Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009433

Physical Location & Seq

Genomic Coordinates Reverse (-)

8940439 .. 8942831

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGCTGCAATCAGTTTGTCTTGGGATTCCCACCTCAAATTTCACTTTATCCAATAACCGAATATCCCCTCACCAAACTGTTACAGAAAACCACGGTAGGCGACTCCGTACTAGAATTGCTTCCAAATCGGAGAATGTTTCAGCTTATTTTGTGCCGGGATTAAATATGTTTGTGAAGAAGTCCTCAATGCTTTGCTTGAACAAAGGAGCTATTATGTGTGCCTCTAACCCTAGTCTGGATGGGAAGTTGGAGTTCTCGAGAGAGAAAGATTCTAACGTCCCTAGTAAGGCAACTGATGCGGTGGAGCCTTTTCGTGGCAAGTCGGGTTCAATTTCGTTTTGTGGGTTGACACACCAATTGGTAGAGGAAGGGAAATTGCTTTCAGCCCCGTTCGATGAAGAGAAGGGGTCGTTTCTTTGGTTTTTAGCCCCTGTTGCCTTGATTGCGTCGTTTATTTTTCCGCAGTTCTTCATTGGTAATGCAATTGAAGGTTACTTGAAGGACGAGGTTCTCGTAGAAATTGCAACTTCATTATCTTCAGAGGCTGTATTTTATGTGGGACTTGCGACATTTTTACTTGTCACTGACCATGTTCAGAGGCCCTATCTACAGTTCAGTACAAAGAGATGGGGTCTCATTACTGGCCTAAGAGGATACTTGACATCTGCTTTCTTCACATCGGGCTTCAAGGTGGTTGCACCTCTAGTCGCTGTTTATGTAACCTGGCCAGTGCTTGGCTTGACAGCCTTGGTTGCTGTTGCCCCCTTTCTAGTTGGTTGTGCTGCTCAGCTTGCATTTGAGAGGGTACTTGACAAGCGAGGGTCATCTTGTTGGCCTCTAGTTCCCATTATCTTTGAGGTTTACAGACTATATCAGCTGACAAAAGCTGATTACTTTATCAAGAAATTGATGTATACAATGAACGGTCTTCCTACATCCCCAGAACTTCTAGAGAAAAGCGGTGCATTATTTGCGATGGAGGTAACTGTCGGCACCCTTTGTGTGGTGTGCTTGTGGTCTCTGGTGACATTTCTCTTGAGGCTTTTTCCTTCCAGACCGGTAGCAGAGAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

39.68

Weight (kDa)

