MD06G1210400.v1.1

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015955
Physical Location & Seq
Forward (+)
34328282 .. 34328914
633 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1210400.v1.1.491

Sequence Viewer

Length: 633 bp
ATGTCTCCATGCTCAAATCTTCCCCACACCTGTCCCTCTCCACCCCCTCTTAACATCTCCCGCACCTCTCTCTCACTCCCCCTCCCCCTCCTCTCTCTCTCTCTCTCTTTCAACGCATCCATGGCCGACCGTCACCAAAACCCAGCACAAACCCAGCAGCAGCAGAGAGCTCCGAGACACAGCAACCATAACACCCCGACAAATGCCTCCACATTCCTACGTAAACTCCAAGGTAGTGCACCCAACTCTACCCAGCTCGTCGGCTTCCTCACCCTCCTCGTCTCCGGCGCCATTCTCCTCCTCCTCACCGGCCTCACCGTCACCGCAACCGTCCTCGGAGTAATGTTCTTCACCCCTCTCATCATCGTCTCCAGTCCCATATGGGTCCCCCTTGGCATCATCCTCGTCCTCACTGCCGGCTTCTTCGTGTCCATGTGCGGGTTCGGCGCCGCAGCCGTGGCCGGTTTGTCTTGGATGTACAGGTACTTCAAGGGGATGCACCCGCCCGGTTCGGACCGGGTCGACTACGCAAGGAGCCGGATTTACGATACGGCGAGCCACGTCAAGGATTATGCTAGAGAGTATGGCGGATATTTACACAGTAAGGTCAAGGATGCAGCTCCCGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

211

Amino Acids

22.6

Weight (kDa)

