AT3G18570

glycine-rich protein oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015955
Physical Location & Seq
Reverse (-)
6395790 .. 6396624
835 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18570.1

Sequence Viewer

Length: 501 bp
ATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTGGCCCAATTATGGTAGCACCGCCACCACCACCGTTAGCAACAGCCCCATCTCGTCGTTTTTCCATCAGCTCCGATCCCATTCACCAACATCCTCGCAGCTCTTTGGTTTCCTCGCTCTCTTTATCTCCACTGGCATCCTCCTCTTCCTCCTTGGTGTAAGCGTCACCGCTGCCGTGCTCGGCTTCATTGTCTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCCGTTTTTGTCGTCGTTGGCGGGTTCTTAACGGTCTCCGGATTTCTTGTCGGAACGGTGGCTTTAGTGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATTATGCACGTAGTAGGATCTATGACACGGCATCTCACGTCAAAGATTACGCTAGAGAATACGGTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

166

Amino Acids

18.13

Weight (kDa)

9.34

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 44 - 152 7.2e-37 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 305
AciI CCGC 7 cut(s) 5, 21, 57, 204, 288, 349, 485
AclWI GGATC 3 cut(s) 105, 385, 416
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 36, 47, 472
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 2 cut(s) 106, 136
AluI AGCT 2 cut(s) 106, 136
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 3 cut(s) 105, 385, 416
Ama87I CYCGRG 1 cut(s) 250
Aor13HI TCCGGA 1 cut(s) 305
AoxI GGCC 3 cut(s) 27, 38, 486
ApeKI GCWGC 2 cut(s) 133, 206
AspS9I GGNCC 3 cut(s) 28, 39, 487
AsuC2I CCSGG 2 cut(s) 359, 371
AsuHPI GGTGA 2 cut(s) 111, 193
AvaI CYCGRG 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 145, 193
BccI CCATC 3 cut(s) 92, 108, 382
BceAI ACGGC 2 cut(s) 194, 435
BciT130I CCWGG 1 cut(s) 492
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 2 cut(s) 359, 371
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 2 cut(s) 18, 444
BisI GCNGC 4 cut(s) 22, 134, 207, 486
BlsI GCNGC 4 cut(s) 23, 135, 208, 487
Bme1390I CCNGG 3 cut(s) 359, 371, 492
BmeT110I CYCGRG 1 cut(s) 250
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 3 cut(s) 28, 39, 487
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 3 cut(s) 359, 371, 492
BmsI GCATC 3 cut(s) 180, 431, 472
BpuMI CCSGG 2 cut(s) 359, 371
BsaAI YACGTR 1 cut(s) 401
BsaBI GATNNNNATC 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 4 cut(s) 187, 358, 466, 490
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 47, 472
Bse1I ACTGG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 245
BseAI TCCGGA 1 cut(s) 305
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 4 cut(s) 187, 358, 466, 490
BseGI GGATG 2 cut(s) 125, 171
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 3 cut(s) 36, 47, 472
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 145, 193
BshFI GGCC 3 cut(s) 29, 40, 488
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 3 cut(s) 306, 358, 371
BslI CCNNNNNNNGG 3 cut(s) 36, 47, 472
BsmAI GTCTC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 3 cut(s) 29, 40, 488
Bso31I GGTCTC 1 cut(s) 307
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 216
Bsp13I TCCGGA 1 cut(s) 305
Bsp143I GATC 4 cut(s) 110, 240, 377, 408
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 7 cut(s) 5, 21, 57, 204, 288, 349, 485
BspANI GGCC 3 cut(s) 29, 40, 488
BspEI TCCGGA 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 489
BspPI GGATC 3 cut(s) 105, 385, 416
BspTNI GGTCTC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 4 cut(s) 187, 358, 466, 490
BssMI GATC 4 cut(s) 110, 240, 377, 408
BssT1I CCWWGG 2 cut(s) 187, 466
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 4 cut(s) 70, 301, 325, 455
Bst6I CTCTTC 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 401
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 2 cut(s) 125, 171
BstKTI GATC 4 cut(s) 113, 243, 380, 411
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 4 cut(s) 110, 240, 377, 408
BstMWI GCNNNNNNNGC 2 cut(s) 482, 494
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 3 cut(s) 357, 369, 490
