Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001670.1

Orthogroup ID

OG0009433

Physical Location & Seq

Genomic Coordinates Reverse (-)

141386 .. 144996

Gene Structure 3611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001670.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atggagctgcaatcagtttgtcttgggattcccacctcaaatttcactttatccaataaccgtatatcccctcaccaaagtgttacagcaaaccacggtgggcaattccgtactagaattgcttccaaatcttattttgtgccgggattaaatatgtttgtgaagaagtcttcaatgctttgcttgaacaaaggagctattatgtgtgcttctaaccctagtctggatgggaagttggagttctcgagagagaaagattctaacgtccctagtaaggcaactgatacggtggagccttttcgtggcaagtcgggttcaatttcgttttgtgggttgacacaccaattggtagaggaagggaaattgctttcagccccgttcgatgaagagaaggggtcgtttctttggtttttagctcctgttgccttgattgcatcgtttatttttccgcagttcttcattggtaatgcaattgaaggttacttgaaggacgaggttctcgtagaaatcgcaacttcattatcttcagaggctgtattttatgtgggacttgcgacatttttacttgtcactgaccatgttcagaggccctatctacagttcagtacaaagagatggggtctcattactggcctaagaggatacttgacatctgctttcttcacatcgggcttcaaggtggttgcacctctagtcgctgtttatgtaacctggccagtgcttggcttgccagccttggttgctgttgctccctttctagttggttgtgctgctcagcttgcatttgagagggtacttgacaagcgagggtcatcttgttggcctctagttcctattatttttgaggtttacagactatatcagctgataaaagctgattactttatcaagaaattgatgtatacaatgaacggtcttcctacatccccagaacttctagagaaaagcggtgcattatttgcaatggaggtcactgtcggaaccctttgtgtgtcggcctctcagcactggaagaaaaagaattataacgtcgtcgtatttggcattgttgcggttttcttccagttcctcgctgacgattcgagagtcggcgaaaacagaaagcagagcattttccatacattccggctgaaattcaagcattcctcttctggaatggcgaagtcttgcagtggcctagcagatgagctagtcaagtgtcttagtgagtgtgattgcattaaggttgagaagcggtcgatccgggaatgtgccggagagaagagcccatcgatatctagcgaatgtatcggtctgagggaaacatatttcaattgcaagagaggccaggttgacatgagaaataggattcgcgggaacaaaggctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

456

Amino Acids

50.53

Weight (kDa)

