Rorug06G0294300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009433
Physical Location & Seq
Reverse (-)
44647730 .. 44648435
706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0294300.1

Sequence Viewer

Length: 525 bp
ATGCCCGACTTTTCCAGCTTCGTACTTCCAGAGTTTACCCTGAATAATTCTCGTAGAACGAAGCACTCTATTGTGTTGTTAATCTTTTTGGCAATACTCCCAACCTTGAGTGGTCATGGAAATGCTGCCGAGAACAATATCCACGTGCCGGGTGTCAACAGGTGGTACGTGCACGTCGTCAATGGACTCGGGGGAGGTAGATGGCTCTTCGTTCATTGCCAGTCCAAAGACGACGATCTCGGAACTCATGATCTGGCAACAGGGATGGAGTTTTGGCGGACGTTCAAGACAAACTATTTCGGGCGCACGCTTTTCTGGTGCTACCTGCGGACCGACGAAGCCACCAACAAACAACATGCTGCTTTTGATGTGTTTTGGCATGAGAAGCACCATTTTTGGCTTTTGGATCATTGTGGCGATGAAGAAAGGAATTGCACCTGGACTGCAAAAGATGATGGGATTTACTTGAAAATCAATTCTAAAAATGTTGATGACTTTGTTCATAAATGGGAACCAGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.34

Weight (kDa)

