Rh6AG406500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009433
Physical Location & Seq
Forward (+)
60415039 .. 60417161
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG406500.1

Sequence Viewer

Length: 1065 bp
ATGGAGCTGCAATCAGTTTGTCTTGGGATTCCCGCCTCAAATTTCACTTTATCCAATAACCGTATATCTCCTCACCAAAGTGTTACAGCAAACCACGGTGGGCGACTCCGTACTAGAATTGCTTCCAAATCTTATTTTGTGCCGGGATTAAATATGTTTGTGAAGAAGTCCTCAATGCTTTGCTTGAACAAAGGAGCTATTATGTGTGCTTCTAACCCTAGTCTGGATGGGAAGTTGGAGTTCTCGAGAGAGAAAGATTCTAACGTCCCTAGTAAGGCAACTGATACGGTGGAGCCTTTTCGTGGCAAGTCGGGTTCAATTTCGTTTTGTGGGTTGACACACCAATTGGTAGAGGAAGGGAAATTGCTTTCAGCCCCGTTCGATGAAGAGAAGGGGTCGTTTCTTTGGTTTTTAGCTCCTGTTGCCTTGATTGCATCGTTTATTTTTCCGCAGTTCTTCATTGGTAATGCAATTGAAGGTTACTTGAAGGACGAGGTTCTCGTAGAAATCGCAACTTCATTATCTTCAGAGGCTGTATTTTATGTGGGACTTGCGACATTTTTACTTGTCACTGACCATGTTCAGAGGCCCTATCTACAGTTCAGTACAAAGAGATGGGGTCTCATTACTGGCCTAAGAGGATACTTGACATCTGCTTTCTTCACATCGGGCTTCAAGGTGGTTGCACCTCTAGTCGCTGTTTATGTAACCTGGCCAGTGCTTGGCTTGCCAGCCTTGGTTGCTGTTACTCCCTTTCTAGTTGGTTGTGCTGCTCAGCTTGCATTTGAGAGGGTACTTGACAAGCGAGGGTCATCTTGTTGGCCTCTAGTTCCTATTATTTTTGAGGTTTACAGACTATATCAGCTGACAAAAGCTGATTACTTTATCAAGAAATTGATGTATACAATGAACGGTCTTCCTACATCCCCAGAACTTCTAGAGAAAAGCGGTGCATTATTTGCAATGGAGGTCACTGTCGGAACCCTTTGTGTGGTTTGCTTGTGGTCTCTGGTGACATTTCTCTTGAGGCTTTTTCCTTCCAGACCGGTAGCAGAGAAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

39.04

Weight (kDa)