9.11

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48460 AT1G48460
fragaria_vesca	FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500
malus_domestica	MD00G1038500.v1.1
prunus_persica	Prupe.1G386100_v2.0.a1
pyrus_communis	pycom15g02990
rosa_chinensis	RchiOBHm_Chr6g0300231
rosa_laevigata	RLG00000011355
rosa_multiflora	Rmu_sc0001670.1_g000030
rosa_roxburghii	Rroxscaffold_7G00167990
rosa_rugosa	Rorug06G0294300 Rorug06G0294400
rosa_samantha	Rh6AG406500 Rh6BG414400 Rh6CG421600 Rh6DG407200
rosa_wichuraiana	Rw6G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1026
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccI	GTMKAC	1 cut(s)	902
AccII	CGCG	1 cut(s)	1353
AciI	CCGC	5 cut(s)	449, 948, 1052, 1234, 1353
AclWI	GGATC	1 cut(s)	1234
AcoI	YGGCCR	1 cut(s)	713
AcsI	RAATTY	2 cut(s)	40, 1133
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	3 cut(s)	112, 607, 795
AfiI	CCNNNNNNNGG	4 cut(s)	223, 274, 302, 722
AgsI	TTSAA	8 cut(s)	174, 187, 318, 476, 487, 676, 1138, 1312
AjnI	CCWGG	2 cut(s)	710, 1326
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	7 cut(s)	7, 197, 416, 778, 865, 875, 1189
AluI	AGCT	7 cut(s)	7, 197, 416, 778, 865, 875, 1189
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	1 cut(s)	1234
AlwNI	CAGNNNCTG	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	7 cut(s)	587, 631, 713, 821, 996, 1174, 1324
ApeKI	GCWGC	2 cut(s)	7, 770
ApoI	RAATTY	2 cut(s)	40, 1133
Asp700I	GAANNNNTTC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	588
AsuC2I	CCSGG	2 cut(s)	144, 1244
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	1268
BbsI	GAAGAC	2 cut(s)	162, 908
BbvI	GCAGC	1 cut(s)	757
BccI	CCATC	3 cut(s)	221, 609, 1276
BciT130I	CCWGG	2 cut(s)	712, 1328
BciVI	GTATCC	1 cut(s)	635
BcnI	CCSGG	2 cut(s)	144, 1244
BcoDI	GTCTC	1 cut(s)	626
BfmI	CTRYAG	1 cut(s)	596
BfuI	GTATCC	1 cut(s)	635
BisI	GCNGC	2 cut(s)	8, 771
BlpI	GCTNAGC	1 cut(s)	774
BlsI	GCNGC	2 cut(s)	9, 772
Bme1390I	CCNGG	4 cut(s)	144, 712, 1244, 1328
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	2 cut(s)	294, 982
BmrFI	CCNGG	4 cut(s)	144, 712, 1244, 1328
BmsI	GCATC	1 cut(s)	443
BpiI	GAAGAC	2 cut(s)	162, 908
Bpu1102I	GCTNAGC	1 cut(s)	774
BpuMI	CCSGG	2 cut(s)	144, 1244
Bsa29I	ATCGAT	1 cut(s)	1271
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	2 cut(s)	94, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 274, 302, 722
Bse1I	ACTGG	4 cut(s)	634, 716, 1013, 1063
Bse3DI	GCAATG	1 cut(s)	969
BseBI	CCWGG	2 cut(s)	712, 1328
BseCI	ATCGAT	1 cut(s)	1271
BseDI	CCNNGG	2 cut(s)	94, 735
BseGI	GGATG	2 cut(s)	232, 923
BseLI	CCNNNNNNNGG	4 cut(s)	223, 274, 302, 722
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	3 cut(s)	788, 1016, 1286
BseNI	ACTGG	4 cut(s)	634, 716, 1013, 1063
BseXI	GCAGC	1 cut(s)	757
Bsh1236I	CGCG	1 cut(s)	1353
Bsh1285I	CGRYCG	1 cut(s)	1238
BshFI	GGCC	7 cut(s)	589, 633, 715, 823, 998, 1176, 1326
BshVI	ATCGAT	1 cut(s)	1271
BsiEI	CGRYCG	1 cut(s)	1238
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	4 cut(s)	143, 1126, 1243, 1254
BslFI	GGGAC	2 cut(s)	251, 561
BslI	CCNNNNNNNGG	4 cut(s)	223, 274, 302, 722
BsmAI	GTCTC	1 cut(s)	626
BsmFI	GGGAC	2 cut(s)	251, 561
BsmI	GAATGC	1 cut(s)	1141
BsnI	GGCC	7 cut(s)	589, 633, 715, 823, 998, 1176, 1326
Bso31I	GGTCTC	1 cut(s)	626
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	1268
