Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009433

Physical Location & Seq

Genomic Coordinates Reverse (-)

1841040 .. 1843709

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAAGTGGTTTAAGCCGATTAATACAAAAACAAAATACAAAGCAGGGAAACTCTGCTTAAACCCTAAATCCCCAAAAATGGAGGTGCAATCAATCTGTCGCGGGATTCCCACTTCAAATTTGGGTTTCTCCAACCACCGCATACTCCCTCCTCAGATCGTTTTCGCAGGCCACGCCGGGCGGAGGGATGAAAAGCTCTACCGTAGCGGAATTTCTTCCAATTCATATTTGAACAGAGGAGCTATTAAATGTGTTTCAAATTCTAGTCGGCATGCGAAGTTGGAATTCTCAGGAGGGGATAGTTCTAATGTTCCTGTTAAAAAAATTGATGGGGTGGAGCCTTTTCGGGGTAAATCGGGTTCGATTTCGTTCTACGGTTTGACACACCAGTTGGCAGAGGAAGGGAAATTGATTTCGGCCCCTTTTGATGAAGAGAAGGGCTCGTTTATTTGGTTTATCGCCCCTGTTGCTTTGATTTCATCGTTGATTCTTCCACAGTTCTTCATTGGTAATGCAGTTGAGGCCTTCTTGAAGGACGAGACTATCGTAGAAATTGTGACTTCATTATCATACGAGGCTCTATTTTATGTGGGTCTTGCAATATTCCTGCTTGTAACTGATAGAGTGCAAAGGCCCTATCTGCAGTTCAGTCCAAAGAGATGGGGTCTCATTACCGGCCTAAGAGGATACTTGACATCTGCTTTCCTCACCACGGGATTCAAAGTGATGGCTCCTCTGTTTGCTGTTTATGTAACCTGGCCATTGCTTGGCTTTCCGGCCTTGATTTCTGTCATTCCCTTTCTAGTTGGCTGTGTTGCTCAACTTGCATTTGAGACGGTTCTTGAAAAGCGTCAGTCATCTTGCTGGCCTCTAGTTCCCATTATTTTCGAGGTTTATCGACTATATCAGTTGACAAAAGCTACTTCCTTTATCCAGAATTTGATGTTTGCCATGAACGGTCTTCCTACATCCCCCGAACTGCTAGAAAAAAGCGGTGCACTTTTTGCTATGATGGTAACCTTCCGAGTCGTCAGCCTAGTGTGCCTCTGGTCGCTGACGACATTTCTTTTGAGGCTGTTTCCTTCCAGACCCGTTGCAGAGAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

41.19

Weight (kDa)

