Rh7BG067500

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015955
Physical Location & Seq
Forward (+)
4458057 .. 4458560
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG067500.1

Sequence Viewer

Length: 504 bp
ATGGCGGACCGTCACCAGCAACCCCACCTGGCCCAGAACCAGAACCACCGATTATCAGCCCAAACCAGACCCTCCCACACCTCGTTCCTAAGTAAACTCCAAGGCCACGTCCCAAATTCCACTCAACTCATCGGACTACTCACCCTCCTCGTCTCCGGCGGTATTCTCCTACTCCTGACAGGAATCACAATCACCGTTACGGTTCTGGGACTCATCTTCTTCACTCCAATCCTCATAGTTTCCAGCCCGATATGGGTCCCACTCGGGACGGTGCTGTTCCTGACCGCGGCCGGGTTCGTGTCCATGTGCGGGTTCGGGGCCGCCGTCGTGGGCGGGTTGTCTTGGATGTACAGGTACTTCAAGGGGATGCACCCGCCCGGTTCGGACCGGGTTGACTATGCTCGGAGCAGGATTTACGACACGGCTAGCCACGTCAAGGACTATGCTAAAGAGTACGGTGGGTATTTGCAAAGTAAGGTCAAGGATGCAGCTCCGGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

167

Amino Acids

18.08

Weight (kDa)

