715933

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1038500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGGTGCAATCAGTCTGTCGCGGGATTCCCACTTCAAATTTCGGTTTCTCCAACCACCGCATACTCCCTGCTCAGATCGTTTTCGCAGGCCACGCCGGGCGGAGGGATGAAAAGCTCCACCGTAGCGGAATTTCTGCCAAATCATATTTGAACAGAGGAGCTATTCAATGTGTTTCAAATTCTAGTCGGGATGCGAAGTTGGAATTCTCAGGTGGGGATAGTTCTAATGTTCCTGTTAAAAAAATTGATGGGGTGGAGCCTTTTCGGGGTAAATCGGGTTCAATTTCGTTCTACGGTTTGACACACCAGTTGGCAGAGGAAGGGAAATTGATTTCGGCCCCTTTTGATGAAGAGAAGGGCTCGTTTATTTGGTTTATCGCCCCTGTTGCTTTGATTTCATCGTTGATTCTTCCACAGTTCTTCATTGGTAATGCAGTTGAGGCCTTCTTGAAGGACGAGACTATCGTAGAAATTGTGACTTCATTATCGTACGAGGCTGTATTTTATGTGGGTCTTGCAATATTCCTGCTTGTAACCGATAGAGTGCAAAGGCCCTATCTGCAGTTCAGTCCAAAGAGATGGGGTCTCATTACCGGCCTAAGAGGATACTTGACATCTGCTTTCCTCACCACGGGATTCAAAGTCATGGCTCCTCTGTTTGCTGTTTATGTAACCTGGCCACTGCTTGGCTTTCCGGCCTTGATTTCTGTGATTCCCTTTCTAGTTGGCTGTGTTGCTCAACTTGCATTTGAGATGGTTCTTGAAAAACGTCAGTCATCTTGCTGGCCTCTAGTTCCCATTATTTTCGAGGTTTATCGACTATATCAGTTGACAAAAGCTACTTCCTTTATCCAGAATTTGATGTTTGCCATGAACGGTCTTCCTACATCCCCTGAACTGCTAGAAAAAAGCGGTGCACTATTTGCTATGATGGTAACCTTCCGAGTTGTCAGCCTGGTGTGCCTCTGGTCACTGACGACATTTCTTTTGAGGCTGTTTCCTTCCAGACCCGTTGCAGAGAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

38.11

Weight (kDa)