9.61

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48460 AT1G48460
fragaria_vesca	FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500 FvH4_2g40500
malus_domestica	MD00G1038500.v1.1
prunus_persica	Prupe.1G386100_v2.0.a1
pyrus_communis	pycom15g02990
rosa_chinensis	RchiOBHm_Chr6g0300231
rosa_laevigata	RLG00000011355
rosa_multiflora	Rmu_sc0001670.1_g000030
rosa_roxburghii	Rroxscaffold_7G00167990
rosa_rugosa	Rorug06G0294300 Rorug06G0294400
rosa_samantha	Rh6AG406500 Rh6BG414400 Rh6CG421600 Rh6DG407200
rosa_wichuraiana	Rw6G035570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	767
AccII	CGCG	1 cut(s)	102
AciI	CCGC	5 cut(s)	102, 139, 181, 207, 993
AcoI	YGGCCR	1 cut(s)	758
AcsI	RAATTY	5 cut(s)	118, 210, 259, 284, 937
AfiI	CCNNNNNNNGG	5 cut(s)	79, 183, 347, 712, 767
AgsI	TTSAA	6 cut(s)	117, 232, 258, 532, 721, 845
AjnI	CCWGG	1 cut(s)	755
AluBI	AGCT	3 cut(s)	196, 242, 920
AluI	AGCT	3 cut(s)	196, 242, 920
Alw21I	GWGCWC	1 cut(s)	1000
Alw26I	GTCTC	3 cut(s)	533, 671, 827
Alw44I	GTGCAC	1 cut(s)	996
AoxI	GGCC	8 cut(s)	169, 417, 522, 632, 676, 758, 777, 866
ApaLI	GTGCAC	1 cut(s)	996
ApoI	RAATTY	5 cut(s)	118, 210, 259, 284, 937
ArsI	GACNNNNNNTTYG	2 cut(s)	1051, 1083
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	418, 633
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	700
BaeGI	GKGCMC	1 cut(s)	1000
BalI	TGGCCA	1 cut(s)	760
BanII	GRGCYC	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	953
Bbv12I	GWGCWC	1 cut(s)	1000
BccI	CCATC	4 cut(s)	323, 654, 721, 1006
BciT130I	CCWGG	1 cut(s)	757
BciVI	GTATCC	1 cut(s)	680
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	3 cut(s)	533, 671, 827
BfaI	CTAG	5 cut(s)	264, 803, 872, 983, 1037
BfmI	CTRYAG	1 cut(s)	641
BfuI	GTATCC	1 cut(s)	680
Bme1390I	CCNGG	2 cut(s)	178, 757
BmgT120I	GGNCC	2 cut(s)	418, 633
BmiI	GGNNCC	3 cut(s)	339, 420, 732
BmrFI	CCNGG	2 cut(s)	178, 757
BpiI	GAAGAC	1 cut(s)	953
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpuMI	CCSGG	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	671
BsaJI	CCNNGG	1 cut(s)	711
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 183, 347, 712, 767
Bse118I	RCCGGY	1 cut(s)	674
Bse1I	ACTGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	761
BseBI	CCWGG	1 cut(s)	757
BseDI	CCNNGG	1 cut(s)	711
BseGI	GGATG	2 cut(s)	193, 968
BseLI	CCNNNNNNNGG	5 cut(s)	79, 183, 347, 712, 767
BseMI	GCAATG	1 cut(s)	761
BseMII	CTCAG	2 cut(s)	167, 303
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	3 cut(s)	141, 252, 723
BseSI	GKGCMC	1 cut(s)	1000
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	8 cut(s)	171, 419, 524, 634, 678, 760, 779, 868
BsiHKAI	GWGCWC	1 cut(s)	1000
BsiSI	CCGG	3 cut(s)	177, 675, 776
BslI	CCNNNNNNNGG	5 cut(s)	79, 183, 347, 712, 767
BsmAI	GTCTC	3 cut(s)	533, 671, 827
BsmBI	CGTCTC	1 cut(s)	827
BsnI	GGCC	8 cut(s)	171, 419, 524, 634, 678, 760, 779, 868
Bso31I	GGTCTC	1 cut(s)	671
Bsp1286I	GDGCHC	2 cut(s)	443, 1000
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	5 cut(s)	102, 139, 181, 207, 993
BspANI	GGCC	8 cut(s)	171, 419, 524, 634, 678, 760, 779, 868
BspCNI	CTCAG	2 cut(s)	166, 302
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	339, 420, 732
BspMAI	CTGCAG	1 cut(s)	645
BspTNI	GGTCTC	1 cut(s)	671
BsrDI	GCAATG	1 cut(s)	761
BsrFI	RCCGGY	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	1 cut(s)	674
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	5 cut(s)	203, 377, 498, 838, 959
Bst6I	CTCTTC	1 cut(s)	426
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstC8I	GCNNGC	3 cut(s)	169, 273, 866
BstDEI	CTNAG	3 cut(s)	153, 289, 680
BstDSI	CCRYGG	1 cut(s)	711
BstEII	GGTNACC	1 cut(s)	1015
BstF5I	GGATG	2 cut(s)	193, 968
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	3 cut(s)	533, 671, 827
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	7 cut(s)	173, 467, 521, 640, 824, 1004, 1041
BstNI	CCWGG	1 cut(s)	757
BstNSI	RCATGY	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	1015
BstSCI	CCNGG	2 cut(s)	176, 755
BstSFI	CTRYAG	1 cut(s)	641
BstSLI	GKGCMC	1 cut(s)	1000
BstUI	CGCG	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	953
BstXI	CCANNNNNNTGG	1 cut(s)	660
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	8 cut(s)	171, 419, 524, 634, 678, 760, 779, 868
BtgI	CCRYGG	1 cut(s)	711