8.82

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48460 AT1G48460
fragaria_vesca	FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500
malus_domestica	MD00G1038500.v1.1
prunus_persica	Prupe.1G386100_v2.0.a1
pyrus_communis	pycom15g02990
rosa_chinensis	RchiOBHm_Chr6g0300231
rosa_laevigata	RLG00000011355
rosa_multiflora	Rmu_sc0001670.1_g000030
rosa_roxburghii	Rroxscaffold_7G00167990
rosa_rugosa	Rorug06G0294300 Rorug06G0294400
rosa_samantha	Rh6AG406500 Rh6BG414400 Rh6CG421600 Rh6DG407200
rosa_wichuraiana	Rw6G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	995
AccB7I	CCANNNNNTGG	1 cut(s)	737
AccI	GTMKAC	1 cut(s)	917
AciI	CCGC	3 cut(s)	302, 464, 963
AcoI	YGGCCR	1 cut(s)	728
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	4 cut(s)	112, 622, 810, 1076
AfiI	CCNNNNNNNGG	5 cut(s)	238, 289, 317, 737, 1006
AgeI	ACCGGT	1 cut(s)	1060
AgsI	TTSAA	5 cut(s)	202, 333, 491, 502, 691
AjnI	CCWGG	1 cut(s)	725
AluBI	AGCT	6 cut(s)	7, 146, 212, 793, 880, 890
AluI	AGCT	6 cut(s)	7, 146, 212, 793, 880, 890
Alw26I	GTCTC	2 cut(s)	641, 1026
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	4 cut(s)	602, 646, 728, 836
ApeKI	GCWGC	2 cut(s)	7, 785
ApoI	RAATTY	1 cut(s)	40
AsiGI	ACCGGT	1 cut(s)	1060
Asp700I	GAANNNNTTC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	603
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	65, 1039
AvaI	CYCGRG	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	995
BbsI	GAAGAC	1 cut(s)	923
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	3 cut(s)	236, 624, 973
BciT130I	CCWGG	1 cut(s)	727
BciVI	GTATCC	1 cut(s)	650
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	641, 1026
BfaI	CTAG	7 cut(s)	114, 234, 285, 707, 773, 842, 953
BfmI	CTRYAG	1 cut(s)	611
BfuI	GTATCC	1 cut(s)	650
BisI	GCNGC	2 cut(s)	8, 786
BlpI	GCTNAGC	1 cut(s)	789
BlsI	GCNGC	2 cut(s)	9, 787
BmcAI	AGTACT	1 cut(s)	1076
Bme1390I	CCNGG	2 cut(s)	159, 727
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	603
BmiI	GGNNCC	2 cut(s)	309, 997
BmrFI	CCNGG	2 cut(s)	159, 727
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	923
Bpu1102I	GCTNAGC	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	1060
BpuMI	CCSGG	1 cut(s)	159
BsaI	GGTCTC	2 cut(s)	641, 1026
BsaJI	CCNNGG	2 cut(s)	94, 750
BsaWI	WCCGGW	1 cut(s)	1060
Bsc4I	CCNNNNNNNGG	5 cut(s)	238, 289, 317, 737, 1006
Bse118I	RCCGGY	1 cut(s)	1060
Bse1I	ACTGG	2 cut(s)	649, 731
BseBI	CCWGG	1 cut(s)	727
BseDI	CCNNGG	2 cut(s)	94, 750
BseGI	GGATG	2 cut(s)	247, 938
BseLI	CCNNNNNNNGG	5 cut(s)	238, 289, 317, 737, 1006
BseMII	CTCAG	1 cut(s)	803
BseNI	ACTGG	2 cut(s)	649, 731
BseXI	GCAGC	1 cut(s)	772
BshFI	GGCC	4 cut(s)	604, 648, 730, 838
BshNI	GGYRCC	1 cut(s)	995
BshTI	ACCGGT	1 cut(s)	1060
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	158, 1061
BslFI	GGGAC	2 cut(s)	266, 576
BslI	CCNNNNNNNGG	5 cut(s)	238, 289, 317, 737, 1006
BsmAI	GTCTC	2 cut(s)	641, 1026
BsmFI	GGGAC	2 cut(s)	266, 576
BsnI	GGCC	4 cut(s)	604, 648, 730, 838
Bso31I	GGTCTC	2 cut(s)	641, 1026
BsoBI	CYCGRG	1 cut(s)	259
Bsp1720I	GCTNAGC	1 cut(s)	789
BspACI	CCGC	3 cut(s)	302, 464, 963
BspANI	GGCC	4 cut(s)	604, 648, 730, 838
BspCNI	CTCAG	1 cut(s)	802
BspLI	GGNNCC	2 cut(s)	309, 997
BspT107I	GGYRCC	1 cut(s)	995
BspTNI	GGTCTC	2 cut(s)	641, 1026
BsrFI	RCCGGY	1 cut(s)	1060
BsrI	ACTGG	2 cut(s)	649, 731
BssAI	RCCGGY	1 cut(s)	1060
BssECI	CCNNGG	2 cut(s)	94, 750
BssNAI	GTATAC	1 cut(s)	918
BssT1I	CCWWGG	1 cut(s)	750
Bst1107I	GTATAC	1 cut(s)	918
Bst2UI	CCWGG	1 cut(s)	727
Bst4CI	ACNGT	5 cut(s)	82, 98, 615, 929, 991
Bst6I	CTCTTC	1 cut(s)	396
BstAPI	GCANNNNNTGC	2 cut(s)	299, 974
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	2 cut(s)	650, 789
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	247, 938
BstMAI	GTCTC	2 cut(s)	641, 1026
BstMWI	GCNNNNNNNGC	6 cut(s)	299, 437, 446, 755, 794, 974
BstNI	CCWGG	1 cut(s)	727
BstSCI	CCNGG	2 cut(s)	157, 725
BstSFI	CTRYAG	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	1 cut(s)	923
BstZ17I	GTATAC	1 cut(s)	918
BsuI	GTATCC	1 cut(s)	650
BsuRI	GGCC	4 cut(s)	604, 648, 730, 838
BtgI	CCRYGG	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	992
BtsCI	GGATG	2 cut(s)	247, 938
BtsIMutI	CAGTG	2 cut(s)	585, 738
Cac8I	GCNNGC	1 cut(s)	795
CaiI	CAGNNNCTG	1 cut(s)	548
Cfr10I	RCCGGY	1 cut(s)	1060
Cfr13I	GGNCC	1 cut(s)	603
