Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Forward (+)

6323143 .. 6324579

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGGAGAAAGAAGGGATTACCGGAGTTCGAAGAGTCGGCGCCGGATGGCTTTGATCCGGAAAATCCATACAAGGATCCGGTGGCGATGGTTGAAATGAGAGAGCACATCGTTCGAGAGAAATGGATCCAAATCGAGAAGGCTAAGATCTTGCGTGAGAAGGTCAAATGGTGTTACCGCGTCGAAGGAGTCAATCACTATCAGAAATGTCGTCATCTTGTTCAGCAGTATCTCGATTCCACTCGCGGCGTCGGTTGGGGAAAGGATCATCGTCCTATTTCGCTCCACGGTCCCAAACCGGAGGCTGTTGAAGCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

106

Amino Acids

12.44

Weight (kDa)

7.81

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccII	CGCG	2 cut(s)	180, 246
AccIII	TCCGGA	1 cut(s)	58
AciI	CCGC	2 cut(s)	178, 246
AclWI	GGATC	6 cut(s)	50, 71, 84, 121, 134, 273
AcyI	GRCGYC	2 cut(s)	41, 249
AgsI	TTSAA	2 cut(s)	95, 311
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	6 cut(s)	50, 71, 84, 121, 134, 273
Aor13HI	TCCGGA	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	290
BamHI	GGATCC	2 cut(s)	76, 126
BanI	GGYRCC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	108
BccI	CCATC	2 cut(s)	41, 82
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	4 cut(s)	42, 78, 128, 292
Bpu14I	TTCGAA	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	131
BsaHI	GRCGYC	2 cut(s)	41, 249
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	4 cut(s)	22, 58, 79, 298
Bse8I	GATNNNNATC	1 cut(s)	131
BseAI	TCCGGA	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	131
Bsh1236I	CGCG	2 cut(s)	180, 246
BshNI	GGYRCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	5 cut(s)	23, 44, 59, 80, 299
BslFI	GGGAC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp13I	TCCGGA	1 cut(s)	58
Bsp143I	GATC	5 cut(s)	55, 76, 126, 147, 265
BspACI	CCGC	2 cut(s)	178, 246
BspEI	TCCGGA	1 cut(s)	58
BspFNI	CGCG	2 cut(s)	180, 246
BspLI	GGNNCC	4 cut(s)	42, 78, 128, 292
BspPI	GGATC	6 cut(s)	50, 71, 84, 121, 134, 273
BspT104I	TTCGAA	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	5 cut(s)	55, 76, 126, 147, 265
BssNI	GRCGYC	2 cut(s)	41, 249
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	2 cut(s)	41, 249
BstBI	TTCGAA	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	2 cut(s)	180, 246
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	5 cut(s)	58, 79, 129, 150, 268
BstMBI	GATC	5 cut(s)	55, 76, 126, 147, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstUI	CGCG	2 cut(s)	180, 246
BstX2I	RGATCY	3 cut(s)	76, 126, 147
BstYI	RGATCY	3 cut(s)	76, 126, 147
BtgI	CCRYGG	1 cut(s)	286
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	2 cut(s)	169, 238
CviJI	RGCY	4 cut(s)	51, 143, 305, 314
CviKI_1	RGCY	4 cut(s)	51, 143, 305, 314
DdeI	CTNAG	1 cut(s)	144
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	5 cut(s)	57, 78, 128, 149, 267
DpnII	GATC	5 cut(s)	55, 76, 126, 147, 265
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	290
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
FaiI	YATR	1 cut(s)	70
FaqI	GGGAC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	247
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	44
HapII	CCGG	5 cut(s)	23, 44, 59, 80, 299
HgaI	GACGC	2 cut(s)	169, 238
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	2 cut(s)	41, 249
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	3 cut(s)	35, 189, 236
HpaII	CCGG	5 cut(s)	23, 44, 59, 80, 299
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	4 cut(s)	59, 116, 136, 233
Hpy99I	CGWCG	2 cut(s)	185, 254
HpyAV	CCTTC	4 cut(s)	7, 133, 154, 179
HpyCH4III	ACNGT	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	144
Hsp92I	GRCGYC	2 cut(s)	41, 249
HspAI	GCGC	1 cut(s)	41
KasI	GGCGCC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	58
Kzo9I	GATC	5 cut(s)	55, 76, 126, 147, 265
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	5 cut(s)	36, 57, 72, 93, 312
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	5 cut(s)	57, 78, 128, 149, 267
MboI	GATC	5 cut(s)	55, 76, 126, 147, 265
MboII	GAAGA	1 cut(s)	44
MflI	RGATCY	3 cut(s)	76, 126, 147
MhlI	GDGCHC	1 cut(s)	108
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	44, 198
MnlI	CCTC	1 cut(s)	295
MroI	TCCGGA	1 cut(s)	58
MspI	CCGG	5 cut(s)	23, 44, 59, 80, 299
MvnI	CGCG	2 cut(s)	180, 246
MwoI	GCNNNNNNNGC	1 cut(s)	311
NarI	GGCGCC	1 cut(s)	41
NdeII	GATC	5 cut(s)	55, 76, 126, 147, 265
NlaIV	GGNNCC	4 cut(s)	42, 78, 128, 292
NspV	TTCGAA	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	248
PleI	GAGTC	2 cut(s)	43, 197
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	2 cut(s)	43, 197
PspN4I	GGNNCC	4 cut(s)	42, 78, 128, 292
PspPI	GGNCC	1 cut(s)	290
PsuI	RGATCY	3 cut(s)	76, 126, 147
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	5 cut(s)	55, 76, 126, 147, 265
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	2 cut(s)	44, 198
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	2 cut(s)	165, 316
SfoI	GGCGCC	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	30
SinI	GGWCC	1 cut(s)	290
SsiI	CCGC	2 cut(s)	178, 246
SspDI	GGCGCC	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	5 cut(s)	30, 115, 135, 183, 234
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.