9.76

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 84 - 196 5.1e-44 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 287, 446
AccI GTMKAC 1 cut(s) 522
AciI CCGC 6 cut(s) 61, 324, 438, 450, 503, 588
AcoI YGGCCR 2 cut(s) 123, 459
AcyI GRCGYC 2 cut(s) 288, 447
AfaI GTAC 2 cut(s) 479, 485
AfiI CCNNNNNNNGG 2 cut(s) 438, 565
AgsI TTSAA 2 cut(s) 112, 490
AjiI CACGTC 1 cut(s) 562
AluBI AGCT 3 cut(s) 170, 256, 620
AluI AGCT 3 cut(s) 170, 256, 620
Alw21I GWGCWC 2 cut(s) 172, 241
Alw26I GTCTC 4 cut(s) 9, 169, 286, 373
Alw44I GTGCAC 1 cut(s) 237
AoxI GGCC 3 cut(s) 123, 310, 459
ApaLI GTGCAC 1 cut(s) 237
ApeKI GCWGC 4 cut(s) 157, 160, 452, 617
AspLEI GCGC 2 cut(s) 290, 449
AspS9I GGNCC 2 cut(s) 385, 514
AsuC2I CCSGG 3 cut(s) 507, 518, 624
AsuHPI GGTGA 6 cut(s) 125, 262, 298, 307, 313, 343
AvaII GGWCC 2 cut(s) 385, 514
BaeGI GKGCMC 1 cut(s) 241
BanI GGYRCC 2 cut(s) 287, 446
BanII GRGCYC 1 cut(s) 172
BarI GAAGNNNNNNTAC 2 cut(s) 470, 502
Bbv12I GWGCWC 2 cut(s) 172, 241
BbvI GCAGC 4 cut(s) 169, 172, 464, 629
BceAI ACGGC 2 cut(s) 440, 567
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BcnI CCSGG 3 cut(s) 507, 518, 624
BcoDI GTCTC 4 cut(s) 9, 169, 286, 373
BfaI CTAG 1 cut(s) 576
BfoI RGCGCY 2 cut(s) 291, 450
BisI GCNGC 5 cut(s) 158, 161, 450, 453, 618
BlsI GCNGC 5 cut(s) 159, 162, 451, 454, 619
Bme1390I CCNGG 3 cut(s) 507, 518, 624
Bme18I GGWCC 2 cut(s) 385, 514
BmgBI CACGTC 1 cut(s) 562
BmgT120I GGNCC 2 cut(s) 385, 514
BmiI GGNNCC 5 cut(s) 289, 386, 387, 448, 536
BmrFI CCNGG 3 cut(s) 507, 518, 624
BmsI GCATC 4 cut(s) 125, 405, 486, 604
BpmI CTGGAG 1 cut(s) 355
BpuMI CCSGG 3 cut(s) 507, 518, 624
BsaAI YACGTR 1 cut(s) 221
BsaHI GRCGYC 2 cut(s) 288, 447
BsaJI CCNNGG 5 cut(s) 120, 229, 334, 391, 456
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 210, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 438, 565
Bse118I RCCGGY 3 cut(s) 308, 416, 461
Bse1I ACTGG 1 cut(s) 372
BseDI CCNNGG 5 cut(s) 120, 229, 334, 391, 456
BseGI GGATG 5 cut(s) 116, 399, 480, 501, 619
BseLI CCNNNNNNNGG 2 cut(s) 438, 565
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 5 cut(s) 80, 266, 287, 290, 293
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 4 cut(s) 169, 172, 464, 629
BseYI CCCAGC 3 cut(s) 142, 153, 252
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 3 cut(s) 125, 312, 461
BshNI GGYRCC 2 cut(s) 287, 446
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 2 cut(s) 172, 241
BsiSI CCGG 8 cut(s) 285, 309, 417, 462, 507, 517, 538, 624
BslFI GGGAC 3 cut(s) 18, 360, 371
BslI CCNNNNNNNGG 2 cut(s) 438, 565
BsmAI GTCTC 4 cut(s) 9, 169, 286, 373
BsmBI CGTCTC 2 cut(s) 286, 373
BsmFI GGGAC 3 cut(s) 18, 360, 371
BsnI GGCC 3 cut(s) 125, 312, 461
Bsp1286I GDGCHC 2 cut(s) 172, 241
Bsp1407I TGTACA 1 cut(s) 477
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 6 cut(s) 61, 324, 438, 450, 503, 588
BspANI GGCC 3 cut(s) 125, 312, 461
