Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009433

Physical Location & Seq

Genomic Coordinates Forward (+)

59476720 .. 59479336

Gene Structure 2617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG407200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTTTGTGAAGAAGTCCTCAATGCTTTGCTTGAACAAAGGAGCTATTATGTGTGCTTCTAACCCTAGTCTGGATGGGAAGTTGGAGTTCTCGAGAGAGAAAGATTCTAACGTCCCTAGTAAGGCAACTGATGCGGTGGAGCCTTTTCGTGGCAAGTCGGGTTCGATTTCGTTTTGTGGGTTGACACACCAATTGGTAGAGGAAGGGAAATTGCTTTCAGCCCCGTTCGATGAAGAGAAGGGGTCGTTTCTTTGGTTTTTAGCCCCTGTTGTCTTGATTGCGTCATTTATTTTTCCGCAGTTCTTCATTGGTAATGCAATTGAAGGTTACTTGAAGGACGAGGTTCTCGTAGAAATCGCAACTTCATTATCTTCAGAGGCTGTATTTTATGTGGGACTTGCGACATTTTTACTTGTCACTGACCATGTTCAGAGGCCCTATCTACAGTTCAGTACAAAGAGATGGGGTCTCATTACTGGCCTAAGAGGATACTTGACATCTGCTTTCTTCACATCGGGCTTCAAGGTGGTTGCACCTCTAGTCGCTGTTTATGTAACCTGGCCAGTGCTTGGCTTGCCAGCCTTGGTTGCTGTTGCTCCCTTTCTAGTTGGTTGTGCTGCTCAGCTTGCATTTGAGAGGGTACTTGACAAGCGAGGGTCATCTTGTTGGCCTCTAGTTCCTATTATCTTTGAGGTTTACAGACTATATCAGCTGACAAAAGCTGATTACTTTATCAAGAAATTGATGTATACAATGAACGGTCTTCCTACATCCCCAGAACTTCTAGAGAAAACCGGTGCATTATTTGCGATGGAGGTCACTGTCGGAACCCTTTGTGTGGTGTGCTTGTGGTCTCTGGTGACATTTCTCTTGAGGCTTTTTCCTTCCAGACCGGTAGCAGAGAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

33.5

Weight (kDa)