6.28

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 57 - 170 5.2e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 333
AciI CCGC 2 cut(s) 277, 328
AclWI GGATC 1 cut(s) 414
AcvI CACGTG 1 cut(s) 145
AfaI GTAC 2 cut(s) 24, 167
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 2 cut(s) 286, 469
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 2 cut(s) 437, 514
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw21I GWGCWC 1 cut(s) 174
Alw44I GTGCAC 1 cut(s) 170
AlwI GGATC 1 cut(s) 414
Ama87I CYCGRG 1 cut(s) 188
ApaLI GTGCAC 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 125, 359
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 330
AsuC2I CCSGG 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 330
BaeGI GKGCMC 1 cut(s) 174
BbrPI CACGTG 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 112, 346
BccI CCATC 3 cut(s) 195, 259, 449
BciT130I CCWGG 2 cut(s) 439, 516
BcnI CCSGG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 333
BisI GCNGC 2 cut(s) 126, 360
BlsI GCNGC 2 cut(s) 127, 361
Bme1390I CCNGG 3 cut(s) 150, 439, 516
Bme18I GGWCC 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 3 cut(s) 150, 439, 516
BpuEI CTTGAG 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 150
BsaAI YACGTR 2 cut(s) 145, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 439, 516
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 174
BseXI GCAGC 2 cut(s) 112, 346
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 3 cut(s) 235, 250, 406
BspACI CCGC 2 cut(s) 277, 328
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 513
BspMI ACCTGC 1 cut(s) 333
BspPI GGATC 1 cut(s) 414
BspQI GCTCTTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 1 cut(s) 220
BssMI GATC 3 cut(s) 235, 250, 406
Bst2UI CCWGG 2 cut(s) 439, 516
Bst6I CTCTTC 1 cut(s) 212
BstBAI YACGTR 2 cut(s) 145, 169
BstC8I GCNNGC 1 cut(s) 308
BstF5I GGATG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 3 cut(s) 238, 253, 409
BstMBI GATC 3 cut(s) 235, 250, 406
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 2 cut(s) 439, 516
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 3 cut(s) 148, 437, 514
BstSLI GKGCMC 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 112, 346
BtgZI GCGATG 1 cut(s) 432
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 270
BveI ACCTGC 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 308
CciI TCATGA 1 cut(s) 247
CfoI GCGC 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 330
CpoI CGGWCCG 1 cut(s) 330
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 2 cut(s) 23, 166
CspI CGGWCCG 1 cut(s) 330
CviAII CATG 4 cut(s) 116, 248, 356, 380
CviJI RGCY 4 cut(s) 18, 205, 341, 400
CviKI_1 RGCY 4 cut(s) 18, 205, 341, 400
CviQI GTAC 2 cut(s) 23, 166
DpnI GATC 3 cut(s) 237, 252, 408
DpnII GATC 3 cut(s) 235, 250, 406
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
EciI GGCGGA 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 330
Eco72I CACGTG 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 437, 514
FaeI CATG 4 cut(s) 119, 251, 359, 383
FaiI YATR 5 cut(s) 117, 249, 357, 381, 504
FatI CATG 4 cut(s) 115, 247, 355, 379
Fnu4HI GCNGC 2 cut(s) 126, 360
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 126, 360
GlaI GCGC 1 cut(s) 305
GluI GCNGC 2 cut(s) 126, 360
HapII CCGG 1 cut(s) 149
HhaI GCGC 1 cut(s) 306
Hin1II CATG 4 cut(s) 119, 251, 359, 383
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 1 cut(s) 186
HpaII CCGG 1 cut(s) 149
Hpy166II GTNNAC 3 cut(s) 36, 157, 172
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 3 cut(s) 29, 248, 286
Hpy8I GTNNAC 3 cut(s) 36, 157, 172
Hpy99I CGWCG 3 cut(s) 179, 236, 338
HpyCH4IV ACGT 4 cut(s) 144, 168, 174, 281
HpyCH4V TGCA 3 cut(s) 172, 435, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpySE526I ACGT 4 cut(s) 144, 168, 174, 281
Hsp92II CATG 4 cut(s) 119, 251, 359, 383
HspAI GCGC 1 cut(s) 304
Kzo9I GATC 3 cut(s) 235, 250, 406
LguI GCTCTTC 1 cut(s) 212
Lsp1109I GCAGC 2 cut(s) 112, 346
MabI ACCWGGT 1 cut(s) 514
MaeII ACGT 4 cut(s) 144, 168, 174, 281
MalI GATC 3 cut(s) 237, 252, 408
MboI GATC 3 cut(s) 235, 250, 406
MboII GAAGA 2 cut(s) 199, 434
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 3 cut(s) 46, 430, 475
MlyI GAGTC 1 cut(s) 180
MnlI CCTC 1 cut(s) 188
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 120
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 3 cut(s) 150, 439, 516
MvaI CCWGG 2 cut(s) 439, 516
MwoI GCNNNNNNNGC 1 cut(s) 385
NciI CCSGG 1 cut(s) 150
NdeII GATC 3 cut(s) 235, 250, 406
NlaIII CATG 4 cut(s) 119, 251, 359, 383
NlaIV GGNNCC 1 cut(s) 513
NmeAIII GCCGAG 1 cut(s) 154
NspI RCATGY 1 cut(s) 359
PagI TCATGA 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PkrI GCNGC 2 cut(s) 127, 361
PleI GAGTC 1 cut(s) 180
PmaCI CACGTG 1 cut(s) 145
PmlI CACGTG 1 cut(s) 145
PpsI GAGTC 1 cut(s) 180
Ppu21I YACGTR 2 cut(s) 145, 169
Psp6I CCWGG 2 cut(s) 437, 514
PspCI CACGTG 1 cut(s) 145
PspGI CCWGG 2 cut(s) 437, 514
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 1 cut(s) 330
RsaI GTAC 2 cut(s) 24, 167
RsaNI GTAC 2 cut(s) 23, 166
RseI CAYNNNNRTG 1 cut(s) 120
Rsr2I CGGWCCG 1 cut(s) 330
RsrII CGGWCCG 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 2 cut(s) 126, 360
Sau3AI GATC 3 cut(s) 235, 250, 406
Sau96I GGNCC 1 cut(s) 330
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 3 cut(s) 150, 439, 516
SduI GDGCHC 1 cut(s) 174
SexAI ACCWGGT 1 cut(s) 514
SinI GGWCC 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 3 cut(s) 46, 430, 475
SsiI CCGC 2 cut(s) 277, 328
StyD4I CCNGG 3 cut(s) 148, 437, 514
TaiI ACGT 4 cut(s) 147, 171, 177, 284
TaqII GACCGA 1 cut(s) 347
TasI AATT 3 cut(s) 46, 430, 475
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TseI GCWGC 2 cut(s) 125, 359
TspDTI ATGAA 3 cut(s) 203, 435, 491
VneI GTGCAC 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 330
XceI RCATGY 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.