BspLI GGNNCC 5 cut(s) 289, 386, 387, 448, 536
BspT107I GGYRCC 2 cut(s) 287, 446
BsrFI RCCGGY 3 cut(s) 308, 416, 461
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 1 cut(s) 372
BssAI RCCGGY 3 cut(s) 308, 416, 461
BssECI CCNNGG 5 cut(s) 120, 229, 334, 391, 456
BssNI GRCGYC 2 cut(s) 288, 447
BssT1I CCWWGG 3 cut(s) 120, 229, 391
Bst4CI ACNGT 4 cut(s) 131, 319, 331, 602
BstACI GRCGYC 2 cut(s) 288, 447
BstAUI TGTACA 1 cut(s) 477
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 418, 556
BstDSI CCRYGG 2 cut(s) 120, 456
BstF5I GGATG 5 cut(s) 116, 399, 480, 501, 619
BstH2I RGCGCY 2 cut(s) 291, 450
BstHHI GCGC 2 cut(s) 290, 449
BstMAI GTCTC 4 cut(s) 9, 169, 286, 373
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 4 cut(s) 122, 444, 458, 626
BstSCI CCNGG 3 cut(s) 505, 516, 622
BstSLI GKGCMC 1 cut(s) 241
BstSNI TACGTA 1 cut(s) 221
BstV1I GCAGC 4 cut(s) 169, 172, 464, 629
BsuRI GGCC 3 cut(s) 125, 312, 461
BtgI CCRYGG 2 cut(s) 120, 456
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 5 cut(s) 116, 399, 480, 501, 619
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 2 cut(s) 418, 556
CfoI GCGC 2 cut(s) 290, 449
Cfr10I RCCGGY 3 cut(s) 308, 416, 461
Cfr13I GGNCC 2 cut(s) 385, 514
CpoI CGGWCCG 1 cut(s) 514
Csp6I GTAC 2 cut(s) 478, 484
CspI CGGWCCG 1 cut(s) 514
CviAII CATG 3 cut(s) 9, 121, 433
CviQI GTAC 2 cut(s) 478, 484
DinI GGCGCC 2 cut(s) 289, 448
EaeI YGGCCR 2 cut(s) 123, 459
EciI GGCGGA 1 cut(s) 603
Ecl136II GAGCTC 1 cut(s) 170
Eco105I TACGTA 1 cut(s) 221
Eco130I CCWWGG 3 cut(s) 120, 229, 391
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 385, 514
Eco53kI GAGCTC 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 385
EcoT14I CCWWGG 3 cut(s) 120, 229, 391
EcoT38I GRGCYC 1 cut(s) 172
EgeI GGCGCC 2 cut(s) 289, 448
EheI GGCGCC 2 cut(s) 289, 448
ErhI CCWWGG 3 cut(s) 120, 229, 391
Esp3I CGTCTC 2 cut(s) 286, 373
FaeI CATG 3 cut(s) 12, 124, 436
FaiI YATR 8 cut(s) 10, 122, 189, 380, 382, 434, 573, 585
FaqI GGGAC 3 cut(s) 18, 360, 371
FatI CATG 3 cut(s) 8, 120, 432
FauI CCCGC 3 cut(s) 68, 431, 510
FauNDI CATATG 1 cut(s) 380
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 5 cut(s) 158, 161, 450, 453, 618
FokI GGATG 5 cut(s) 103, 386, 487, 508, 626
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 5 cut(s) 158, 161, 450, 453, 618
FspBI CTAG 1 cut(s) 576
GlaI GCGC 2 cut(s) 289, 448
GluI GCNGC 5 cut(s) 158, 161, 450, 453, 618
GsaI CCCAGC 3 cut(s) 146, 157, 256
GsuI CTGGAG 1 cut(s) 355
HaeII RGCGCY 2 cut(s) 291, 450
HaeIII GGCC 3 cut(s) 125, 312, 461
HapII CCGG 8 cut(s) 285, 309, 417, 462, 507, 517, 538, 624
HhaI GCGC 2 cut(s) 290, 449
Hin1I GRCGYC 2 cut(s) 288, 447
Hin1II CATG 3 cut(s) 12, 124, 436
Hin6I GCGC 2 cut(s) 288, 447
HinP1I GCGC 2 cut(s) 288, 447
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HpaII CCGG 8 cut(s) 285, 309, 417, 462, 507, 517, 538, 624
HphI GGTGA 6 cut(s) 125, 262, 298, 307, 313, 343