Bsp143I	GATC	1 cut(s)	1239
Bsp1720I	GCTNAGC	1 cut(s)	774
BspACI	CCGC	5 cut(s)	449, 948, 1052, 1234, 1353
BspANI	GGCC	7 cut(s)	589, 633, 715, 823, 998, 1176, 1326
BspCNI	CTCAG	3 cut(s)	787, 1015, 1287
BspDI	ATCGAT	1 cut(s)	1271
BspFNI	CGCG	1 cut(s)	1353
BspLI	GGNNCC	2 cut(s)	294, 982
BspPI	GGATC	1 cut(s)	1234
BspQI	GCTCTTC	1 cut(s)	1256
BspTNI	GGTCTC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	969
BsrI	ACTGG	4 cut(s)	634, 716, 1013, 1063
BssECI	CCNNGG	2 cut(s)	94, 735
BssMI	GATC	1 cut(s)	1239
BssNAI	GTATAC	1 cut(s)	903
BssT1I	CCWWGG	1 cut(s)	735
Bst1107I	GTATAC	1 cut(s)	903
Bst2UI	CCWGG	2 cut(s)	712, 1328
Bst4CI	ACNGT	6 cut(s)	62, 98, 289, 600, 914, 976
Bst6I	CTCTTC	3 cut(s)	381, 1153, 1256
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstC8I	GCNNGC	3 cut(s)	728, 732, 780
BstDEI	CTNAG	5 cut(s)	635, 774, 1002, 1202, 1295
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	232, 923
BstFNI	CGCG	1 cut(s)	1353
BstKTI	GATC	1 cut(s)	1242
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	1 cut(s)	1239
BstMCI	CGRYCG	1 cut(s)	1238
BstMWI	GCNNNNNNNGC	7 cut(s)	422, 431, 727, 740, 779, 959, 1323
BstNI	CCWGG	2 cut(s)	712, 1328
BstSCI	CCNGG	4 cut(s)	142, 710, 1242, 1326
BstSFI	CTRYAG	1 cut(s)	596
BstUI	CGCG	1 cut(s)	1353
BstV1I	GCAGC	1 cut(s)	757
BstV2I	GAAGAC	2 cut(s)	162, 908
BstZ17I	GTATAC	1 cut(s)	903
Bsu15I	ATCGAT	1 cut(s)	1271
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	7 cut(s)	589, 633, 715, 823, 998, 1176, 1326
BsuTUI	ATCGAT	1 cut(s)	1271
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	232, 923
BtsI	GCAGTG	1 cut(s)	1177
BtsIMutI	CAGTG	5 cut(s)	570, 723, 972, 1006, 1177
Cac8I	GCNNGC	3 cut(s)	728, 732, 780
CaiI	CAGNNNCTG	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	588
ClaI	ATCGAT	1 cut(s)	1271
Csp6I	GTAC	3 cut(s)	111, 606, 794
CviAII	CATG	2 cut(s)	578, 1336
CviQI	GTAC	3 cut(s)	111, 606, 794
DdeI	CTNAG	5 cut(s)	635, 774, 1002, 1202, 1295
DpnI	GATC	1 cut(s)	1241
DpnII	GATC	1 cut(s)	1239
EaeI	YGGCCR	1 cut(s)	713
Eam1104I	CTCTTC	3 cut(s)	381, 1153, 1256
EarI	CTCTTC	3 cut(s)	381, 1153, 1256
Eco130I	CCWWGG	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	1268
Eco31I	GGTCTC	1 cut(s)	626
Eco32I	GATATC	1 cut(s)	1275
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRII	CCWGG	2 cut(s)	710, 1326
EcoRV	GATATC	1 cut(s)	1275
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	1268
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	2 cut(s)	581, 1339
FaqI	GGGAC	2 cut(s)	251, 561
FatI	CATG	2 cut(s)	577, 1335
FauI	CCCGC	1 cut(s)	1346
FblI	GTMKAC	1 cut(s)	902
Fnu4HI	GCNGC	2 cut(s)	8, 771
FokI	GGATG	2 cut(s)	239, 910
FriOI	GRGCYC	1 cut(s)	1268
Fsp4HI	GCNGC	2 cut(s)	8, 771
GluI	GCNGC	2 cut(s)	8, 771
HaeIII	GGCC	7 cut(s)	589, 633, 715, 823, 998, 1176, 1326
HapII	CCGG	4 cut(s)	143, 1126, 1243, 1254
Hin1II	CATG	2 cut(s)	581, 1339
HincII	GTYRAC	2 cut(s)	336, 1333
HindII	GTYRAC	2 cut(s)	336, 1333
HinfI	GANTC	5 cut(s)	28, 257, 1079, 1086, 1348
HpaII	CCGG	4 cut(s)	143, 1126, 1243, 1254
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	4 cut(s)	336, 850, 903, 1333
Hpy188I	TCNGA	4 cut(s)	529, 585, 980, 1296
Hpy188III	TCNNGA	7 cut(s)	224, 244, 246, 889, 938, 1083, 1152
Hpy8I	GTNNAC	4 cut(s)	336, 850, 903, 1333
Hpy99I	CGWCG	2 cut(s)	1034, 1037
HpyAV	CCTTC	4 cut(s)	350, 385, 470, 481