8.93

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 722
AccI GTMKAC 1 cut(s) 902
AciI CCGC 3 cut(s) 33, 449, 948
AcoI YGGCCR 1 cut(s) 713
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 4 cut(s) 112, 607, 795, 1061
AfiI CCNNNNNNNGG 5 cut(s) 223, 274, 302, 722, 991
AgeI ACCGGT 1 cut(s) 1045
AgsI TTSAA 5 cut(s) 187, 318, 476, 487, 676
AjnI CCWGG 1 cut(s) 710
AleI CACNNNNGTG 1 cut(s) 78
AluBI AGCT 6 cut(s) 7, 197, 416, 778, 865, 875
AluI AGCT 6 cut(s) 7, 197, 416, 778, 865, 875
Alw26I GTCTC 2 cut(s) 626, 1011
AlwNI CAGNNNCTG 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 4 cut(s) 587, 631, 713, 821
ApeKI GCWGC 2 cut(s) 7, 770
ApoI RAATTY 1 cut(s) 40
AsiGI ACCGGT 1 cut(s) 1045
Asp700I GAANNNNTTC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 588
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 65, 1024
AvaI CYCGRG 1 cut(s) 244
BalI TGGCCA 1 cut(s) 715
BbsI GAAGAC 1 cut(s) 908
BbvI GCAGC 1 cut(s) 757
BccI CCATC 2 cut(s) 221, 609
BciT130I CCWGG 1 cut(s) 712
BciVI GTATCC 1 cut(s) 635
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 626, 1011
BfaI CTAG 7 cut(s) 114, 219, 270, 692, 758, 827, 938
BfmI CTRYAG 1 cut(s) 596
BfuI GTATCC 1 cut(s) 635
BisI GCNGC 2 cut(s) 8, 771
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 2 cut(s) 9, 772
BmcAI AGTACT 1 cut(s) 1061
Bme1390I CCNGG 2 cut(s) 144, 712
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 588
BmiI GGNNCC 2 cut(s) 294, 982
BmrFI CCNGG 2 cut(s) 144, 712
BmsI GCATC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 908
Bpu1102I GCTNAGC 1 cut(s) 774
BpuEI CTTGAG 1 cut(s) 1045
BpuMI CCSGG 1 cut(s) 144
BsaI GGTCTC 2 cut(s) 626, 1011
BsaJI CCNNGG 2 cut(s) 94, 735
BsaWI WCCGGW 1 cut(s) 1045
Bsc4I CCNNNNNNNGG 5 cut(s) 223, 274, 302, 722, 991
Bse118I RCCGGY 1 cut(s) 1045
Bse1I ACTGG 2 cut(s) 634, 716
Bse3DI GCAATG 1 cut(s) 969
BseBI CCWGG 1 cut(s) 712
BseDI CCNNGG 2 cut(s) 94, 735
BseGI GGATG 2 cut(s) 232, 923
BseLI CCNNNNNNNGG 5 cut(s) 223, 274, 302, 722, 991
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 1 cut(s) 788
BseNI ACTGG 2 cut(s) 634, 716
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 757
BshFI GGCC 4 cut(s) 589, 633, 715, 823
BshTI ACCGGT 1 cut(s) 1045
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 2 cut(s) 143, 1046
BslFI GGGAC 2 cut(s) 251, 561
BslI CCNNNNNNNGG 5 cut(s) 223, 274, 302, 722, 991
BsmAI GTCTC 2 cut(s) 626, 1011
BsmFI GGGAC 2 cut(s) 251, 561
BsnI GGCC 4 cut(s) 589, 633, 715, 823
Bso31I GGTCTC 2 cut(s) 626, 1011
BsoBI CYCGRG 1 cut(s) 244
Bsp1720I GCTNAGC 1 cut(s) 774
BspACI CCGC 3 cut(s) 33, 449, 948
BspANI GGCC 4 cut(s) 589, 633, 715, 823
BspCNI CTCAG 1 cut(s) 787
BspLI GGNNCC 2 cut(s) 294, 982
BspTNI GGTCTC 2 cut(s) 626, 1011
BsrDI GCAATG 1 cut(s) 969
BsrFI RCCGGY 1 cut(s) 1045
BsrI ACTGG 2 cut(s) 634, 716
BssAI RCCGGY 1 cut(s) 1045
BssECI CCNNGG 2 cut(s) 94, 735
BssNAI GTATAC 1 cut(s) 903
BssT1I CCWWGG 1 cut(s) 735
Bst1107I GTATAC 1 cut(s) 903
Bst2UI CCWGG 1 cut(s) 712
Bst4CI ACNGT 6 cut(s) 62, 98, 289, 600, 914, 976
Bst6I CTCTTC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 959
BstC8I GCNNGC 3 cut(s) 728, 732, 780
BstDEI CTNAG 2 cut(s) 635, 774
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 232, 923
BstMAI GTCTC 2 cut(s) 626, 1011
BstMWI GCNNNNNNNGC 6 cut(s) 422, 431, 727, 740, 779, 959
BstNI CCWGG 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 142, 710
BstSFI CTRYAG 1 cut(s) 596
BstV1I GCAGC 1 cut(s) 757
BstV2I GAAGAC 1 cut(s) 908
BstZ17I GTATAC 1 cut(s) 903
BsuI GTATCC 1 cut(s) 635
BsuRI GGCC 4 cut(s) 589, 633, 715, 823
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 232, 923
BtsIMutI CAGTG 3 cut(s) 570, 723, 972
Cac8I GCNNGC 3 cut(s) 728, 732, 780
CaiI CAGNNNCTG 1 cut(s) 533
Cfr10I RCCGGY 1 cut(s) 1045
Cfr13I GGNCC 1 cut(s) 588
Csp6I GTAC 4 cut(s) 111, 606, 794, 1060
CspAI ACCGGT 1 cut(s) 1045
CviAII CATG 1 cut(s) 578
CviQI GTAC 4 cut(s) 111, 606, 794, 1060
DdeI CTNAG 2 cut(s) 635, 774
EaeI YGGCCR 1 cut(s) 713
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 735