8.39

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48460 AT1G48460
fragaria_vesca	FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500
malus_domestica	MD00G1038500.v1.1
prunus_persica	Prupe.1G386100_v2.0.a1
pyrus_communis	pycom15g02990
rosa_chinensis	RchiOBHm_Chr6g0300231
rosa_laevigata	RLG00000011355
rosa_multiflora	Rmu_sc0001670.1_g000030
rosa_roxburghii	Rroxscaffold_7G00167990
rosa_rugosa	Rorug06G0294300 Rorug06G0294400
rosa_samantha	Rh6AG406500 Rh6BG414400 Rh6CG421600 Rh6DG407200
rosa_wichuraiana	Rw6G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	749
AciI	CCGC	2 cut(s)	134, 296
AcoI	YGGCCR	1 cut(s)	560
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	3 cut(s)	454, 642, 908
AfiI	CCNNNNNNNGG	5 cut(s)	70, 121, 149, 569, 838
AgeI	ACCGGT	2 cut(s)	794, 892
AgsI	TTSAA	4 cut(s)	34, 323, 334, 523
AjnI	CCWGG	1 cut(s)	557
AluBI	AGCT	4 cut(s)	44, 625, 712, 722
AluI	AGCT	4 cut(s)	44, 625, 712, 722
Alw26I	GTCTC	2 cut(s)	473, 858
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	4 cut(s)	434, 478, 560, 668
ApeKI	GCWGC	1 cut(s)	617
AsiGI	ACCGGT	2 cut(s)	794, 892
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	1 cut(s)	871
AvaI	CYCGRG	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	755
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	3 cut(s)	68, 456, 805
BciT130I	CCWGG	1 cut(s)	559
BciVI	GTATCC	1 cut(s)	482
BcoDI	GTCTC	2 cut(s)	473, 858
BfaI	CTAG	6 cut(s)	66, 117, 539, 605, 674, 785
BfmI	CTRYAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	482
BisI	GCNGC	1 cut(s)	618
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	1 cut(s)	619
BmcAI	AGTACT	1 cut(s)	908
Bme1390I	CCNGG	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	2 cut(s)	141, 829
BmrFI	CCNGG	1 cut(s)	559
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	755
Bpu1102I	GCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	892
BsaI	GGTCTC	2 cut(s)	473, 858
BsaJI	CCNNGG	1 cut(s)	582
BsaWI	WCCGGW	2 cut(s)	794, 892
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 121, 149, 569, 838
Bse118I	RCCGGY	2 cut(s)	794, 892
Bse1I	ACTGG	2 cut(s)	481, 563
BseBI	CCWGG	1 cut(s)	559
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	2 cut(s)	79, 770
BseLI	CCNNNNNNNGG	5 cut(s)	70, 121, 149, 569, 838
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	2 cut(s)	481, 563
BseXI	GCAGC	1 cut(s)	604
BshFI	GGCC	4 cut(s)	436, 480, 562, 670
BshTI	ACCGGT	2 cut(s)	794, 892
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	795, 893
BslFI	GGGAC	2 cut(s)	98, 408
BslI	CCNNNNNNNGG	5 cut(s)	70, 121, 149, 569, 838
BsmAI	GTCTC	2 cut(s)	473, 858
BsmFI	GGGAC	2 cut(s)	98, 408
BsnI	GGCC	4 cut(s)	436, 480, 562, 670
Bso31I	GGTCTC	2 cut(s)	473, 858
BsoBI	CYCGRG	1 cut(s)	91
Bsp1720I	GCTNAGC	1 cut(s)	621
BspACI	CCGC	2 cut(s)	134, 296
BspANI	GGCC	4 cut(s)	436, 480, 562, 670
BspCNI	CTCAG	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	141, 829
BspTNI	GGTCTC	2 cut(s)	473, 858
BsrFI	RCCGGY	2 cut(s)	794, 892
BsrI	ACTGG	2 cut(s)	481, 563
BssAI	RCCGGY	2 cut(s)	794, 892
BssECI	CCNNGG	1 cut(s)	582
BssNAI	GTATAC	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	582
Bst1107I	GTATAC	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	3 cut(s)	447, 761, 823
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	2 cut(s)	131, 806
BstC8I	GCNNGC	3 cut(s)	575, 579, 627
BstDEI	CTNAG	2 cut(s)	482, 621
BstF5I	GGATG	2 cut(s)	79, 770
BstMAI	GTCTC	2 cut(s)	473, 858
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 574, 587, 626, 806
BstNI	CCWGG	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	557
BstSFI	CTRYAG	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	1 cut(s)	755
BstZ17I	GTATAC	1 cut(s)	750
BsuI	GTATCC	1 cut(s)	482
BsuRI	GGCC	4 cut(s)	436, 480, 562, 670
BtgZI	GCGATG	1 cut(s)	824
BtsCI	GGATG	2 cut(s)	79, 770
