Rroxscaffold_3G00269590

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015955
Physical Location & Seq
Reverse (-)
62444622 .. 62445182
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269590.1

Sequence Viewer

Length: 561 bp
ATGACACTCTCTCTCTCCGTCCCCCGCTCTCTCCAACTCATCTCCTCCATGGCGGACCGTCACCAGCAACCCCACCAGGCCCAGAACCAGAACCACCACCAGCACCGATTGTCAGCCCAAACCAGACCCTCCCACACCTCGTTCCTAAGTAAACTCCAAGGCCACGTCCCAAATTCCACTCAACTCATCGGACTACTCACCCTCCTCGTCTCCGGCGGTATTCTCCTACTCCTGACAGGAATCACAATCACCGTTACGGTTCTGGGACTCATCTTCTTCACTCCAATCCTCATAGTTTCCAGCCCGATATGGGTCCCACTTGGGACGGTTCTGTTCCTGACCGCGGCCGGCTTCGTGTCCATGTGCGGGTTTGGGGCCGCAGTCGTGGGCGGGTTGTCGTGGATGTACAGGTACTTCAAGGGGATGCACCCGCCCGGTTCGGACCGGGTTGATTATGCTCGGAGCAGGATTTACGACACGGCTAGCCACGTCAAGGACTATGCTAAGGAGTACGGTGGGTATTTGCATAGTAAGGTCAAGGATGCAGCTCCGGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

186

Amino Acids

20.22

Weight (kDa)