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	4 cut(s)	111, 621, 809, 1075
CspAI	ACCGGT	1 cut(s)	1060
CviAII	CATG	1 cut(s)	593
CviQI	GTAC	4 cut(s)	111, 621, 809, 1075
DdeI	CTNAG	2 cut(s)	650, 789
EaeI	YGGCCR	1 cut(s)	728
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	750
Eco31I	GGTCTC	2 cut(s)	641, 1026
Eco57I	CTGAAG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	1 cut(s)	596
FaiI	YATR	7 cut(s)	170, 218, 558, 594, 720, 874, 918
FaqI	GGGAC	2 cut(s)	266, 576
FatI	CATG	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	917
Fnu4HI	GCNGC	2 cut(s)	8, 786
FokI	GGATG	2 cut(s)	254, 925
Fsp4HI	GCNGC	2 cut(s)	8, 786
FspBI	CTAG	7 cut(s)	114, 234, 285, 707, 773, 842, 953
GluI	GCNGC	2 cut(s)	8, 786
HaeIII	GGCC	4 cut(s)	604, 648, 730, 838
HapII	CCGG	2 cut(s)	158, 1061
HgaI	GACGC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	596
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	3 cut(s)	28, 105, 272
HpaII	CCGG	2 cut(s)	158, 1061
HphI	GGTGA	2 cut(s)	65, 1039
Hpy166II	GTNNAC	3 cut(s)	351, 865, 918
Hpy188I	TCNGA	3 cut(s)	133, 544, 600
Hpy188III	TCNNGA	7 cut(s)	239, 259, 261, 904, 953, 1039, 1056
Hpy8I	GTNNAC	3 cut(s)	351, 865, 918
Hpy99I	CGWCG	1 cut(s)	454
HpyAV	CCTTC	5 cut(s)	365, 400, 485, 496, 1062
HpyCH4III	ACNGT	5 cut(s)	82, 98, 615, 929, 991
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	10, 485, 527, 701, 797, 968
HpyF10VI	GCNNNNNNNGC	6 cut(s)	299, 437, 446, 755, 794, 974
HpyF3I	CTNAG	2 cut(s)	650, 789
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	596
LmnI	GCTCC	3 cut(s)	4, 209, 307
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	7 cut(s)	114, 234, 285, 707, 773, 842, 953
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	6 cut(s)	82, 494, 583, 721, 985, 1027
MboII	GAAGA	6 cut(s)	190, 413, 463, 531, 667, 923
MfeI	CAATTG	2 cut(s)	359, 486
MlsI	TGGCCA	1 cut(s)	730
MluCI	AATT	8 cut(s)	40, 117, 333, 359, 377, 486, 522, 908
MluNI	TGGCCA	1 cut(s)	730
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	231
Mox20I	TGGCCA	1 cut(s)	730
MroXI	GAANNNNTTC	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	730
MseI	TTAA	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	730
MspA1I	CMGCKG	1 cut(s)	880
MspI	CCGG	2 cut(s)	158, 1061
MspR9I	CCNGG	2 cut(s)	159, 727
MunI	CAATTG	2 cut(s)	359, 486
MvaI	CCWGG	1 cut(s)	727
MwoI	GCNNNNNNNGC	6 cut(s)	299, 437, 446, 755, 794, 974
NciI	CCSGG	1 cut(s)	159
NlaIII	CATG	1 cut(s)	596
NlaIV	GGNNCC	2 cut(s)	309, 997
NmuCI	GTSAC	2 cut(s)	583, 1027
PaeR7I	CTCGAG	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	28, 272
PflMI	CCANNNNNTGG	1 cut(s)	737
PinAI	ACCGGT	1 cut(s)	1060
PkrI	GCNGC	2 cut(s)	9, 787
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	725
PspN4I	GGNNCC	2 cut(s)	309, 997
PspPI	GGNCC	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	880
RsaI	GTAC	4 cut(s)	112, 622, 810, 1076
RsaNI	GTAC	4 cut(s)	111, 621, 809, 1075
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	2 cut(s)	8, 786
Sau96I	GGNCC	1 cut(s)	603
ScaI	AGTACT	1 cut(s)	1076
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	159, 727
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	611
Sfr274I	CTCGAG	1 cut(s)	259
SlaI	CTCGAG	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	259, 1039
SmoI	CTYRAG	2 cut(s)	259, 1039
Sse9I	AATT	8 cut(s)	40, 117, 333, 359, 377, 486, 522, 908
SsiI	CCGC	3 cut(s)	302, 464, 963
SspMI	CTAG	7 cut(s)	114, 234, 285, 707, 773, 842, 953
StyD4I	CCNGG	2 cut(s)	157, 725
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	5 cut(s)	82, 98, 615, 929, 991
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	260, 396
TasI	AATT	8 cut(s)	40, 117, 333, 359, 377, 486, 522, 908
TatI	WGTACW	2 cut(s)	620, 1074
TfiI	GAWTC	2 cut(s)	28, 272
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	2 cut(s)	592, 738
TseFI	GTSAC	2 cut(s)	583, 1027
TseI	GCWGC	2 cut(s)	7, 785
Tsp45I	GTSAC	2 cut(s)	583, 1027
TspDTI	ATGAA	4 cut(s)	414, 463, 522, 938
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	592, 738
Van91I	CCANNNNNTGG	1 cut(s)	737
XapI	RAATTY	1 cut(s)	40
XbaI	TCTAGA	1 cut(s)	952
XhoI	CTCGAG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	7 cut(s)	114, 234, 285, 707, 773, 842, 953
ZrmI	AGTACT	1 cut(s)	1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.