FvH4_5g12770

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015955
Physical Location & Seq
Reverse (-)
7216195 .. 7217245
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12770.t1

Sequence Viewer

Length: 708 bp
ATGAGCTTAAAGCTAGAACAGGTCAGTCTCAGATCCGACACCCATCTAGGAGTCCCAACCCCCTCCTCCCTCCACGTGTCCCTCTGCATGTCATCTTCCCCACCACCTGTCTTCTCCTCCCCCATTTTTATGTCTTCATCTTCTCTCTCCCTCACTTCTCTATGCCACTTTCTCTCCTTGCCTCACTCTCTCATCTCCCCCATGGCGGACCGTCACCAGCAACTCCAGCCAGCCCAGACCCACCACCAGCAGCAGCACCGATCACAAAGGTCCTCCCACGGCGGCAGTTTCCTAAGTAAACTCCAAAGCCACGTCCCAAACTCCACGCAGCTCATCGGACTACTCACCCTCCTCGTCTCTGGCGGCATTCTCCTACTCCTCACAGGAATCACCATCACCGTTACGGTTTTAGGGCTTATCTTCTTCACTCCTATCCTCATCGTTTCCAGCCCCATATGGGTCCCACTCGGGACGGTCCTGTTCCTTGCAACGGCCGGGTTCGTGTCCATGTGCGGCTTCGGCGCCGCCGCCGTGGGCGGGTTGTCGTGGATGTACAGGTACTTTAAAGGGATGCACCCGCCCGGTTCGGACCGGGTTGACTACGCTCGGAGCAGGATTTACGACACGGCTAGCCACGTCAAGGACTATGCTAAAGAGTATGGTGGGTATTTGCATAGTAAGGTCAAGGATGCAGCTCCGGGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

236

Amino Acids

25.31

Weight (kDa)