HpyCH4III	ACNGT	6 cut(s)	62, 98, 289, 600, 914, 976
HpyCH4IV	ACGT	2 cut(s)	264, 1029
HpyF10VI	GCNNNNNNNGC	7 cut(s)	422, 431, 727, 740, 779, 959, 1323
HpyF3I	CTNAG	5 cut(s)	635, 774, 1002, 1202, 1295
HpySE526I	ACGT	2 cut(s)	264, 1029
Hsp92II	CATG	2 cut(s)	581, 1339
Kzo9I	GATC	1 cut(s)	1239
LguI	GCTCTTC	1 cut(s)	1256
LmnI	GCTCC	5 cut(s)	4, 194, 292, 421, 754
Lsp1109I	GCAGC	1 cut(s)	757
LweI	GCATC	1 cut(s)	443
MaeII	ACGT	2 cut(s)	264, 1029
MaeIII	GTNAC	5 cut(s)	82, 479, 568, 706, 970
MalI	GATC	1 cut(s)	1241
MboI	GATC	1 cut(s)	1239
MfeI	CAATTG	3 cut(s)	344, 471, 1312
MhlI	GDGCHC	1 cut(s)	1268
MlsI	TGGCCA	1 cut(s)	715
MluNI	TGGCCA	1 cut(s)	715
MlyI	GAGTC	1 cut(s)	1095
MmeI	TCCRAC	2 cut(s)	216, 958
Mox20I	TGGCCA	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	715
MseI	TTAA	2 cut(s)	149, 1221
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	715
MspA1I	CMGCKG	1 cut(s)	865
MspI	CCGG	4 cut(s)	143, 1126, 1243, 1254
MspR9I	CCNGG	4 cut(s)	144, 712, 1244, 1328
MunI	CAATTG	3 cut(s)	344, 471, 1312
Mva1269I	GAATGC	1 cut(s)	1141
MvaI	CCWGG	2 cut(s)	712, 1328
MvnI	CGCG	1 cut(s)	1353
MwoI	GCNNNNNNNGC	7 cut(s)	422, 431, 727, 740, 779, 959, 1323
NciI	CCSGG	2 cut(s)	144, 1244
NdeII	GATC	1 cut(s)	1239
NlaIII	CATG	2 cut(s)	581, 1339
NlaIV	GGNNCC	2 cut(s)	294, 982
NmuCI	GTSAC	2 cut(s)	568, 970
OliI	CACNNNNGTG	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	1256
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PctI	GAATGC	1 cut(s)	1141
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	4 cut(s)	28, 257, 1079, 1348
PflMI	CCANNNNNTGG	1 cut(s)	722
PfoI	TCCNGGA	1 cut(s)	1242
PkrI	GCNGC	2 cut(s)	9, 772
PleI	GAGTC	1 cut(s)	1094
PpsI	GAGTC	1 cut(s)	1094
PsiI	TTATAA	1 cut(s)	1026
Psp6I	CCWGG	2 cut(s)	710, 1326
PspGI	CCWGG	2 cut(s)	710, 1326
PspN4I	GGNNCC	2 cut(s)	294, 982
PspPI	GGNCC	1 cut(s)	588
PstNI	CAGNNNCTG	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	865
RsaI	GTAC	3 cut(s)	112, 607, 795
RsaNI	GTAC	3 cut(s)	111, 606, 794
RseI	CAYNNNNRTG	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	1256
SaqAI	TTAA	2 cut(s)	149, 1221
SatI	GCNGC	2 cut(s)	8, 771
Sau3AI	GATC	1 cut(s)	1239
Sau96I	GGNCC	1 cut(s)	588
SchI	GAGTC	1 cut(s)	1095
ScrFI	CCNGG	4 cut(s)	144, 712, 1244, 1328
SduI	GDGCHC	1 cut(s)	1268
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	1 cut(s)	596
Sfr274I	CTCGAG	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
SsiI	CCGC	5 cut(s)	449, 948, 1052, 1234, 1353
StyD4I	CCNGG	4 cut(s)	142, 710, 1242, 1326
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	6 cut(s)	62, 98, 289, 600, 914, 976
TaiI	ACGT	2 cut(s)	267, 1032
TaqI	TCGA	5 cut(s)	245, 381, 1082, 1238, 1271
TaqII	GACCGA	1 cut(s)	1280
TatI	WGTACW	1 cut(s)	605
TfiI	GAWTC	4 cut(s)	28, 257, 1079, 1348
Tru1I	TTAA	2 cut(s)	149, 1221
Tru9I	TTAA	2 cut(s)	149, 1221
TscAI	CASTG	5 cut(s)	577, 723, 979, 1013, 1177
TseFI	GTSAC	2 cut(s)	568, 970
TseI	GCWGC	2 cut(s)	7, 770
Tsp45I	GTSAC	2 cut(s)	568, 970
TspDTI	ATGAA	4 cut(s)	399, 448, 507, 923
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	5 cut(s)	577, 723, 979, 1013, 1177
Van91I	CCANNNNNTGG	1 cut(s)	722
XapI	RAATTY	2 cut(s)	40, 1133
XbaI	TCTAGA	1 cut(s)	937
XhoI	CTCGAG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	902
XmnI	GAANNNNTTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.