Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Reverse (-)

18176772 .. 18179264

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGGAGGAAGAAGGGATTGCCGGAGTTCGAAGAGTCGGCGCCGGATGGATTCGATCCTGAGAATCCGTACAAGGATCCGGTTGCGATGGTGGAGATGAGAGAACACATTGTTCGTGAGAAATGGATCCATATCGAGAAGGCTAAGATCTTACGTGAGAAGGTCAAATGGTGTTACCGCGTCGAAGGCGTTAACCATTACCAGAAGTGTCGTCATCTTGTTCAGCAGTATCTCGATGCCACTCGCGGCGTTGGTTGGGGCAAAGACCACCGTCCTATCTCTCTTCACGGTCCTAAGCCAGTAGCTGTTGAAGAAGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

107

Amino Acids

12.53

Weight (kDa)

7.82

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccII	CGCG	2 cut(s)	180, 246
AciI	CCGC	2 cut(s)	178, 246
AclWI	GGATC	5 cut(s)	50, 71, 84, 121, 134
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	2 cut(s)	305, 317
AluI	AGCT	2 cut(s)	305, 317
AlwI	GGATC	5 cut(s)	50, 71, 84, 121, 134
AlwNI	CAGNNNCTG	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	290
BamHI	GGATCC	2 cut(s)	76, 126
BanI	GGYRCC	1 cut(s)	40
BccI	CCATC	2 cut(s)	41, 82
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	3 cut(s)	42, 78, 128
BmsI	GCATC	1 cut(s)	226
BoxI	GACNNNNGTC	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	131
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	299
Bsh1236I	CGCG	2 cut(s)	180, 246
BshNI	GGYRCC	1 cut(s)	40
BsiSI	CCGG	3 cut(s)	23, 44, 80
Bsp119I	TTCGAA	1 cut(s)	30
Bsp143I	GATC	4 cut(s)	55, 76, 126, 147
BspACI	CCGC	2 cut(s)	178, 246
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	2 cut(s)	180, 246
BspLI	GGNNCC	3 cut(s)	42, 78, 128
BspPI	GGATC	5 cut(s)	50, 71, 84, 121, 134
BspT104I	TTCGAA	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	299
BssMI	GATC	4 cut(s)	55, 76, 126, 147
BssNI	GRCGYC	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	272, 290
Bst6I	CTCTTC	2 cut(s)	27, 288
BstACI	GRCGYC	1 cut(s)	41
BstBAI	YACGTR	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	30
BstDEI	CTNAG	3 cut(s)	60, 144, 294
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	2 cut(s)	180, 246
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	4 cut(s)	58, 79, 129, 150
BstMBI	GATC	4 cut(s)	55, 76, 126, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstPAI	GACNNNNGTC	1 cut(s)	270
BstUI	CGCG	2 cut(s)	180, 246
BstX2I	RGATCY	3 cut(s)	76, 126, 147
BstYI	RGATCY	3 cut(s)	76, 126, 147
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	70
CviJI	RGCY	4 cut(s)	143, 298, 305, 317
CviKI_1	RGCY	4 cut(s)	143, 298, 305, 317
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	3 cut(s)	60, 144, 294
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	4 cut(s)	57, 78, 128, 149
DpnII	GATC	4 cut(s)	55, 76, 126, 147
Eam1104I	CTCTTC	2 cut(s)	27, 288
EarI	CTCTTC	2 cut(s)	27, 288
Eco47I	GGWCC	1 cut(s)	290
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
FaiI	YATR	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	247
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	44
HapII	CCGG	3 cut(s)	23, 44, 80
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	35, 51, 64
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	3 cut(s)	23, 44, 80
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188III	TCNNGA	4 cut(s)	59, 116, 136, 233
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	7, 133, 154, 179
HpyCH4III	ACNGT	2 cut(s)	272, 290
HpyCH4IV	ACGT	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	3 cut(s)	60, 144, 294
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	1 cut(s)	41
KasI	GGCGCC	1 cut(s)	40
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	55, 76, 126, 147
LpnPI	CCDG	6 cut(s)	36, 57, 72, 93, 215, 312
LweI	GCATC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	4 cut(s)	57, 78, 128, 149
MboI	GATC	4 cut(s)	55, 76, 126, 147
MboII	GAAGA	4 cut(s)	22, 44, 275, 323
MflI	RGATCY	3 cut(s)	76, 126, 147
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	44
MseI	TTAA	1 cut(s)	192
MspI	CCGG	3 cut(s)	23, 44, 80
MvnI	CGCG	2 cut(s)	180, 246
MwoI	GCNNNNNNNGC	1 cut(s)	186
NarI	GGCGCC	1 cut(s)	41
NdeII	GATC	4 cut(s)	55, 76, 126, 147
NlaIV	GGNNCC	3 cut(s)	42, 78, 128
NspV	TTCGAA	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	51, 64
PkrI	GCNGC	1 cut(s)	248
PleI	GAGTC	1 cut(s)	43
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	155
PshAI	GACNNNNGTC	1 cut(s)	270
PspN4I	GGNNCC	3 cut(s)	42, 78, 128
PspPI	GGNCC	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	3 cut(s)	76, 126, 147
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	4 cut(s)	55, 76, 126, 147
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	44
SetI	ASST	4 cut(s)	157, 165, 307, 319
SfaNI	GCATC	1 cut(s)	226
SfoI	GGCGCC	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	30
SinI	GGWCC	1 cut(s)	290
SsiI	CCGC	2 cut(s)	178, 246
SspDI	GGCGCC	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	272, 290
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	5 cut(s)	30, 54, 135, 183, 234
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	2 cut(s)	51, 64
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.