9.4

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 109 - 221 5.7e-46 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 521
AciI CCGC 8 cut(s) 206, 282, 363, 513, 525, 528, 537, 578
AclWI GGATC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 492
AcvI CACGTG 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 522
AfaI GTAC 2 cut(s) 554, 560
AfiI CCNNNNNNNGG 5 cut(s) 205, 457, 490, 537, 640
AflIII ACRYGT 1 cut(s) 75
AjiI CACGTC 2 cut(s) 313, 637
AluBI AGCT 5 cut(s) 6, 13, 331, 695, 704
AluI AGCT 5 cut(s) 6, 13, 331, 695, 704
Alw26I GTCTC 2 cut(s) 32, 361
AlwI GGATC 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 1 cut(s) 492
ApeKI GCWGC 4 cut(s) 250, 253, 328, 692
AspLEI GCGC 1 cut(s) 524
AspS9I GGNCC 5 cut(s) 208, 270, 460, 475, 589
AsuC2I CCSGG 4 cut(s) 496, 582, 593, 699
AsuHPI GGTGA 4 cut(s) 206, 337, 382, 388
AsuNHI GCTAGC 1 cut(s) 629
AvaI CYCGRG 1 cut(s) 467
AvaII GGWCC 5 cut(s) 208, 270, 460, 475, 589
BanI GGYRCC 1 cut(s) 521
BbrPI CACGTG 1 cut(s) 76
BbsI GAAGAC 2 cut(s) 103, 126
BbvI GCAGC 4 cut(s) 262, 265, 340, 704
BccI CCATC 2 cut(s) 51, 401
BceAI ACGGC 4 cut(s) 295, 507, 515, 642
BcnI CCSGG 4 cut(s) 496, 582, 593, 699
BcoDI GTCTC 2 cut(s) 32, 361
BfaI CTAG 3 cut(s) 14, 47, 630
BfoI RGCGCY 1 cut(s) 525
BisI GCNGC 9 cut(s) 251, 254, 283, 329, 364, 514, 525, 528, 693
BlsI GCNGC 9 cut(s) 252, 255, 284, 330, 365, 515, 526, 529, 694
Bme1390I CCNGG 4 cut(s) 496, 582, 593, 699
Bme18I GGWCC 5 cut(s) 208, 270, 460, 475, 589
BmeT110I CYCGRG 1 cut(s) 467
BmgBI CACGTC 2 cut(s) 313, 637
BmgT120I GGNCC 5 cut(s) 208, 270, 460, 475, 589
BmiI GGNNCC 3 cut(s) 461, 462, 523
BmrFI CCNGG 4 cut(s) 496, 582, 593, 699
BmsI GCATC 2 cut(s) 561, 679
BmtI GCTAGC 1 cut(s) 633
BpiI GAAGAC 2 cut(s) 103, 126
BpmI CTGGAG 1 cut(s) 209
BpuMI CCSGG 4 cut(s) 496, 582, 593, 699
BsaAI YACGTR 1 cut(s) 76
BsaHI GRCGYC 1 cut(s) 522
BsaJI CCNNGG 3 cut(s) 201, 277, 531
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 333, 363
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 457, 490, 537, 640
BseDI CCNNGG 3 cut(s) 201, 277, 531
BseGI GGATG 3 cut(s) 555, 576, 694
BseLI CCNNNNNNNGG 5 cut(s) 205, 457, 490, 537, 640
BseMII CTCAG 1 cut(s) 43
BseRI GAGGAG 4 cut(s) 55, 106, 341, 368
BseX3I CGGCCG 1 cut(s) 492
BseXI GCAGC 4 cut(s) 262, 265, 340, 704
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 1 cut(s) 494
BshNI GGYRCC 1 cut(s) 521
BsiEI CGRYCG 1 cut(s) 495
BsiHKCI CYCGRG 1 cut(s) 467
BsiSI CCGG 4 cut(s) 495, 582, 592, 698
BslFI GGGAC 5 cut(s) 38, 64, 299, 446, 484
BslI CCNNNNNNNGG 5 cut(s) 205, 457, 490, 537, 640
BsmAI GTCTC 2 cut(s) 32, 361
BsmBI CGTCTC 1 cut(s) 361
BsmFI GGGAC 5 cut(s) 38, 64, 299, 446, 484
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 1 cut(s) 494
BsoBI CYCGRG 1 cut(s) 467
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 2 cut(s) 32, 260
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 8 cut(s) 206, 282, 363, 513, 525, 528, 537, 578
BspANI GGCC 1 cut(s) 494
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 461, 462, 523
BspOI GCTAGC 1 cut(s) 633
BspPI GGATC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 521
BsrGI TGTACA 1 cut(s) 552
BssECI CCNNGG 3 cut(s) 201, 277, 531
BssMI GATC 2 cut(s) 32, 260
BssNI GRCGYC 1 cut(s) 522
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 4 cut(s) 212, 400, 406, 475
BstACI GRCGYC 1 cut(s) 522
BstAUI TGTACA 1 cut(s) 552
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 231, 631
BstDEI CTNAG 2 cut(s) 29, 293
BstDSI CCRYGG 3 cut(s) 201, 277, 531
BstF5I GGATG 3 cut(s) 555, 576, 694
BstH2I RGCGCY 1 cut(s) 525
BstHHI GCGC 1 cut(s) 524
BstKTI GATC 2 cut(s) 35, 263
BstMAI GTCTC 2 cut(s) 32, 361
BstMBI GATC 2 cut(s) 32, 260
BstMCI CGRYCG 1 cut(s) 495
BstMWI GCNNNNNNNGC 3 cut(s) 226, 519, 701
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 4 cut(s) 494, 580, 591, 697
BstV1I GCAGC 4 cut(s) 262, 265, 340, 704
BstV2I GAAGAC 2 cut(s) 103, 126
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BstZI CGGCCG 1 cut(s) 492
BsuRI GGCC 1 cut(s) 494
BtgI CCRYGG 3 cut(s) 201, 277, 531
BtrI CACGTC 2 cut(s) 313, 637
BtsCI GGATG 3 cut(s) 555, 576, 694
Cac8I GCNNGC 2 cut(s) 231, 631
CfoI GCGC 1 cut(s) 524
Cfr13I GGNCC 5 cut(s) 208, 270, 460, 475, 589
CpoI CGGWCCG 2 cut(s) 208, 589
Csp6I GTAC 2 cut(s) 553, 559
CspI CGGWCCG 2 cut(s) 208, 589
CviAII CATG 3 cut(s) 88, 202, 508
CviQI GTAC 2 cut(s) 553, 559
DdeI CTNAG 2 cut(s) 29, 293
DinI GGCGCC 1 cut(s) 523
DpnI GATC 2 cut(s) 34, 262
DpnII GATC 2 cut(s) 32, 260
DraI TTTAAA 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 492