BtsIMutI	CAGTG	3 cut(s)	417, 570, 819
Cac8I	GCNNGC	3 cut(s)	575, 579, 627
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr10I	RCCGGY	2 cut(s)	794, 892
Cfr13I	GGNCC	1 cut(s)	435
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	3 cut(s)	453, 641, 907
CspAI	ACCGGT	2 cut(s)	794, 892
CviAII	CATG	1 cut(s)	425
CviQI	GTAC	3 cut(s)	453, 641, 907
DdeI	CTNAG	2 cut(s)	482, 621
EaeI	YGGCCR	1 cut(s)	560
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	582
Eco31I	GGTCTC	2 cut(s)	473, 858
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	557
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	1 cut(s)	428
FaiI	YATR	6 cut(s)	50, 390, 426, 552, 706, 750
FaqI	GGGAC	2 cut(s)	98, 408
FatI	CATG	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	1 cut(s)	618
FokI	GGATG	2 cut(s)	86, 757
Fsp4HI	GCNGC	1 cut(s)	618
FspBI	CTAG	6 cut(s)	66, 117, 539, 605, 674, 785
GluI	GCNGC	1 cut(s)	618
HaeIII	GGCC	4 cut(s)	436, 480, 562, 670
HapII	CCGG	2 cut(s)	795, 893
HgaI	GACGC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	2 cut(s)	795, 893
HphI	GGTGA	1 cut(s)	871
Hpy166II	GTNNAC	3 cut(s)	183, 697, 750
Hpy188I	TCNGA	3 cut(s)	376, 432, 827
Hpy188III	TCNNGA	8 cut(s)	71, 91, 93, 274, 736, 785, 871, 888
Hpy8I	GTNNAC	3 cut(s)	183, 697, 750
HpyAV	CCTTC	5 cut(s)	197, 232, 317, 328, 894
HpyCH4III	ACNGT	3 cut(s)	447, 761, 823
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	317, 533, 629, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 574, 587, 626, 806
HpyF3I	CTNAG	2 cut(s)	482, 621
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	428
LmnI	GCTCC	3 cut(s)	41, 139, 601
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	6 cut(s)	66, 117, 539, 605, 674, 785
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	5 cut(s)	326, 415, 553, 817, 859
MboII	GAAGA	6 cut(s)	22, 245, 295, 363, 499, 755
MfeI	CAATTG	2 cut(s)	191, 318
MlsI	TGGCCA	1 cut(s)	562
MluCI	AATT	4 cut(s)	191, 209, 318, 740
MluNI	TGGCCA	1 cut(s)	562
MmeI	TCCRAC	2 cut(s)	63, 805
Mox20I	TGGCCA	1 cut(s)	562
MscI	TGGCCA	1 cut(s)	562
Msp20I	TGGCCA	1 cut(s)	562
MspA1I	CMGCKG	1 cut(s)	712
MspI	CCGG	2 cut(s)	795, 893
MspR9I	CCNGG	1 cut(s)	559
MunI	CAATTG	2 cut(s)	191, 318
MvaI	CCWGG	1 cut(s)	559
MwoI	GCNNNNNNNGC	5 cut(s)	131, 574, 587, 626, 806
NlaIII	CATG	1 cut(s)	428
NlaIV	GGNNCC	2 cut(s)	141, 829
NmuCI	GTSAC	3 cut(s)	415, 817, 859
PaeR7I	CTCGAG	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	569
PinAI	ACCGGT	2 cut(s)	794, 892
PkrI	GCNGC	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	2 cut(s)	141, 829
PspPI	GGNCC	1 cut(s)	435
PstNI	CAGNNNCTG	1 cut(s)	380
PvuII	CAGCTG	1 cut(s)	712
RsaI	GTAC	3 cut(s)	454, 642, 908
RsaNI	GTAC	3 cut(s)	453, 641, 907
SatI	GCNGC	1 cut(s)	618
Sau96I	GGNCC	1 cut(s)	435
ScaI	AGTACT	1 cut(s)	908
ScrFI	CCNGG	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	443
Sfr274I	CTCGAG	1 cut(s)	91
SlaI	CTCGAG	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	91, 871
SmoI	CTYRAG	2 cut(s)	91, 871
Sse9I	AATT	4 cut(s)	191, 209, 318, 740
SsiI	CCGC	2 cut(s)	134, 296
SspMI	CTAG	6 cut(s)	66, 117, 539, 605, 674, 785
StyD4I	CCNGG	1 cut(s)	557
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	3 cut(s)	447, 761, 823
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	92, 164, 228
TasI	AATT	4 cut(s)	191, 209, 318, 740
TatI	WGTACW	2 cut(s)	452, 906
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	3 cut(s)	424, 570, 826
TseFI	GTSAC	3 cut(s)	415, 817, 859
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	3 cut(s)	415, 817, 859
TspDTI	ATGAA	4 cut(s)	246, 295, 354, 770
TspRI	CASTG	3 cut(s)	424, 570, 826
Van91I	CCANNNNNTGG	1 cut(s)	569
XbaI	TCTAGA	1 cut(s)	784
XhoI	CTCGAG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	749
XspI	CTAG	6 cut(s)	66, 117, 539, 605, 674, 785
ZrmI	AGTACT	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.