9.81

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 60 - 172 2.1e-45 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 27
AccII CGCG 1 cut(s) 344
AciI CCGC 9 cut(s) 25, 53, 216, 342, 344, 366, 378, 390, 431
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 3 cut(s) 407, 413, 512
AfiI CCNNNNNNNGG 4 cut(s) 310, 343, 366, 493
AgsI TTSAA 1 cut(s) 418
AjiI CACGTC 2 cut(s) 166, 490
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 2 cut(s) 548, 557
AluI AGCT 2 cut(s) 548, 557
Alw26I GTCTC 1 cut(s) 214
AoxI GGCC 4 cut(s) 78, 160, 345, 375
ApeKI GCWGC 1 cut(s) 545
ApoI RAATTY 1 cut(s) 172
AspS9I GGNCC 5 cut(s) 55, 79, 313, 375, 442
AsuC2I CCSGG 3 cut(s) 435, 446, 552
AsuHPI GGTGA 3 cut(s) 53, 190, 241
AsuNHI GCTAGC 1 cut(s) 482
AvaII GGWCC 3 cut(s) 55, 313, 442
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BbvI GCAGC 1 cut(s) 557
BceAI ACGGC 1 cut(s) 495
BciT130I CCWGG 1 cut(s) 77
BcnI CCSGG 3 cut(s) 435, 446, 552
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 483
BisI GCNGC 3 cut(s) 345, 378, 546
BlsI GCNGC 3 cut(s) 346, 379, 547
Bme1390I CCNGG 4 cut(s) 77, 435, 446, 552
Bme18I GGWCC 3 cut(s) 55, 313, 442
BmgBI CACGTC 2 cut(s) 166, 490
BmgT120I GGNCC 5 cut(s) 55, 79, 313, 375, 442
BmiI GGNNCC 3 cut(s) 314, 315, 376
BmrFI CCNGG 4 cut(s) 77, 435, 446, 552
BmsI GCATC 2 cut(s) 414, 532
BmtI GCTAGC 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 504
BpuMI CCSGG 3 cut(s) 435, 446, 552
BsaJI CCNNGG 3 cut(s) 48, 157, 342
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 4 cut(s) 310, 343, 366, 493
Bse118I RCCGGY 1 cut(s) 347
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 3 cut(s) 48, 157, 342
BseGI GGATG 3 cut(s) 408, 429, 547
BseLI CCNNNNNNNGG 4 cut(s) 310, 343, 366, 493
BseRI GAGGAG 2 cut(s) 34, 194
BseX3I CGGCCG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 4 cut(s) 80, 162, 347, 377
BsiEI CGRYCG 1 cut(s) 348
BsiSI CCGG 5 cut(s) 213, 348, 435, 445, 551
BslFI GGGAC 5 cut(s) 5, 152, 279, 299, 337
BslI CCNNNNNNNGG 4 cut(s) 310, 343, 366, 493
BsmAI GTCTC 1 cut(s) 214
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 5 cut(s) 5, 152, 279, 299, 337
BsnI GGCC 4 cut(s) 80, 162, 347, 377
Bsp1407I TGTACA 1 cut(s) 405
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 9 cut(s) 25, 53, 216, 342, 344, 366, 378, 390, 431
BspANI GGCC 4 cut(s) 80, 162, 347, 377
BspFNI CGCG 1 cut(s) 344
BspLI GGNNCC 3 cut(s) 314, 315, 376
BspOI GCTAGC 1 cut(s) 486
BsrBI CCGCTC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 347
BsrGI TGTACA 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 48, 157, 342
BssT1I CCWWGG 2 cut(s) 48, 157
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 5 cut(s) 59, 253, 259, 328, 515
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 349, 484
BstDEI CTNAG 3 cut(s) 146, 504, 558
BstDSI CCRYGG 2 cut(s) 48, 342
BstF5I GGATG 3 cut(s) 408, 429, 547
BstFNI CGCG 1 cut(s) 344
BstMAI GTCTC 1 cut(s) 214
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 4 cut(s) 75, 433, 444, 550
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 557
BstZI CGGCCG 1 cut(s) 345
BsuRI GGCC 4 cut(s) 80, 162, 347, 377
BtgI CCRYGG 2 cut(s) 48, 342
BtrI CACGTC 2 cut(s) 166, 490
BtsCI GGATG 3 cut(s) 408, 429, 547
Cac8I GCNNGC 2 cut(s) 349, 484
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 5 cut(s) 55, 79, 313, 375, 442
Cfr42I CCGCGG 1 cut(s) 345
CpoI CGGWCCG 2 cut(s) 55, 442
Csp6I GTAC 3 cut(s) 406, 412, 511
CspI CGGWCCG 2 cut(s) 55, 442
CviAII CATG 2 cut(s) 49, 361
CviQI GTAC 3 cut(s) 406, 412, 511
DdeI CTNAG 3 cut(s) 146, 504, 558
EaeI YGGCCR 1 cut(s) 345
EagI CGGCCG 1 cut(s) 345
EciI GGCGGA 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 345
Eco130I CCWWGG 2 cut(s) 48, 157
Eco47I GGWCC 3 cut(s) 55, 313, 442
Eco52I CGGCCG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 2 cut(s) 48, 157
ErhI CCWWGG 2 cut(s) 48, 157
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 2 cut(s) 52, 364
FaiI YATR 7 cut(s) 50, 293, 310, 362, 456, 501, 528
FaqI GGGAC 5 cut(s) 5, 152, 279, 299, 337
FatI CATG 2 cut(s) 48, 360
FauI CCCGC 4 cut(s) 32, 359, 383, 438
Fnu4HI GCNGC 3 cut(s) 345, 378, 546
FokI GGATG 3 cut(s) 415, 436, 554
Fsp4HI GCNGC 3 cut(s) 345, 378, 546
FspBI CTAG 1 cut(s) 483
GluI GCNGC 3 cut(s) 345, 378, 546
HaeIII GGCC 4 cut(s) 80, 162, 347, 377
HapII CCGG 5 cut(s) 213, 348, 435, 445, 551
Hin1II CATG 2 cut(s) 52, 364
HinfI GANTC 2 cut(s) 240, 267
HpaII CCGG 5 cut(s) 213, 348, 435, 445, 551
HphI GGTGA 3 cut(s) 53, 190, 241
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 3 cut(s) 191, 442, 462
Hpy188III TCNNGA 2 cut(s) 232, 337
Hpy8I GTNNAC 1 cut(s) 152
HpyCH4III ACNGT 5 cut(s) 59, 253, 259, 328, 515
HpyCH4IV ACGT 2 cut(s) 165, 489
HpyCH4V TGCA 3 cut(s) 427, 526, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 3 cut(s) 146, 504, 558
HpySE526I ACGT 2 cut(s) 165, 489
Hsp92II CATG 2 cut(s) 52, 364
KflI GGGWCCC 1 cut(s) 313
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
KspI CCGCGG 1 cut(s) 345
LmnI GCTCC 3 cut(s) 462, 553, 554
Lsp1109I GCAGC 1 cut(s) 557
LweI GCATC 2 cut(s) 414, 532
MaeI CTAG 1 cut(s) 483
MaeII ACGT 2 cut(s) 165, 489
MaeIII GTNAC 2 cut(s) 59, 253
MbiI CCGCTC 1 cut(s) 27
MboII GAAGA 2 cut(s) 265, 268
MluCI AATT 1 cut(s) 172
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 6 cut(s) 55, 139, 148, 212, 215, 299
MroNI GCCGGC 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 5 cut(s) 213, 348, 435, 445, 551
MspR9I CCNGG 4 cut(s) 77, 435, 446, 552
MvaI CCWGG 1 cut(s) 77
MvnI CGCG 1 cut(s) 344
MwoI GCNNNNNNNGC 1 cut(s) 554
NaeI GCCGGC 1 cut(s) 349
NciI CCSGG 3 cut(s) 435, 446, 552
NcoI CCATGG 1 cut(s) 48
NgoMIV GCCGGC 1 cut(s) 347
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 2 cut(s) 52, 364
NlaIV GGNNCC 3 cut(s) 314, 315, 376
NmuCI GTSAC 1 cut(s) 59
PdiI GCCGGC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 240
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 3 cut(s) 346, 379, 547
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 3 cut(s) 314, 315, 376
PspPI GGNCC 5 cut(s) 55, 79, 313, 375, 442
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 3 cut(s) 407, 413, 512
RsaNI GTAC 3 cut(s) 406, 412, 511
Rsr2I CGGWCCG 2 cut(s) 55, 442
RsrII CGGWCCG 2 cut(s) 55, 442
SacII CCGCGG 1 cut(s) 345
SatI GCNGC 3 cut(s) 345, 378, 546
Sau96I GGNCC 5 cut(s) 55, 79, 313, 375, 442
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 4 cut(s) 77, 435, 446, 552
SetI ASST 7 cut(s) 140, 168, 413, 492, 537, 550, 559
SfaNI GCATC 2 cut(s) 414, 532
Sfr303I CCGCGG 1 cut(s) 345
SgrBI CCGCGG 1 cut(s) 345
SinI GGWCC 3 cut(s) 55, 313, 442
Sse9I AATT 1 cut(s) 172
SsiI CCGC 9 cut(s) 25, 53, 216, 342, 344, 366, 378, 390, 431
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 4 cut(s) 75, 433, 444, 550
StyI CCWWGG 2 cut(s) 48, 157
TaaI ACNGT 5 cut(s) 59, 253, 259, 328, 515
TaiI ACGT 2 cut(s) 168, 492
TasI AATT 1 cut(s) 172
TatI WGTACW 1 cut(s) 405
TauI GCSGC 2 cut(s) 347, 380
TfiI GAWTC 1 cut(s) 240
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 7
VpaK11BI GGWCC 3 cut(s) 55, 313, 442
XapI RAATTY 1 cut(s) 172
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.