Rh7DG067500

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015955
Physical Location & Seq
Forward (+)
5157725 .. 5158231
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG067500.1

Sequence Viewer

Length: 507 bp
ATGGCGGACCGTCACCAGCAACCCCACCAGGCCCAGAACCACCAGCAACACCGATTATCAGCCCAAACCAGACCCTCCCACACCTCGTTCCTAAGTAAACTCCAAGGCCACGTCCCAAATTCCACTCAACTCATCGGACTACTCACCCTCCTCGTCTCCGGCGGTATTCTCCTACTCCTGACAGGAATCACGATCACCGTTACGGTTCTGGGACTCATCTTCTTCACTCCAATCCTCATAGTTTCCAGCCCGATATGGGTCCCACTCGGGACGGTGCTGTTCCTGACCGCGGCCGGGTTCGTGTCCATGTGCGGGTTCGGGGCCGCCGTCGTGGGCGGGTTGTCGTGGATGTACAGGTACTTCAAGGGGATGCACCCGCCCGGTTCGGACCGGGTTGATTATGCTCGGAGCAGGATTTACGACACGGCTAGCCACGTCAAGGACTATGCTAAAGAGTACGGTGGGTATTTGCATGGTAAGGTCAAGGATGCAGCTCCGGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

168

Amino Acids

18.23

Weight (kDa)