BtsCI	GGATG	2 cut(s)	193, 968
Cac8I	GCNNGC	3 cut(s)	169, 273, 866
Cfr10I	RCCGGY	1 cut(s)	674
Cfr13I	GGNCC	2 cut(s)	418, 633
CseI	GACGC	1 cut(s)	839
CviAII	CATG	2 cut(s)	272, 952
DdeI	CTNAG	3 cut(s)	153, 289, 680
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	758
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	196
Eco147I	AGGCCT	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	671
Eco91I	GGTNACC	1 cut(s)	1015
EcoO109I	RGGNCCY	1 cut(s)	633
EcoO65I	GGTNACC	1 cut(s)	1015
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	755
EcoT38I	GRGCYC	1 cut(s)	443
Esp3I	CGTCTC	1 cut(s)	827
FaeI	CATG	2 cut(s)	275, 955
FaiI	YATR	9 cut(s)	143, 226, 273, 571, 588, 750, 904, 953, 1010
FatI	CATG	2 cut(s)	271, 951
FauI	CCCGC	1 cut(s)	95
FokI	GGATG	2 cut(s)	200, 955
FriOI	GRGCYC	1 cut(s)	443
FspBI	CTAG	5 cut(s)	264, 803, 872, 983, 1037
HaeIII	GGCC	8 cut(s)	171, 419, 524, 634, 678, 760, 779, 868
HapII	CCGG	3 cut(s)	177, 675, 776
HgaI	GACGC	1 cut(s)	839
Hin1II	CATG	2 cut(s)	275, 955
HincII	GTYRAC	1 cut(s)	912
HindII	GTYRAC	1 cut(s)	912
HinfI	GANTC	4 cut(s)	106, 487, 717, 1026
HpaII	CCGG	3 cut(s)	177, 675, 776
HphI	GGTGA	1 cut(s)	700
Hpy166II	GTNNAC	2 cut(s)	912, 998
Hpy188I	TCNGA	2 cut(s)	156, 1025
Hpy188III	TCNNGA	5 cut(s)	291, 529, 842, 934, 1086
Hpy8I	GTNNAC	2 cut(s)	912, 998
HpyAV	CCTTC	6 cut(s)	395, 430, 526, 535, 1030, 1092
HpyCH4III	ACNGT	5 cut(s)	203, 377, 498, 838, 959
HpyCH4V	TGCA	8 cut(s)	88, 515, 599, 628, 643, 827, 998, 1097
HpyF10VI	GCNNNNNNNGC	7 cut(s)	173, 467, 521, 640, 824, 1004, 1041
HpyF3I	CTNAG	3 cut(s)	153, 289, 680
Hsp92II	CATG	2 cut(s)	275, 955
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	3 cut(s)	239, 337, 736
MaeI	CTAG	5 cut(s)	264, 803, 872, 983, 1037
MaeIII	GTNAC	4 cut(s)	556, 613, 751, 1015
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	5 cut(s)	207, 443, 482, 493, 953
MhlI	GDGCHC	2 cut(s)	443, 1000
MlsI	TGGCCA	1 cut(s)	760
MluCI	AATT	9 cut(s)	118, 210, 220, 259, 284, 324, 407, 552, 937
MluNI	TGGCCA	1 cut(s)	760
MlyI	GAGTC	1 cut(s)	1035
MmeI	TCCRAC	2 cut(s)	156, 261
Mox20I	TGGCCA	1 cut(s)	760
MroXI	GAANNNNTTC	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	760
MseI	TTAA	5 cut(s)	12, 21, 59, 246, 318
Msp20I	TGGCCA	1 cut(s)	760
MspI	CCGG	3 cut(s)	177, 675, 776
MspR9I	CCNGG	2 cut(s)	178, 757
MvaI	CCWGG	1 cut(s)	757
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	7 cut(s)	173, 467, 521, 640, 824, 1004, 1041
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	275, 955
NlaIV	GGNNCC	3 cut(s)	339, 420, 732
NmuCI	GTSAC	1 cut(s)	556
NspI	RCATGY	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	106, 487, 717
PflMI	CCANNNNNTGG	1 cut(s)	767
PleI	GAGTC	1 cut(s)	1034
PpsI	GAGTC	1 cut(s)	1034
PshBI	ATTAAT	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	755
PspEI	GGTNACC	1 cut(s)	1015
PspGI	CCWGG	1 cut(s)	755
PspN4I	GGNNCC	3 cut(s)	339, 420, 732
PspPI	GGNCC	2 cut(s)	418, 633
PsrI	GAACNNNNNNTAC	2 cut(s)	343, 375
PstI	CTGCAG	1 cut(s)	645
SaqAI	TTAA	5 cut(s)	12, 21, 59, 246, 318
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	2 cut(s)	418, 633
SchI	GAGTC	1 cut(s)	1035
ScrFI	CCNGG	2 cut(s)	178, 757
SduI	GDGCHC	2 cut(s)	443, 1000
SetI	ASST	7 cut(s)	87, 198, 244, 758, 894, 922, 1022
SfcI	CTRYAG	1 cut(s)	641
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	9 cut(s)	118, 210, 220, 259, 284, 324, 407, 552, 937
SseBI	AGGCCT	1 cut(s)	524
SsiI	CCGC	5 cut(s)	102, 139, 181, 207, 993
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	5 cut(s)	264, 803, 872, 983, 1037
StuI	AGGCCT	1 cut(s)	524
StyD4I	CCNGG	2 cut(s)	176, 755
TaaI	ACNGT	5 cut(s)	203, 377, 498, 838, 959
TaqI	TCGA	3 cut(s)	362, 888, 898
TasI	AATT	9 cut(s)	118, 210, 220, 259, 284, 324, 407, 552, 937
TfiI	GAWTC	3 cut(s)	106, 487, 717
Tru1I	TTAA	5 cut(s)	12, 21, 59, 246, 318
Tru9I	TTAA	5 cut(s)	12, 21, 59, 246, 318
TseFI	GTSAC	1 cut(s)	556
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	8 cut(s)	17, 204, 213, 444, 468, 493, 552, 968
Van91I	CCANNNNNTGG	1 cut(s)	767
VneI	GTGCAC	1 cut(s)	996
VspI	ATTAAT	1 cut(s)	21
XapI	RAATTY	5 cut(s)	118, 210, 259, 284, 937
XceI	RCATGY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	5 cut(s)	264, 803, 872, 983, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.