9.15

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48460 AT1G48460
fragaria_vesca	FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500
malus_domestica	MD00G1038500.v1.1
prunus_persica	Prupe.1G386100_v2.0.a1
pyrus_communis	pycom15g02990
rosa_chinensis	RchiOBHm_Chr6g0300231
rosa_laevigata	RLG00000011355
rosa_multiflora	Rmu_sc0001670.1_g000030
rosa_roxburghii	Rroxscaffold_7G00167990
rosa_rugosa	Rorug06G0294300 Rorug06G0294400
rosa_samantha	Rh6AG406500 Rh6BG414400 Rh6CG421600 Rh6DG407200
rosa_wichuraiana	Rw6G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccII	CGCG	1 cut(s)	24
AciI	CCGC	5 cut(s)	24, 61, 103, 129, 915
AcoI	YGGCCR	1 cut(s)	680
AcsI	RAATTY	5 cut(s)	40, 132, 181, 206, 859
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	4 cut(s)	105, 269, 634, 689
AgsI	TTSAA	8 cut(s)	39, 154, 170, 180, 285, 454, 643, 767
AjnI	CCWGG	2 cut(s)	677, 957
AluBI	AGCT	3 cut(s)	118, 164, 842
AluI	AGCT	3 cut(s)	118, 164, 842
Alw21I	GWGCWC	1 cut(s)	922
Alw26I	GTCTC	2 cut(s)	455, 593
Alw44I	GTGCAC	1 cut(s)	918
AoxI	GGCC	8 cut(s)	91, 339, 444, 554, 598, 680, 699, 788
ApaLI	GTGCAC	1 cut(s)	918
ApoI	RAATTY	5 cut(s)	40, 132, 181, 206, 859
ArsI	GACNNNNNNTTYG	2 cut(s)	973, 1005
AspS9I	GGNCC	2 cut(s)	340, 555
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	922
BalI	TGGCCA	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	922
BccI	CCATC	4 cut(s)	245, 576, 751, 928
BciT130I	CCWGG	2 cut(s)	679, 959
BciVI	GTATCC	1 cut(s)	602
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	455, 593
BfaI	CTAG	4 cut(s)	186, 725, 794, 905
BfmI	CTRYAG	1 cut(s)	563
BfuI	GTATCC	1 cut(s)	602
Bme1390I	CCNGG	3 cut(s)	100, 679, 959
BmgT120I	GGNCC	2 cut(s)	340, 555
BmiI	GGNNCC	3 cut(s)	261, 342, 654
BmrFI	CCNGG	3 cut(s)	100, 679, 959
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	875
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BpuMI	CCSGG	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	593
BsaJI	CCNNGG	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 269, 634, 689
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	679, 959
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	3 cut(s)	115, 199, 890
BseLI	CCNNNNNNNGG	4 cut(s)	105, 269, 634, 689
BseMII	CTCAG	2 cut(s)	89, 225
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	174, 645
BseSI	GKGCMC	1 cut(s)	922
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	8 cut(s)	93, 341, 446, 556, 600, 682, 701, 790
BsiHKAI	GWGCWC	1 cut(s)	922
BsiSI	CCGG	3 cut(s)	99, 597, 698
BsiWI	CGTACG	1 cut(s)	492
BslI	CCNNNNNNNGG	4 cut(s)	105, 269, 634, 689
BsmAI	GTCTC	2 cut(s)	455, 593
BsnI	GGCC	8 cut(s)	93, 341, 446, 556, 600, 682, 701, 790
Bso31I	GGTCTC	1 cut(s)	593
Bsp1286I	GDGCHC	2 cut(s)	365, 922
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	5 cut(s)	24, 61, 103, 129, 915
BspANI	GGCC	8 cut(s)	93, 341, 446, 556, 600, 682, 701, 790
BspCNI	CTCAG	2 cut(s)	88, 224
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	261, 342, 654
BspMAI	CTGCAG	1 cut(s)	567
BspTNI	GGTCTC	1 cut(s)	593
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	679, 959
Bst4CI	ACNGT	4 cut(s)	125, 299, 420, 881
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstC8I	GCNNGC	2 cut(s)	91, 788
BstDEI	CTNAG	3 cut(s)	75, 211, 602
BstDSI	CCRYGG	1 cut(s)	633
BstEII	GGTNACC	1 cut(s)	937
BstF5I	GGATG	3 cut(s)	115, 199, 890
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	2 cut(s)	455, 593
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 389, 443, 562, 746, 926, 963
BstNI	CCWGG	2 cut(s)	679, 959
BstPI	GGTNACC	1 cut(s)	937
BstSCI	CCNGG	3 cut(s)	98, 677, 957
BstSFI	CTRYAG	1 cut(s)	563
BstSLI	GKGCMC	1 cut(s)	922
BstUI	CGCG	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	875
BstXI	CCANNNNNNTGG	1 cut(s)	582
BsuI	GTATCC	1 cut(s)	602
BsuRI	GGCC	8 cut(s)	93, 341, 446, 556, 600, 682, 701, 790
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	115, 199, 890
BtsI	GCAGTG	1 cut(s)	683
BtsIMutI	CAGTG	2 cut(s)	683, 974
Cac8I	GCNNGC	2 cut(s)	91, 788
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	2 cut(s)	340, 555