9.67

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 42 - 154 1.6e-45 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 290
AciI CCGC 8 cut(s) 5, 162, 288, 290, 312, 324, 336, 377
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 3 cut(s) 353, 359, 458
AfiI CCNNNNNNNGG 5 cut(s) 256, 289, 294, 312, 439
AgsI TTSAA 1 cut(s) 364
AjiI CACGTC 2 cut(s) 112, 436
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 494, 503
AluI AGCT 2 cut(s) 494, 503
Alw26I GTCTC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 4 cut(s) 30, 106, 291, 321
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 1 cut(s) 118
AspS9I GGNCC 5 cut(s) 7, 31, 259, 321, 388
AsuC2I CCSGG 4 cut(s) 295, 381, 392, 498
AsuHPI GGTGA 3 cut(s) 5, 136, 187
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 3 cut(s) 7, 259, 388
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BbvI GCAGC 1 cut(s) 503
BceAI ACGGC 2 cut(s) 311, 441
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 4 cut(s) 295, 381, 392, 498
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 429
BisI GCNGC 3 cut(s) 291, 324, 492
BlsI GCNGC 3 cut(s) 292, 325, 493
Bme1390I CCNGG 5 cut(s) 29, 295, 381, 392, 498
Bme18I GGWCC 3 cut(s) 7, 259, 388
BmeT110I CYCGRG 1 cut(s) 266
BmgBI CACGTC 2 cut(s) 112, 436
BmgT120I GGNCC 5 cut(s) 7, 31, 259, 321, 388
BmiI GGNNCC 3 cut(s) 260, 261, 322
BmrFI CCNGG 5 cut(s) 29, 295, 381, 392, 498
BmsI GCATC 2 cut(s) 360, 478
BmtI GCTAGC 1 cut(s) 432
BpuMI CCSGG 4 cut(s) 295, 381, 392, 498
BsaJI CCNNGG 2 cut(s) 103, 288
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 5 cut(s) 256, 289, 294, 312, 439
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 103, 288
BseGI GGATG 3 cut(s) 354, 375, 493
BseLI CCNNNNNNNGG 5 cut(s) 256, 289, 294, 312, 439
BseRI GAGGAG 1 cut(s) 140
BseX3I CGGCCG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 503
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 4 cut(s) 32, 108, 293, 323
BsiEI CGRYCG 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 5 cut(s) 159, 294, 381, 391, 497
BslFI GGGAC 4 cut(s) 98, 225, 245, 283
BslI CCNNNNNNNGG 5 cut(s) 256, 289, 294, 312, 439
BsmAI GTCTC 1 cut(s) 160
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 4 cut(s) 98, 225, 245, 283
BsnI GGCC 4 cut(s) 32, 108, 293, 323
BsoBI CYCGRG 1 cut(s) 266
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 8 cut(s) 5, 162, 288, 290, 312, 324, 336, 377
BspANI GGCC 4 cut(s) 32, 108, 293, 323
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 3 cut(s) 260, 261, 322
BspOI GCTAGC 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 351
BssECI CCNNGG 2 cut(s) 103, 288
BssMI GATC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 5 cut(s) 11, 199, 205, 274, 461
BstAUI TGTACA 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 2 cut(s) 92, 504
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 3 cut(s) 354, 375, 493
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 1 cut(s) 192
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 5 cut(s) 27, 293, 379, 390, 496
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 503
BstZI CGGCCG 1 cut(s) 291
BsuRI GGCC 4 cut(s) 32, 108, 293, 323
BtgI CCRYGG 1 cut(s) 288
BtrI CACGTC 2 cut(s) 112, 436
BtsCI GGATG 3 cut(s) 354, 375, 493
Cac8I GCNNGC 1 cut(s) 430
Cfr13I GGNCC 5 cut(s) 7, 31, 259, 321, 388
Cfr42I CCGCGG 1 cut(s) 291
CpoI CGGWCCG 2 cut(s) 7, 388
Csp6I GTAC 3 cut(s) 352, 358, 457
CspI CGGWCCG 2 cut(s) 7, 388
CviAII CATG 2 cut(s) 307, 473
CviQI GTAC 3 cut(s) 352, 358, 457
DdeI CTNAG 2 cut(s) 92, 504
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 291
EagI CGGCCG 1 cut(s) 291
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 103
Eco47I GGWCC 3 cut(s) 7, 259, 388
Eco52I CGGCCG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 2 cut(s) 310, 476
FaiI YATR 6 cut(s) 239, 256, 308, 402, 447, 474
FaqI GGGAC 4 cut(s) 98, 225, 245, 283
FatI CATG 2 cut(s) 306, 472
FauI CCCGC 3 cut(s) 305, 329, 384
Fnu4HI GCNGC 3 cut(s) 291, 324, 492
FokI GGATG 3 cut(s) 361, 382, 500
Fsp4HI GCNGC 3 cut(s) 291, 324, 492
FspBI CTAG 1 cut(s) 429
GluI GCNGC 3 cut(s) 291, 324, 492
HaeIII GGCC 4 cut(s) 32, 108, 293, 323
HapII CCGG 5 cut(s) 159, 294, 381, 391, 497
Hin1II CATG 2 cut(s) 310, 476
HinfI GANTC 2 cut(s) 186, 213
HpaII CCGG 5 cut(s) 159, 294, 381, 391, 497
HphI GGTGA 3 cut(s) 5, 136, 187
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 3 cut(s) 137, 388, 408
Hpy188III TCNNGA 4 cut(s) 178, 190, 268, 283
Hpy8I GTNNAC 1 cut(s) 98
Hpy99I CGWCG 1 cut(s) 332
HpyCH4III ACNGT 5 cut(s) 11, 199, 205, 274, 461
HpyCH4IV ACGT 2 cut(s) 111, 435
HpyCH4V TGCA 3 cut(s) 373, 472, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 2 cut(s) 92, 504
HpySE526I ACGT 2 cut(s) 111, 435
Hsp92II CATG 2 cut(s) 310, 476
KflI GGGWCCC 1 cut(s) 259
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 3 cut(s) 408, 499, 500
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 2 cut(s) 360, 478
MaeI CTAG 1 cut(s) 429
MaeII ACGT 2 cut(s) 111, 435
MaeIII GTNAC 2 cut(s) 11, 199
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 211, 214
MluCI AATT 1 cut(s) 118
MlyI GAGTC 1 cut(s) 207
MnlI CCTC 5 cut(s) 85, 94, 158, 161, 245
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 5 cut(s) 159, 294, 381, 391, 497
MspR9I CCNGG 5 cut(s) 29, 295, 381, 392, 498
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 500
NciI CCSGG 4 cut(s) 295, 381, 392, 498
NdeII GATC 1 cut(s) 192
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 2 cut(s) 310, 476
NlaIV GGNNCC 3 cut(s) 260, 261, 322
NmuCI GTSAC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PfeI GAWTC 1 cut(s) 186
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 3 cut(s) 292, 325, 493
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 260, 261, 322
PspPI GGNCC 5 cut(s) 7, 31, 259, 321, 388
PspPPI RGGWCCY 1 cut(s) 259
RsaI GTAC 3 cut(s) 353, 359, 458
RsaNI GTAC 3 cut(s) 352, 358, 457
Rsr2I CGGWCCG 2 cut(s) 7, 388
RsrII CGGWCCG 2 cut(s) 7, 388
SacII CCGCGG 1 cut(s) 291
SatI GCNGC 3 cut(s) 291, 324, 492
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 5 cut(s) 7, 31, 259, 321, 388
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 5 cut(s) 29, 295, 381, 392, 498
SetI ASST 7 cut(s) 86, 114, 359, 438, 483, 496, 505
SfaNI GCATC 2 cut(s) 360, 478
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SinI GGWCC 3 cut(s) 7, 259, 388
Sse9I AATT 1 cut(s) 118
SsiI CCGC 8 cut(s) 5, 162, 288, 290, 312, 324, 336, 377
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 5 cut(s) 27, 293, 379, 390, 496
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 5 cut(s) 11, 199, 205, 274, 461
TaiI ACGT 2 cut(s) 114, 438
TasI AATT 1 cut(s) 118
TatI WGTACW 1 cut(s) 351
TauI GCSGC 2 cut(s) 293, 326
TfiI GAWTC 1 cut(s) 186
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 11
VpaK11BI GGWCC 3 cut(s) 7, 259, 388
XapI RAATTY 1 cut(s) 118
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.