9.67

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 41 - 153 1.5e-45 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 287
AciI CCGC 8 cut(s) 5, 159, 285, 287, 309, 321, 333, 374
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 3 cut(s) 350, 356, 455
AfiI CCNNNNNNNGG 5 cut(s) 253, 286, 291, 309, 436
AgsI TTSAA 1 cut(s) 361
AjiI CACGTC 2 cut(s) 109, 433
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 491, 500
AluI AGCT 2 cut(s) 491, 500
Alw26I GTCTC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 4 cut(s) 30, 103, 288, 318
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 115
AspS9I GGNCC 5 cut(s) 7, 31, 256, 318, 385
AsuC2I CCSGG 4 cut(s) 292, 378, 389, 495
AsuHPI GGTGA 3 cut(s) 5, 133, 184
AsuNHI GCTAGC 1 cut(s) 425
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 3 cut(s) 7, 256, 385
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BbvI GCAGC 1 cut(s) 500
BceAI ACGGC 2 cut(s) 308, 438
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 4 cut(s) 292, 378, 389, 495
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 426
BisI GCNGC 3 cut(s) 288, 321, 489
BlsI GCNGC 3 cut(s) 289, 322, 490
Bme1390I CCNGG 5 cut(s) 29, 292, 378, 389, 495
Bme18I GGWCC 3 cut(s) 7, 256, 385
BmeT110I CYCGRG 1 cut(s) 263
BmgBI CACGTC 2 cut(s) 109, 433
BmgT120I GGNCC 5 cut(s) 7, 31, 256, 318, 385
BmiI GGNNCC 3 cut(s) 257, 258, 319
BmrFI CCNGG 5 cut(s) 29, 292, 378, 389, 495
BmsI GCATC 2 cut(s) 357, 475
BmtI GCTAGC 1 cut(s) 429
BpuMI CCSGG 4 cut(s) 292, 378, 389, 495
BsaJI CCNNGG 2 cut(s) 100, 285
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 5 cut(s) 253, 286, 291, 309, 436
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 100, 285
BseGI GGATG 3 cut(s) 351, 372, 490
BseLI CCNNNNNNNGG 5 cut(s) 253, 286, 291, 309, 436
BseRI GAGGAG 1 cut(s) 137
BseX3I CGGCCG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 500
Bsh1236I CGCG 1 cut(s) 287
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 4 cut(s) 32, 105, 290, 320
BsiEI CGRYCG 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 5 cut(s) 156, 291, 378, 388, 494
BslFI GGGAC 4 cut(s) 95, 222, 242, 280
BslI CCNNNNNNNGG 5 cut(s) 253, 286, 291, 309, 436
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 4 cut(s) 95, 222, 242, 280
BsnI GGCC 4 cut(s) 32, 105, 290, 320
BsoBI CYCGRG 1 cut(s) 263
Bsp1407I TGTACA 1 cut(s) 348
BspACI CCGC 8 cut(s) 5, 159, 285, 287, 309, 321, 333, 374
BspANI GGCC 4 cut(s) 32, 105, 290, 320
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 3 cut(s) 257, 258, 319
BspOI GCTAGC 1 cut(s) 429
BsrGI TGTACA 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 100, 285
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 5 cut(s) 11, 196, 202, 271, 458
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 89, 501
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 3 cut(s) 351, 372, 490
BstFNI CGCG 1 cut(s) 287
BstMAI GTCTC 1 cut(s) 157
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 5 cut(s) 27, 290, 376, 387, 493
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 500
BstZI CGGCCG 1 cut(s) 288
BsuRI GGCC 4 cut(s) 32, 105, 290, 320
BtgI CCRYGG 1 cut(s) 285
BtrI CACGTC 2 cut(s) 109, 433
BtsCI GGATG 3 cut(s) 351, 372, 490
Cac8I GCNNGC 1 cut(s) 427
Cfr13I GGNCC 5 cut(s) 7, 31, 256, 318, 385
Cfr42I CCGCGG 1 cut(s) 288
CpoI CGGWCCG 2 cut(s) 7, 385
Csp6I GTAC 3 cut(s) 349, 355, 454
CspI CGGWCCG 2 cut(s) 7, 385
CviAII CATG 1 cut(s) 304
CviQI GTAC 3 cut(s) 349, 355, 454
DdeI CTNAG 2 cut(s) 89, 501
EaeI YGGCCR 1 cut(s) 288
EagI CGGCCG 1 cut(s) 288
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 100
Eco47I GGWCC 3 cut(s) 7, 256, 385
Eco52I CGGCCG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 1 cut(s) 307
FaiI YATR 5 cut(s) 236, 253, 305, 399, 444
FaqI GGGAC 4 cut(s) 95, 222, 242, 280
FatI CATG 1 cut(s) 303
FauI CCCGC 3 cut(s) 302, 326, 381
Fnu4HI GCNGC 3 cut(s) 288, 321, 489
FokI GGATG 3 cut(s) 358, 379, 497
Fsp4HI GCNGC 3 cut(s) 288, 321, 489
FspBI CTAG 1 cut(s) 426
GluI GCNGC 3 cut(s) 288, 321, 489
HaeIII GGCC 4 cut(s) 32, 105, 290, 320
HapII CCGG 5 cut(s) 156, 291, 378, 388, 494
Hin1II CATG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 2 cut(s) 183, 210
HpaII CCGG 5 cut(s) 156, 291, 378, 388, 494
HphI GGTGA 3 cut(s) 5, 133, 184
Hpy166II GTNNAC 2 cut(s) 95, 394
Hpy188I TCNGA 3 cut(s) 134, 385, 405
Hpy188III TCNNGA 3 cut(s) 175, 265, 280
Hpy8I GTNNAC 2 cut(s) 95, 394
Hpy99I CGWCG 1 cut(s) 329
HpyCH4III ACNGT 5 cut(s) 11, 196, 202, 271, 458
HpyCH4IV ACGT 2 cut(s) 108, 432
HpyCH4V TGCA 3 cut(s) 370, 469, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 2 cut(s) 89, 501
HpySE526I ACGT 2 cut(s) 108, 432
Hsp92II CATG 1 cut(s) 307
KflI GGGWCCC 1 cut(s) 256
KspI CCGCGG 1 cut(s) 288
LmnI GCTCC 3 cut(s) 405, 496, 497
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 2 cut(s) 357, 475
MaeI CTAG 1 cut(s) 426
MaeII ACGT 2 cut(s) 108, 432
MaeIII GTNAC 2 cut(s) 11, 196
MboII GAAGA 2 cut(s) 208, 211
MluCI AATT 1 cut(s) 115
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 5 cut(s) 82, 91, 155, 158, 242
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 5 cut(s) 156, 291, 378, 388, 494
MspR9I CCNGG 5 cut(s) 29, 292, 378, 389, 495
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 497
NciI CCSGG 4 cut(s) 292, 378, 389, 495
NheI GCTAGC 1 cut(s) 425
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 3 cut(s) 257, 258, 319
NmuCI GTSAC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 1 cut(s) 183
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 3 cut(s) 289, 322, 490
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 257, 258, 319
PspPI GGNCC 5 cut(s) 7, 31, 256, 318, 385
PspPPI RGGWCCY 1 cut(s) 256
RsaI GTAC 3 cut(s) 350, 356, 455
RsaNI GTAC 3 cut(s) 349, 355, 454
Rsr2I CGGWCCG 2 cut(s) 7, 385
RsrII CGGWCCG 2 cut(s) 7, 385
SacII CCGCGG 1 cut(s) 288
SatI GCNGC 3 cut(s) 288, 321, 489
Sau96I GGNCC 5 cut(s) 7, 31, 256, 318, 385
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 5 cut(s) 29, 292, 378, 389, 495
SetI ASST 8 cut(s) 30, 83, 111, 356, 435, 480, 493, 502
SfaNI GCATC 2 cut(s) 357, 475
Sfr303I CCGCGG 1 cut(s) 288
SgrBI CCGCGG 1 cut(s) 288
SinI GGWCC 3 cut(s) 7, 256, 385
Sse9I AATT 1 cut(s) 115
SsiI CCGC 8 cut(s) 5, 159, 285, 287, 309, 321, 333, 374
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 5 cut(s) 27, 290, 376, 387, 493
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 5 cut(s) 11, 196, 202, 271, 458
TaiI ACGT 2 cut(s) 111, 435
TasI AATT 1 cut(s) 115
TatI WGTACW 1 cut(s) 348
TauI GCSGC 2 cut(s) 290, 323
TfiI GAWTC 1 cut(s) 183
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 11
VpaK11BI GGWCC 3 cut(s) 7, 256, 385
XapI RAATTY 1 cut(s) 115
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.