AT1G48990

glycine-rich protein oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015955
Physical Location & Seq
Forward (+)
18121434 .. 18122155
722 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48990.1

Sequence Viewer

Length: 510 bp
ATGGCTGATCGAACAAACCCTAGCAGCCACACCCAACAGAGACCCATCTATAACTCAACCACCGTCCCTCGCAGCAACACCACCACCAACCACCCCCTCTCATCTCTTCTCCGTCAGCTACTACAATCGCAGTCTCCTAATCACTCCGGTCAACTCTTCGGCTTCCTCGCATTCTTCATCTCCGGTGGAATACTCCTTTTACTCACCGGAATCACTGTCACCGCTTTCGTCCTTGGATTCATTGCTTTTCTCCCACTCATCATTATCTCAAGCCCTATTTGGATCCCTTTGTTCCTTATCGTAACCGGATTCTTGTCCCTCGCTGGACTCATCTTGGCTACAGGGGCTGTTGTGTCGTGGTTGTATCGATATTTTAAAGGCATGCATCCATTAAGGTCGGATCAGGTTGATTATGCTCGGAGTCGAATTCATGACACGGCGGCTCATGTCAAAGATTATGCTGGTGGGTACTTCCATGGTACGCTGAAAGATGCAGCACCTGGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

169

Amino Acids

18.44

Weight (kDa)