BstV1I GCAGC 2 cut(s) 145, 193
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 3 cut(s) 29, 40, 488
BtgI CCRYGG 1 cut(s) 466
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 2 cut(s) 125, 171
BtsIMutI CAGTG 1 cut(s) 165
Cfr13I GGNCC 3 cut(s) 28, 39, 487
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 346
CviAII CATG 1 cut(s) 467
CviJI RGCY 9 cut(s) 29, 40, 81, 106, 136, 219, 329, 476, 488
CviKI_1 RGCY 9 cut(s) 29, 40, 81, 106, 136, 219, 329, 476, 488
CviQI GTAC 1 cut(s) 346
DpnI GATC 4 cut(s) 112, 242, 379, 410
DpnII GATC 4 cut(s) 110, 240, 377, 408
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 187, 466
Eco31I GGTCTC 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 2 cut(s) 187, 466
ErhI CCWWGG 2 cut(s) 187, 466
FaeI CATG 1 cut(s) 470
FaiI YATR 5 cut(s) 48, 262, 396, 414, 468
FatI CATG 1 cut(s) 466
FauI CCCGC 1 cut(s) 281
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 4 cut(s) 22, 134, 207, 486
FokI GGATG 2 cut(s) 112, 158
Fsp4HI GCNGC 4 cut(s) 22, 134, 207, 486
FspBI CTAG 2 cut(s) 18, 444
GluI GCNGC 4 cut(s) 22, 134, 207, 486
HaeIII GGCC 3 cut(s) 29, 40, 488
HapII CCGG 3 cut(s) 306, 358, 371
HgaI GACGC 1 cut(s) 187
Hin1II CATG 1 cut(s) 470
HinfI GANTC 3 cut(s) 253, 265, 382
HpaII CCGG 3 cut(s) 306, 358, 371
HphI GGTGA 2 cut(s) 111, 193
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 4 cut(s) 110, 258, 320, 387
Hpy188III TCNNGA 2 cut(s) 250, 306
Hpy8I GTNNAC 1 cut(s) 342
Hpy99I CGWCG 2 cut(s) 94, 284
HpyCH4III ACNGT 4 cut(s) 70, 301, 325, 455
HpyCH4IV ACGT 3 cut(s) 344, 400, 429
HpyCH4V TGCA 2 cut(s) 367, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 494
HpySE526I ACGT 3 cut(s) 344, 400, 429
Hsp92II CATG 1 cut(s) 470
Kpn2I TCCGGA 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 4 cut(s) 110, 240, 377, 408
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 153, 319, 371, 384, 457, 477
Lsp1109I GCAGC 2 cut(s) 145, 193
LweI GCATC 3 cut(s) 180, 431, 472
MaeI CTAG 2 cut(s) 18, 444
MaeII ACGT 3 cut(s) 344, 400, 429
MaeIII GTNAC 2 cut(s) 199, 458
MalI GATC 4 cut(s) 112, 242, 379, 410
MboI GATC 4 cut(s) 110, 240, 377, 408
MboII GAAGA 2 cut(s) 172, 224
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 2 cut(s) 298, 355
MnlI CCTC 6 cut(s) 19, 139, 158, 185, 188, 194
MroI TCCGGA 1 cut(s) 305
MseI TTAA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 3 cut(s) 306, 358, 371
MspR9I CCNGG 3 cut(s) 359, 371, 492
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 482, 494
NciI CCSGG 2 cut(s) 359, 371
NcoI CCATGG 1 cut(s) 466
NdeII GATC 4 cut(s) 110, 240, 377, 408
NlaIII CATG 1 cut(s) 470
NlaIV GGNNCC 1 cut(s) 489
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 250
PctI GAATGC 1 cut(s) 369
PfeI GAWTC 2 cut(s) 265, 382
PkrI GCNGC 4 cut(s) 23, 135, 208, 487
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 3 cut(s) 28, 39, 487
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 4 cut(s) 22, 134, 207, 486
Sau3AI GATC 4 cut(s) 110, 240, 377, 408
Sau96I GGNCC 3 cut(s) 28, 39, 487
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 3 cut(s) 359, 371, 492
SduI GDGCHC 1 cut(s) 216
SetI ASST 6 cut(s) 14, 108, 138, 347, 403, 432
SfaNI GCATC 3 cut(s) 180, 431, 472
Sfr274I CTCGAG 1 cut(s) 250
SlaI CTCGAG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 43
SsiI CCGC 7 cut(s) 5, 21, 57, 204, 288, 349, 485
SspI AATATT 1 cut(s) 35
SspMI CTAG 2 cut(s) 18, 444
StyD4I CCNGG 3 cut(s) 357, 369, 490
StyI CCWWGG 2 cut(s) 187, 466
TaaI ACNGT 4 cut(s) 70, 301, 325, 455
TaiI ACGT 3 cut(s) 347, 403, 432
TaqI TCGA 2 cut(s) 251, 380
TasI AATT 1 cut(s) 43
TauI GCSGC 2 cut(s) 24, 488
TfiI GAWTC 2 cut(s) 265, 382
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 2 cut(s) 133, 206
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 211
TspRI CASTG 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 250
XspI CTAG 2 cut(s) 18, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.