EagI CGGCCG 1 cut(s) 492
EciI GGCGGA 1 cut(s) 221
EclXI CGGCCG 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 5 cut(s) 208, 270, 460, 475, 589
Eco52I CGGCCG 1 cut(s) 492
Eco72I CACGTG 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 467
EcoO109I RGGNCCY 2 cut(s) 270, 460
EcoT14I CCWWGG 1 cut(s) 201
EgeI GGCGCC 1 cut(s) 523
EheI GGCGCC 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 3 cut(s) 91, 205, 511
FaqI GGGAC 5 cut(s) 38, 64, 299, 446, 484
FatI CATG 3 cut(s) 87, 201, 507
FauI CCCGC 2 cut(s) 530, 585
FauNDI CATATG 1 cut(s) 455
Fnu4HI GCNGC 9 cut(s) 251, 254, 283, 329, 364, 514, 525, 528, 693
FokI GGATG 3 cut(s) 562, 583, 701
Fsp4HI GCNGC 9 cut(s) 251, 254, 283, 329, 364, 514, 525, 528, 693
FspBI CTAG 3 cut(s) 14, 47, 630
GlaI GCGC 1 cut(s) 523
GluI GCNGC 9 cut(s) 251, 254, 283, 329, 364, 514, 525, 528, 693
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 525
HaeIII GGCC 1 cut(s) 494
HapII CCGG 4 cut(s) 495, 582, 592, 698
HhaI GCGC 1 cut(s) 524
Hin1I GRCGYC 1 cut(s) 522
Hin1II CATG 3 cut(s) 91, 205, 511
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 2 cut(s) 51, 387
HpaII CCGG 4 cut(s) 495, 582, 592, 698
HphI GGTGA 4 cut(s) 206, 337, 382, 388
Hpy166II GTNNAC 2 cut(s) 299, 598
Hpy188I TCNGA 5 cut(s) 32, 37, 338, 589, 609
Hpy188III TCNNGA 1 cut(s) 469
Hpy8I GTNNAC 2 cut(s) 299, 598
HpyCH4III ACNGT 4 cut(s) 212, 400, 406, 475
HpyCH4IV ACGT 3 cut(s) 75, 312, 636
HpyCH4V TGCA 5 cut(s) 87, 488, 574, 673, 692
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 519, 701
HpyF3I CTNAG 2 cut(s) 29, 293
HpySE526I ACGT 3 cut(s) 75, 312, 636
Hsp92I GRCGYC 1 cut(s) 522
Hsp92II CATG 3 cut(s) 91, 205, 511
HspAI GCGC 1 cut(s) 522
KasI GGCGCC 1 cut(s) 521
KflI GGGWCCC 1 cut(s) 460
Kzo9I GATC 2 cut(s) 32, 260
LmnI GCTCC 3 cut(s) 609, 700, 701
Lsp1109I GCAGC 4 cut(s) 262, 265, 340, 704
LweI GCATC 2 cut(s) 561, 679
MaeI CTAG 3 cut(s) 14, 47, 630
MaeII ACGT 3 cut(s) 75, 312, 636
MaeIII GTNAC 2 cut(s) 212, 400
MalI GATC 2 cut(s) 34, 262
MboI GATC 2 cut(s) 32, 260
MboII GAAGA 6 cut(s) 87, 103, 126, 132, 412, 415
MflI RGATCY 1 cut(s) 32
Mly113I GGCGCC 1 cut(s) 522
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 60
MseI TTAA 3 cut(s) 8, 564, 706
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 4 cut(s) 495, 582, 592, 698
MspR9I CCNGG 4 cut(s) 496, 582, 593, 699
Mva1269I GAATGC 1 cut(s) 366
MwoI GCNNNNNNNGC 3 cut(s) 226, 519, 701
NarI GGCGCC 1 cut(s) 522
NciI CCSGG 4 cut(s) 496, 582, 593, 699
NcoI CCATGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 455
NdeII GATC 2 cut(s) 32, 260
NheI GCTAGC 1 cut(s) 629
NlaIII CATG 3 cut(s) 91, 205, 511
NlaIV GGNNCC 3 cut(s) 461, 462, 523
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 91
PctI GAATGC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 387
PfoI TCCNGGA 1 cut(s) 697
PkrI GCNGC 9 cut(s) 252, 255, 284, 330, 365, 515, 526, 529, 694
PleI GAGTC 1 cut(s) 59
PluTI GGCGCC 1 cut(s) 525
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
PpsI GAGTC 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 76
PpuMI RGGWCCY 2 cut(s) 270, 460
Psp5II RGGWCCY 2 cut(s) 270, 460
PspCI CACGTG 1 cut(s) 76
PspN4I GGNNCC 3 cut(s) 461, 462, 523
PspPI GGNCC 5 cut(s) 208, 270, 460, 475, 589
PspPPI RGGWCCY 2 cut(s) 270, 460
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 2 cut(s) 554, 560
RsaNI GTAC 2 cut(s) 553, 559
RseI CAYNNNNRTG 1 cut(s) 128
Rsr2I CGGWCCG 2 cut(s) 208, 589
RsrII CGGWCCG 2 cut(s) 208, 589
SaqAI TTAA 3 cut(s) 8, 564, 706
SatI GCNGC 9 cut(s) 251, 254, 283, 329, 364, 514, 525, 528, 693
Sau3AI GATC 2 cut(s) 32, 260
Sau96I GGNCC 5 cut(s) 208, 270, 460, 475, 589
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 4 cut(s) 496, 582, 593, 699
SfaNI GCATC 2 cut(s) 561, 679
SfoI GGCGCC 1 cut(s) 523
SinI GGWCC 5 cut(s) 208, 270, 460, 475, 589
SmiMI CAYNNNNRTG 1 cut(s) 128
SsiI CCGC 8 cut(s) 206, 282, 363, 513, 525, 528, 537, 578
SspDI GGCGCC 1 cut(s) 521
SspMI CTAG 3 cut(s) 14, 47, 630
StyD4I CCNGG 4 cut(s) 494, 580, 591, 697
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 4 cut(s) 212, 400, 406, 475
TaiI ACGT 3 cut(s) 78, 315, 639
TatI WGTACW 1 cut(s) 552
TauI GCSGC 5 cut(s) 285, 366, 516, 527, 530
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 3 cut(s) 8, 564, 706
Tru9I TTAA 3 cut(s) 8, 564, 706
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 4 cut(s) 250, 253, 328, 692
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 126
VpaK11BI GGWCC 5 cut(s) 208, 270, 460, 475, 589
XceI RCATGY 1 cut(s) 91
XspI CTAG 3 cut(s) 14, 47, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.