9.89

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 51 - 155 1.9e-33 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 222, 440
AclWI GGATC 3 cut(s) 277, 290, 408
AcsI RAATTY 1 cut(s) 426
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 2 cut(s) 470, 481
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 2 cut(s) 34, 138
AlwI GGATC 3 cut(s) 277, 290, 408
AlwNI CAGNNNCTG 2 cut(s) 347, 500
ApeKI GCWGC 3 cut(s) 24, 72, 494
ApoI RAATTY 1 cut(s) 426
AsuHPI GGTGA 2 cut(s) 196, 211
BamHI GGATCC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 36, 84, 506
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 34, 138
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 4 cut(s) 25, 73, 441, 495
BlsI GCNGC 4 cut(s) 26, 74, 442, 496
Bme1390I CCNGG 1 cut(s) 501
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 394, 481
BpuEI CTTGAG 1 cut(s) 253
Bsa29I ATCGAT 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 232, 475
BsaWI WCCGGW 4 cut(s) 146, 182, 206, 305
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 501
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 2 cut(s) 232, 475
BseGI GGATG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 36, 84, 506
BshVI ATCGAT 1 cut(s) 367
BsiSI CCGG 4 cut(s) 147, 183, 207, 306
BslFI GGGAC 2 cut(s) 50, 301
BsmAI GTCTC 2 cut(s) 34, 138
BsmFI GGGAC 2 cut(s) 50, 301
BsmI GAATGC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 34
Bsp143I GATC 3 cut(s) 7, 282, 400
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 2 cut(s) 222, 440
BspDI ATCGAT 1 cut(s) 367
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 284
BspPI GGATC 3 cut(s) 277, 290, 408
BspTNI GGTCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 232, 475
BssMI GATC 3 cut(s) 7, 282, 400
BssT1I CCWWGG 2 cut(s) 232, 475
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 64, 217
Bst6I CTCTTC 2 cut(s) 111, 161
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 383
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 3 cut(s) 10, 285, 403
BstMAI GTCTC 2 cut(s) 34, 138
BstMBI GATC 3 cut(s) 7, 282, 400
BstMWI GCNNNNNNNGC 2 cut(s) 344, 503
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 36, 84, 506
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 367
BsuTUI ATCGAT 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 383
CaiI CAGNNNCTG 2 cut(s) 347, 500
CciI TCATGA 1 cut(s) 430
ClaI ATCGAT 1 cut(s) 367
CsiI ACCWGGT 1 cut(s) 499
Csp6I GTAC 2 cut(s) 469, 480
CviAII CATG 5 cut(s) 382, 431, 446, 476, 507
CviJI RGCY 8 cut(s) 5, 27, 118, 162, 273, 338, 347, 443
CviKI_1 RGCY 8 cut(s) 5, 27, 118, 162, 273, 338, 347, 443
CviQI GTAC 2 cut(s) 469, 480
DpnI GATC 3 cut(s) 9, 284, 402
DpnII GATC 3 cut(s) 7, 282, 400
DraI TTTAAA 1 cut(s) 376
DraIII CACNNNGTG 1 cut(s) 503
Eam1104I CTCTTC 2 cut(s) 111, 161
EarI CTCTTC 2 cut(s) 111, 161
Eco130I CCWWGG 2 cut(s) 232, 475
Eco31I GGTCTC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 232, 475
EcoT22I ATGCAT 1 cut(s) 387
ErhI CCWWGG 2 cut(s) 232, 475
FaeI CATG 5 cut(s) 385, 434, 449, 479, 510
FaiI YATR 8 cut(s) 51, 383, 414, 432, 447, 459, 477, 508
FaqI GGGAC 2 cut(s) 50, 301
FatI CATG 5 cut(s) 381, 430, 445, 475, 506
Fnu4HI GCNGC 4 cut(s) 25, 73, 441, 495
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 4 cut(s) 25, 73, 441, 495
FspBI CTAG 1 cut(s) 21
GluI GCNGC 4 cut(s) 25, 73, 441, 495
HapII CCGG 4 cut(s) 147, 183, 207, 306
Hin1II CATG 5 cut(s) 385, 434, 449, 479, 510
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HinfI GANTC 5 cut(s) 210, 237, 309, 327, 421
HpaII CCGG 4 cut(s) 147, 183, 207, 306
HphI GGTGA 2 cut(s) 196, 211
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 400, 420
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 64, 217
HpyCH4V TGCA 3 cut(s) 385, 494, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 503
Hsp92II CATG 5 cut(s) 385, 434, 449, 479, 510
Kzo9I GATC 3 cut(s) 7, 282, 400
LpnPI CCDG 9 cut(s) 160, 196, 220, 309, 319, 327, 389, 447, 486
Lsp1109I GCAGC 3 cut(s) 36, 84, 506
LweI GCATC 2 cut(s) 394, 481
MabI ACCWGGT 1 cut(s) 499
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 217, 301
MalI GATC 3 cut(s) 9, 284, 402
MboI GATC 3 cut(s) 7, 282, 400
MboII GAAGA 3 cut(s) 98, 148, 166
MflI RGATCY 1 cut(s) 282
MluCI AATT 1 cut(s) 426
MlyI GAGTC 2 cut(s) 321, 430
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 4 cut(s) 78, 107, 176, 329
Mph1103I ATGCAT 1 cut(s) 387
MseI TTAA 2 cut(s) 375, 392
MspI CCGG 4 cut(s) 147, 183, 207, 306
MspR9I CCNGG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 2 cut(s) 344, 503
NcoI CCATGG 1 cut(s) 475
NdeII GATC 3 cut(s) 7, 282, 400
NlaIII CATG 5 cut(s) 385, 434, 449, 479, 510
NlaIV GGNNCC 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 387
NspI RCATGY 1 cut(s) 385
PaeI GCATGC 1 cut(s) 385
PagI TCATGA 1 cut(s) 430
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 3 cut(s) 210, 237, 309
PkrI GCNGC 4 cut(s) 26, 74, 442, 496
PleI GAGTC 2 cut(s) 321, 429
PpsI GAGTC 2 cut(s) 321, 429
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 1 cut(s) 284
PstNI CAGNNNCTG 2 cut(s) 347, 500
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 2 cut(s) 470, 481
RsaNI GTAC 2 cut(s) 469, 480
SaqAI TTAA 2 cut(s) 375, 392
SatI GCNGC 4 cut(s) 25, 73, 441, 495
Sau3AI GATC 3 cut(s) 7, 282, 400
SchI GAGTC 2 cut(s) 321, 430
ScrFI CCNGG 1 cut(s) 501
SetI ASST 4 cut(s) 120, 398, 408, 502
SexAI ACCWGGT 1 cut(s) 499
SfaNI GCATC 2 cut(s) 394, 481
SfcI CTRYAG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SphI GCATGC 1 cut(s) 385
Sse9I AATT 1 cut(s) 426
SsiI CCGC 2 cut(s) 222, 440
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 2 cut(s) 232, 475
TaaI ACNGT 2 cut(s) 64, 217
TaqI TCGA 3 cut(s) 10, 367, 424
TasI AATT 1 cut(s) 426
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 3 cut(s) 210, 237, 309
Tru1I TTAA 2 cut(s) 375, 392
Tru9I TTAA 2 cut(s) 375, 392
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 3 cut(s) 24, 72, 494
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 166, 229, 419
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 220
XapI RAATTY 1 cut(s) 426
XceI RCATGY 1 cut(s) 385
XspI CTAG 1 cut(s) 21
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.