RLG00000004973

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015955
Physical Location & Seq
Reverse (-)
64117365 .. 64117877
513 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004973

Sequence Viewer

Length: 513 bp
ATGGCGGACCGTCACCAGCAACCCCACCAGGCCCAGAACCAGAACCACCAGCAGCACCGATTATCAGCCCAAACCAGACCCTCCCACACCTCGTTCCTAAGTAAACTCCAAGGCCACGTCCCAAATTCCACTCAACTCATCGGACTACTCACCCTCCTCGTCTCTGGCGGTATTCTCCTACTCCTGACAGGAATCACAATCACCGTTACGGTTCTGGGACTCATCTTCTTCACTCCAATCCTCATAGTTTCCAGCCCGATATGGGTCCCACTCGGGACGGTGCTGTTCCTGACCGCGGCCGGGTTCGTGTCCATGTGCGGGTTCGGGGCTGCCGTCGTGGGCGGGTTGTCGTGGATGTACAGGTACTTCAAGGGAATGCACCCGCCCGGTTCGGACCGGGTTGATTATGCTCGGAGCAGGATATACGACACGGCTAGCCACGTCAAGGACTATGCTAAAGAGTACGGTGGGTATTTGCAAAGTAAGGTCAAGGATGCAGCTCCGGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

171

Amino Acids

18.49

Weight (kDa)