Eco31I GGTCTC 2 cut(s) 626, 1011
Eco57I CTGAAG 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 710
EcoT14I CCWWGG 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 1 cut(s) 581
FaiI YATR 8 cut(s) 65, 155, 203, 543, 579, 705, 859, 903
FaqI GGGAC 2 cut(s) 251, 561
FatI CATG 1 cut(s) 577
FauI CCCGC 1 cut(s) 40
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 2 cut(s) 8, 771
FokI GGATG 2 cut(s) 239, 910
Fsp4HI GCNGC 2 cut(s) 8, 771
FspBI CTAG 7 cut(s) 114, 219, 270, 692, 758, 827, 938
GluI GCNGC 2 cut(s) 8, 771
HaeIII GGCC 4 cut(s) 589, 633, 715, 823
HapII CCGG 2 cut(s) 143, 1046
Hin1II CATG 1 cut(s) 581
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 3 cut(s) 28, 105, 257
HpaII CCGG 2 cut(s) 143, 1046
HphI GGTGA 2 cut(s) 65, 1024
Hpy166II GTNNAC 3 cut(s) 336, 850, 903
Hpy188I TCNGA 3 cut(s) 529, 585, 980
Hpy188III TCNNGA 7 cut(s) 224, 244, 246, 889, 938, 1024, 1041
Hpy8I GTNNAC 3 cut(s) 336, 850, 903
HpyAV CCTTC 5 cut(s) 350, 385, 470, 481, 1047
HpyCH4III ACNGT 6 cut(s) 62, 98, 289, 600, 914, 976
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 7 cut(s) 10, 434, 470, 686, 782, 953, 962
HpyF10VI GCNNNNNNNGC 6 cut(s) 422, 431, 727, 740, 779, 959
HpyF3I CTNAG 2 cut(s) 635, 774
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 1 cut(s) 581
LmnI GCTCC 4 cut(s) 4, 194, 292, 421
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 1 cut(s) 443
MaeI CTAG 7 cut(s) 114, 219, 270, 692, 758, 827, 938
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 7 cut(s) 82, 479, 568, 706, 745, 970, 1012
MboII GAAGA 6 cut(s) 175, 398, 448, 516, 652, 908
MfeI CAATTG 2 cut(s) 344, 471
MlsI TGGCCA 1 cut(s) 715
MluCI AATT 7 cut(s) 40, 117, 318, 344, 362, 471, 893
MluNI TGGCCA 1 cut(s) 715
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 2 cut(s) 216, 958
Mox20I TGGCCA 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 121
MscI TGGCCA 1 cut(s) 715
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 715
MspA1I CMGCKG 1 cut(s) 865
MspI CCGG 2 cut(s) 143, 1046
MspR9I CCNGG 2 cut(s) 144, 712
MunI CAATTG 2 cut(s) 344, 471
MvaI CCWGG 1 cut(s) 712
MwoI GCNNNNNNNGC 6 cut(s) 422, 431, 727, 740, 779, 959
NciI CCSGG 1 cut(s) 144
NlaIII CATG 1 cut(s) 581
NlaIV GGNNCC 2 cut(s) 294, 982
NmuCI GTSAC 3 cut(s) 568, 970, 1012
OliI CACNNNNGTG 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 28, 257
PflMI CCANNNNNTGG 1 cut(s) 722
PinAI ACCGGT 1 cut(s) 1045
PkrI GCNGC 2 cut(s) 9, 772
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 710
PspGI CCWGG 1 cut(s) 710
PspN4I GGNNCC 2 cut(s) 294, 982
PspPI GGNCC 1 cut(s) 588
PstNI CAGNNNCTG 1 cut(s) 533
PvuII CAGCTG 1 cut(s) 865
RsaI GTAC 4 cut(s) 112, 607, 795, 1061
RsaNI GTAC 4 cut(s) 111, 606, 794, 1060
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 2 cut(s) 8, 771
Sau96I GGNCC 1 cut(s) 588
ScaI AGTACT 1 cut(s) 1061
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 144, 712
SfaNI GCATC 1 cut(s) 443
SfcI CTRYAG 1 cut(s) 596
Sfr274I CTCGAG 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 244, 1024
SmoI CTYRAG 2 cut(s) 244, 1024
Sse9I AATT 7 cut(s) 40, 117, 318, 344, 362, 471, 893
SsiI CCGC 3 cut(s) 33, 449, 948
SspMI CTAG 7 cut(s) 114, 219, 270, 692, 758, 827, 938
StyD4I CCNGG 2 cut(s) 142, 710
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 6 cut(s) 62, 98, 289, 600, 914, 976
TaiI ACGT 1 cut(s) 267
TaqI TCGA 2 cut(s) 245, 381
TasI AATT 7 cut(s) 40, 117, 318, 344, 362, 471, 893
TatI WGTACW 2 cut(s) 605, 1059
TfiI GAWTC 2 cut(s) 28, 257
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 3 cut(s) 577, 723, 979
TseFI GTSAC 3 cut(s) 568, 970, 1012
TseI GCWGC 2 cut(s) 7, 770
Tsp45I GTSAC 3 cut(s) 568, 970, 1012
TspDTI ATGAA 4 cut(s) 399, 448, 507, 923
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 3 cut(s) 577, 723, 979
Van91I CCANNNNNTGG 1 cut(s) 722
XapI RAATTY 1 cut(s) 40
XbaI TCTAGA 1 cut(s) 937
XhoI CTCGAG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 7 cut(s) 114, 219, 270, 692, 758, 827, 938
ZrmI AGTACT 1 cut(s) 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.