MD17G1068400.v1.1

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015955
Physical Location & Seq
Reverse (-)
5544980 .. 5545231
252 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1068400.v1.1.491

Sequence Viewer

Length: 252 bp
ATGGGTCCCCTTGGCATCATCCTCGTCCTCACTGCCGGCTTCTTCGTGTCCATGTGCGGGTTCGGCGCCGCAGCCGTGGCCGGTTTGTCTTGGATGTACAGGTACTTCAAGGGGATGCACCCGCCCGGTTCGGACCGGGTCGACTACGCAAGGAGCCGGATTTACGATACGGCGAGCCACGTCAAGGATTATGCTAGAGAGTATGGCGGATATTTACACAGTAAGGTCAAGGATGCAGCTCCCGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

84

Amino Acids

9.0

Weight (kDa)

9.17

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 3 - 69 3.6e-22 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 141
AciI CCGC 4 cut(s) 57, 69, 122, 207
AcoI YGGCCR 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 98, 104
AfiI CCNNNNNNNGG 2 cut(s) 57, 184
AgsI TTSAA 1 cut(s) 109
AjiI CACGTC 1 cut(s) 181
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 71, 236
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 5, 133
AsuC2I CCSGG 3 cut(s) 126, 137, 243
AvaII GGWCC 2 cut(s) 5, 133
BanI GGYRCC 1 cut(s) 65
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbvI GCAGC 2 cut(s) 83, 248
BceAI ACGGC 2 cut(s) 59, 186
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BcnI CCSGG 3 cut(s) 126, 137, 243
BfaI CTAG 1 cut(s) 195
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 3 cut(s) 69, 72, 237
BlsI GCNGC 3 cut(s) 70, 73, 238
Bme1390I CCNGG 3 cut(s) 126, 137, 243
Bme18I GGWCC 2 cut(s) 5, 133
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 5, 133
BmiI GGNNCC 4 cut(s) 6, 7, 67, 155
BmrFI CCNGG 3 cut(s) 126, 137, 243
BmsI GCATC 3 cut(s) 24, 105, 223
BpuMI CCSGG 3 cut(s) 126, 137, 243
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 10, 75
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 184
Bse118I RCCGGY 2 cut(s) 35, 80
BseDI CCNNGG 2 cut(s) 10, 75
BseGI GGATG 4 cut(s) 18, 99, 120, 238
BseLI CCNNNNNNNGG 2 cut(s) 57, 184
BseXI GCAGC 2 cut(s) 83, 248
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 6 cut(s) 36, 81, 126, 136, 157, 243
BslI CCNNNNNNNGG 2 cut(s) 57, 184
BsnI GGCC 1 cut(s) 80
Bsp1407I TGTACA 1 cut(s) 96
BspACI CCGC 4 cut(s) 57, 69, 122, 207
BspANI GGCC 1 cut(s) 80
BspLI GGNNCC 4 cut(s) 6, 7, 67, 155
BspT107I GGYRCC 1 cut(s) 65
BsrFI RCCGGY 2 cut(s) 35, 80
BsrGI TGTACA 1 cut(s) 96
BssAI RCCGGY 2 cut(s) 35, 80
BssECI CCNNGG 2 cut(s) 10, 75
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 66
BstAUI TGTACA 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 37, 175
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 4 cut(s) 18, 99, 120, 238
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstMWI GCNNNNNNNGC 3 cut(s) 63, 77, 245
BstSCI CCNGG 3 cut(s) 124, 135, 241
BstV1I GCAGC 2 cut(s) 83, 248
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 75
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 4 cut(s) 18, 99, 120, 238
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 37, 175
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 2 cut(s) 35, 80
Cfr13I GGNCC 2 cut(s) 5, 133
CpoI CGGWCCG 1 cut(s) 133
Csp6I GTAC 2 cut(s) 97, 103
CspI CGGWCCG 1 cut(s) 133
CviAII CATG 1 cut(s) 52
CviJI RGCY 6 cut(s) 39, 74, 80, 156, 177, 239
CviKI_1 RGCY 6 cut(s) 39, 74, 80, 156, 177, 239
CviQI GTAC 2 cut(s) 97, 103
DinI GGCGCC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 78
EciI GGCGGA 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 5, 133
EcoO109I RGGNCCY 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 10
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 55
FaiI YATR 3 cut(s) 53, 192, 204
FatI CATG 1 cut(s) 51
FauI CCCGC 2 cut(s) 50, 129
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 69, 72, 237
FokI GGATG 4 cut(s) 5, 106, 127, 245
Fsp4HI GCNGC 3 cut(s) 69, 72, 237
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 67
GluI GCNGC 3 cut(s) 69, 72, 237
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 80
HapII CCGG 6 cut(s) 36, 81, 126, 136, 157, 243
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HpaII CCGG 6 cut(s) 36, 81, 126, 136, 157, 243
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 118, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 77, 245
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
KflI GGGWCCC 1 cut(s) 5
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
LmnI GCTCC 2 cut(s) 153, 244
LpnPI CCDG 6 cut(s) 49, 85, 94, 139, 149, 170
Lsp1109I GCAGC 2 cut(s) 83, 248
LweI GCATC 3 cut(s) 24, 105, 223
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 180
MboII GAAGA 1 cut(s) 34
Mly113I GGCGCC 1 cut(s) 66
MnlI CCTC 2 cut(s) 32, 38
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 1 cut(s) 250
MspI CCGG 6 cut(s) 36, 81, 126, 136, 157, 243
MspR9I CCNGG 3 cut(s) 126, 137, 243
MwoI GCNNNNNNNGC 3 cut(s) 63, 77, 245
NaeI GCCGGC 1 cut(s) 37
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 3 cut(s) 126, 137, 243
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 4 cut(s) 6, 7, 67, 155
PdiI GCCGGC 1 cut(s) 37
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 70, 73, 238
PluTI GGCGCC 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 4 cut(s) 6, 7, 67, 155
PspPI GGNCC 2 cut(s) 5, 133
PspPPI RGGWCCY 1 cut(s) 5
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 2 cut(s) 98, 104
RsaNI GTAC 2 cut(s) 97, 103
Rsr2I CGGWCCG 1 cut(s) 133
RsrII CGGWCCG 1 cut(s) 133
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 3 cut(s) 69, 72, 237
Sau96I GGNCC 2 cut(s) 5, 133
ScrFI CCNGG 3 cut(s) 126, 137, 243
SetI ASST 4 cut(s) 104, 183, 228, 241
SfaNI GCATC 3 cut(s) 24, 105, 223
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 2 cut(s) 5, 133
SsiI CCGC 4 cut(s) 57, 69, 122, 207
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 3 cut(s) 124, 135, 241
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 141
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TscAI CASTG 1 cut(s) 37
TseI GCWGC 2 cut(s) 71, 236
TspRI CASTG 1 cut(s) 37
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 5, 133
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.