Hpy166II GTNNAC 3 cut(s) 224, 239, 523
Hpy188I TCNGA 3 cut(s) 174, 338, 514
Hpy8I GTNNAC 3 cut(s) 224, 239, 523
Hpy99I CGWCG 1 cut(s) 263
HpyCH4III ACNGT 4 cut(s) 131, 319, 331, 602
HpyCH4IV ACGT 2 cut(s) 220, 561
HpyCH4V TGCA 3 cut(s) 239, 499, 617
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 444, 458, 626
HpySE526I ACGT 2 cut(s) 220, 561
Hsp92I GRCGYC 2 cut(s) 288, 447
Hsp92II CATG 3 cut(s) 12, 124, 436
HspAI GCGC 2 cut(s) 288, 447
KasI GGCGCC 2 cut(s) 287, 446
KflI GGGWCCC 1 cut(s) 385
KroI GCCGGC 1 cut(s) 416
KroNI GCCGGC 1 cut(s) 418
LmnI GCTCC 3 cut(s) 175, 534, 625
Lsp1109I GCAGC 4 cut(s) 169, 172, 464, 629
LweI GCATC 4 cut(s) 125, 405, 486, 604
MaeI CTAG 1 cut(s) 576
MaeII ACGT 2 cut(s) 220, 561
MaeIII GTNAC 2 cut(s) 131, 319
MboII GAAGA 3 cut(s) 11, 340, 415
MhlI GDGCHC 2 cut(s) 172, 241
Mly113I GGCGCC 2 cut(s) 288, 447
MroNI GCCGGC 1 cut(s) 416
MseI TTAA 2 cut(s) 51, 631
MspI CCGG 8 cut(s) 285, 309, 417, 462, 507, 517, 538, 624
MspR9I CCNGG 3 cut(s) 507, 518, 624
MwoI GCNNNNNNNGC 4 cut(s) 122, 444, 458, 626
NaeI GCCGGC 1 cut(s) 418
NarI GGCGCC 2 cut(s) 288, 447
NciI CCSGG 3 cut(s) 507, 518, 624
NcoI CCATGG 1 cut(s) 120
NdeI CATATG 1 cut(s) 380
NgoMIV GCCGGC 1 cut(s) 416
NlaIII CATG 3 cut(s) 12, 124, 436
NlaIV GGNNCC 5 cut(s) 289, 386, 387, 448, 536
NmuCI GTSAC 2 cut(s) 131, 319
PdiI GCCGGC 1 cut(s) 418
PflFI GACNNNGTC 1 cut(s) 518
PkrI GCNGC 5 cut(s) 159, 162, 451, 454, 619
PluTI GGCGCC 2 cut(s) 291, 450
Ppu21I YACGTR 1 cut(s) 221
PpuMI RGGWCCY 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 385
PspFI CCCAGC 3 cut(s) 142, 153, 252
PspN4I GGNNCC 5 cut(s) 289, 386, 387, 448, 536
PspPI GGNCC 2 cut(s) 385, 514
PspPPI RGGWCCY 1 cut(s) 385
PsyI GACNNNGTC 1 cut(s) 518
RsaI GTAC 2 cut(s) 479, 485
RsaNI GTAC 2 cut(s) 478, 484
Rsr2I CGGWCCG 1 cut(s) 514
RsrII CGGWCCG 1 cut(s) 514
SacI GAGCTC 1 cut(s) 172
SalI GTCGAC 1 cut(s) 521
SaqAI TTAA 2 cut(s) 51, 631
SatI GCNGC 5 cut(s) 158, 161, 450, 453, 618
Sau96I GGNCC 2 cut(s) 385, 514
ScrFI CCNGG 3 cut(s) 507, 518, 624
SduI GDGCHC 2 cut(s) 172, 241
SfaNI GCATC 4 cut(s) 125, 405, 486, 604
SfoI GGCGCC 2 cut(s) 289, 448
SinI GGWCC 2 cut(s) 385, 514
SnaBI TACGTA 1 cut(s) 221
SsiI CCGC 6 cut(s) 61, 324, 438, 450, 503, 588
SspDI GGCGCC 2 cut(s) 287, 446
SspMI CTAG 1 cut(s) 576
SstI GAGCTC 1 cut(s) 172
StyD4I CCNGG 3 cut(s) 505, 516, 622
StyI CCWWGG 3 cut(s) 120, 229, 391
TaaI ACNGT 4 cut(s) 131, 319, 331, 602
TaiI ACGT 2 cut(s) 223, 564
TaqI TCGA 1 cut(s) 522
TatI WGTACW 1 cut(s) 477
TauI GCSGC 1 cut(s) 452
Tru1I TTAA 2 cut(s) 51, 631
Tru9I TTAA 2 cut(s) 51, 631
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 2 cut(s) 131, 319
TseI GCWGC 4 cut(s) 157, 160, 452, 617
Tsp45I GTSAC 2 cut(s) 131, 319
TspRI CASTG 1 cut(s) 418
Tth111I GACNNNGTC 1 cut(s) 518
VneI GTGCAC 1 cut(s) 237
VpaK11BI GGWCC 2 cut(s) 385, 514
XmiI GTMKAC 1 cut(s) 522
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.