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	2 cut(s)	649, 874
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	3 cut(s)	75, 211, 602
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	680
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	593
Eco91I	GGTNACC	1 cut(s)	937
EcoO109I	RGGNCCY	1 cut(s)	555
EcoO65I	GGTNACC	1 cut(s)	937
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	677, 957
EcoT38I	GRGCYC	1 cut(s)	365
FaeI	CATG	2 cut(s)	652, 877
FaiI	YATR	8 cut(s)	65, 148, 510, 650, 672, 826, 875, 932
FatI	CATG	2 cut(s)	648, 873
FauI	CCCGC	1 cut(s)	17
FokI	GGATG	3 cut(s)	122, 206, 877
FriOI	GRGCYC	1 cut(s)	365
FspBI	CTAG	4 cut(s)	186, 725, 794, 905
HaeIII	GGCC	8 cut(s)	93, 341, 446, 556, 600, 682, 701, 790
HapII	CCGG	3 cut(s)	99, 597, 698
Hin1II	CATG	2 cut(s)	652, 877
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HinfI	GANTC	4 cut(s)	28, 409, 639, 715
HpaII	CCGG	3 cut(s)	99, 597, 698
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	2 cut(s)	834, 920
Hpy188I	TCNGA	2 cut(s)	78, 947
Hpy188III	TCNNGA	5 cut(s)	191, 451, 764, 856, 1008
Hpy8I	GTNNAC	2 cut(s)	834, 920
HpyAV	CCTTC	6 cut(s)	317, 352, 448, 457, 952, 1014
HpyCH4III	ACNGT	4 cut(s)	125, 299, 420, 881
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	8 cut(s)	10, 437, 521, 550, 565, 749, 920, 1019
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 389, 443, 562, 746, 926, 963
HpyF3I	CTNAG	3 cut(s)	75, 211, 602
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	2 cut(s)	652, 877
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	4 cut(s)	123, 161, 259, 658
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	4 cut(s)	186, 725, 794, 905
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	5 cut(s)	478, 535, 673, 937, 972
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	4 cut(s)	365, 404, 415, 875
MhlI	GDGCHC	2 cut(s)	365, 922
MlsI	TGGCCA	1 cut(s)	682
MluCI	AATT	9 cut(s)	40, 132, 181, 206, 246, 285, 329, 474, 859
MluNI	TGGCCA	1 cut(s)	682
MmeI	TCCRAC	2 cut(s)	78, 183
Mox20I	TGGCCA	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	682
MseI	TTAA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	682
MspI	CCGG	3 cut(s)	99, 597, 698
MspR9I	CCNGG	3 cut(s)	100, 679, 959
MvaI	CCWGG	2 cut(s)	679, 959
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	7 cut(s)	95, 389, 443, 562, 746, 926, 963
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	2 cut(s)	652, 877
NlaIV	GGNNCC	3 cut(s)	261, 342, 654
NmuCI	GTSAC	2 cut(s)	478, 972
PceI	AGGCCT	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	28, 409, 639, 715
Pfl23II	CGTACG	1 cut(s)	492
PflMI	CCANNNNNTGG	1 cut(s)	689
Psp6I	CCWGG	2 cut(s)	677, 957
PspEI	GGTNACC	1 cut(s)	937
PspGI	CCWGG	2 cut(s)	677, 957
PspLI	CGTACG	1 cut(s)	492
PspN4I	GGNNCC	3 cut(s)	261, 342, 654
PspPI	GGNCC	2 cut(s)	340, 555
PsrI	GAACNNNNNNTAC	2 cut(s)	265, 297
PstI	CTGCAG	1 cut(s)	567
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	2 cut(s)	340, 555
ScrFI	CCNGG	3 cut(s)	100, 679, 959
SduI	GDGCHC	2 cut(s)	365, 922
SetI	ASST	9 cut(s)	9, 120, 166, 217, 680, 775, 816, 844, 944
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	563
Sse9I	AATT	9 cut(s)	40, 132, 181, 206, 246, 285, 329, 474, 859
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	5 cut(s)	24, 61, 103, 129, 915
SspI	AATATT	1 cut(s)	525
SspMI	CTAG	4 cut(s)	186, 725, 794, 905
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	3 cut(s)	98, 677, 957
TaaI	ACNGT	4 cut(s)	125, 299, 420, 881
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	2 cut(s)	810, 820
TasI	AATT	9 cut(s)	40, 132, 181, 206, 246, 285, 329, 474, 859
TfiI	GAWTC	4 cut(s)	28, 409, 639, 715
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	690, 981
TseFI	GTSAC	2 cut(s)	478, 972
Tsp45I	GTSAC	2 cut(s)	478, 972
TspDTI	ATGAA	6 cut(s)	126, 366, 390, 415, 474, 890
TspRI	CASTG	2 cut(s)	690, 981
Van91I	CCANNNNNTGG	1 cut(s)	689
VneI	GTGCAC	1 cut(s)	918
XapI	RAATTY	5 cut(s)	40, 132, 181, 206, 859
XspI	CTAG	4 cut(s)	186, 725, 794, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.