9.67

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 44 - 156 1.6e-45 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 296
AciI CCGC 7 cut(s) 5, 168, 294, 296, 318, 342, 383
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 3 cut(s) 359, 365, 464
AfiI CCNNNNNNNGG 5 cut(s) 262, 295, 300, 318, 445
AgsI TTSAA 1 cut(s) 370
AjiI CACGTC 2 cut(s) 118, 442
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 500, 509
AluI AGCT 2 cut(s) 500, 509
Alw26I GTCTC 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 3 cut(s) 30, 112, 297
ApeKI GCWGC 3 cut(s) 52, 329, 497
ApoI RAATTY 1 cut(s) 124
AspS9I GGNCC 4 cut(s) 7, 31, 265, 394
AsuC2I CCSGG 4 cut(s) 301, 387, 398, 504
AsuHPI GGTGA 3 cut(s) 5, 142, 193
AsuNHI GCTAGC 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 3 cut(s) 7, 265, 394
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BbvI GCAGC 3 cut(s) 64, 316, 509
BceAI ACGGC 2 cut(s) 317, 447
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 4 cut(s) 301, 387, 398, 504
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 435
BisI GCNGC 4 cut(s) 53, 297, 330, 498
BlsI GCNGC 4 cut(s) 54, 298, 331, 499
Bme1390I CCNGG 5 cut(s) 29, 301, 387, 398, 504
Bme18I GGWCC 3 cut(s) 7, 265, 394
BmeT110I CYCGRG 1 cut(s) 272
BmgBI CACGTC 2 cut(s) 118, 442
BmgT120I GGNCC 4 cut(s) 7, 31, 265, 394
BmiI GGNNCC 2 cut(s) 266, 267
BmrFI CCNGG 5 cut(s) 29, 301, 387, 398, 504
BmsI GCATC 1 cut(s) 484
BmtI GCTAGC 1 cut(s) 438
BpuMI CCSGG 4 cut(s) 301, 387, 398, 504
BsaJI CCNNGG 2 cut(s) 109, 294
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 295, 300, 318, 445
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 109, 294
BseGI GGATG 2 cut(s) 360, 499
BseLI CCNNNNNNNGG 5 cut(s) 262, 295, 300, 318, 445
BseRI GAGGAG 1 cut(s) 146
BseX3I CGGCCG 1 cut(s) 297
BseXI GCAGC 3 cut(s) 64, 316, 509
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 3 cut(s) 32, 114, 299
BsiEI CGRYCG 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 4 cut(s) 300, 387, 397, 503
BslFI GGGAC 4 cut(s) 104, 231, 251, 289
BslI CCNNNNNNNGG 5 cut(s) 262, 295, 300, 318, 445
BsmAI GTCTC 1 cut(s) 166
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 4 cut(s) 104, 231, 251, 289
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 3 cut(s) 32, 114, 299
BsoBI CYCGRG 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 357
BspACI CCGC 7 cut(s) 5, 168, 294, 296, 318, 342, 383
BspANI GGCC 3 cut(s) 32, 114, 299
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 266, 267
BspOI GCTAGC 1 cut(s) 438
BsrGI TGTACA 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 109, 294
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 5 cut(s) 11, 205, 211, 280, 467
BstAUI TGTACA 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 98, 510
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 360, 499
BstFNI CGCG 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 166
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 5 cut(s) 27, 299, 385, 396, 502
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 64, 316, 509
BstZI CGGCCG 1 cut(s) 297
BsuRI GGCC 3 cut(s) 32, 114, 299
BtgI CCRYGG 1 cut(s) 294
BtrI CACGTC 2 cut(s) 118, 442
BtsCI GGATG 2 cut(s) 360, 499
Cac8I GCNNGC 1 cut(s) 436
Cfr13I GGNCC 4 cut(s) 7, 31, 265, 394
Cfr42I CCGCGG 1 cut(s) 297
CpoI CGGWCCG 2 cut(s) 7, 394
Csp6I GTAC 3 cut(s) 358, 364, 463
CspI CGGWCCG 2 cut(s) 7, 394
CviAII CATG 1 cut(s) 313
CviQI GTAC 3 cut(s) 358, 364, 463
DdeI CTNAG 2 cut(s) 98, 510
EaeI YGGCCR 1 cut(s) 297
EagI CGGCCG 1 cut(s) 297
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 109
Eco47I GGWCC 3 cut(s) 7, 265, 394
Eco52I CGGCCG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 1 cut(s) 316
FaiI YATR 6 cut(s) 245, 262, 314, 408, 424, 453
FaqI GGGAC 4 cut(s) 104, 231, 251, 289
FatI CATG 1 cut(s) 312
FauI CCCGC 3 cut(s) 311, 335, 390
Fnu4HI GCNGC 4 cut(s) 53, 297, 330, 498
FokI GGATG 2 cut(s) 367, 506
Fsp4HI GCNGC 4 cut(s) 53, 297, 330, 498
FspBI CTAG 1 cut(s) 435
GluI GCNGC 4 cut(s) 53, 297, 330, 498
HaeIII GGCC 3 cut(s) 32, 114, 299
HapII CCGG 4 cut(s) 300, 387, 397, 503
Hin1II CATG 1 cut(s) 316
HinfI GANTC 2 cut(s) 192, 219
HpaII CCGG 4 cut(s) 300, 387, 397, 503
HphI GGTGA 3 cut(s) 5, 142, 193
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 3 cut(s) 143, 394, 414
Hpy188III TCNNGA 3 cut(s) 184, 274, 289
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 1 cut(s) 338
HpyCH4III ACNGT 5 cut(s) 11, 205, 211, 280, 467
HpyCH4IV ACGT 2 cut(s) 117, 441
HpyCH4V TGCA 3 cut(s) 379, 478, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 2 cut(s) 98, 510
HpySE526I ACGT 2 cut(s) 117, 441
Hsp92II CATG 1 cut(s) 316
KflI GGGWCCC 1 cut(s) 265
KspI CCGCGG 1 cut(s) 297
LmnI GCTCC 3 cut(s) 414, 505, 506
Lsp1109I GCAGC 3 cut(s) 64, 316, 509
LweI GCATC 1 cut(s) 484
MaeI CTAG 1 cut(s) 435
MaeII ACGT 2 cut(s) 117, 441
MaeIII GTNAC 2 cut(s) 11, 205
MboII GAAGA 2 cut(s) 217, 220
MluCI AATT 1 cut(s) 124
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 5 cut(s) 91, 100, 164, 167, 251
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 4 cut(s) 300, 387, 397, 503
MspR9I CCNGG 5 cut(s) 29, 301, 387, 398, 504
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 506
NciI CCSGG 4 cut(s) 301, 387, 398, 504
NheI GCTAGC 1 cut(s) 434
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 2 cut(s) 266, 267
NmuCI GTSAC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 502
PkrI GCNGC 4 cut(s) 54, 298, 331, 499
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 266, 267
PspPI GGNCC 4 cut(s) 7, 31, 265, 394
PspPPI RGGWCCY 1 cut(s) 265
RsaI GTAC 3 cut(s) 359, 365, 464
RsaNI GTAC 3 cut(s) 358, 364, 463
Rsr2I CGGWCCG 2 cut(s) 7, 394
RsrII CGGWCCG 2 cut(s) 7, 394
SacII CCGCGG 1 cut(s) 297
SatI GCNGC 4 cut(s) 53, 297, 330, 498
Sau96I GGNCC 4 cut(s) 7, 31, 265, 394
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 5 cut(s) 29, 301, 387, 398, 504
SetI ASST 7 cut(s) 92, 120, 365, 444, 489, 502, 511
SfaNI GCATC 1 cut(s) 484
Sfr303I CCGCGG 1 cut(s) 297
SgrBI CCGCGG 1 cut(s) 297
SinI GGWCC 3 cut(s) 7, 265, 394
Sse9I AATT 1 cut(s) 124
SsiI CCGC 7 cut(s) 5, 168, 294, 296, 318, 342, 383
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 5 cut(s) 27, 299, 385, 396, 502
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 5 cut(s) 11, 205, 211, 280, 467
TaiI ACGT 2 cut(s) 120, 444
TasI AATT 1 cut(s) 124
TatI WGTACW 1 cut(s) 357
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 192
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 3 cut(s) 52, 329, 497
Tsp45I GTSAC 1 cut(s) 11
VpaK11BI GGWCC 3 cut(s) 7, 265, 394
XapI RAATTY 1 cut(s) 124
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.