Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Reverse (-)

5746420 .. 5748852

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG074000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGAAGGAAGAAGGGAGTGGCGGACTTCGACGAGTCGCCGCCGGATGACTTCGATCCGGCGAATCCGTACAAGGACCCGGTGGCGATGCTGGAGATGAGGGAGCACATCGTCCGAGAGAAGTGGATCCAAATAGAGAAGGCCAAGATTCTCCGGGACAAGCTCCGCTGGTGCTACCGCGTCGAAGGCATCAACCACCTCCAGAAGTGCCGCCTCCTCCGCGACCAGTACCTCGAGTCCACGCGCGGCATCGGTTGGGGCAAGGACCACCGCCCCTACGAGTTCCATGGCCCCAAGCTGGAGGTGAAGGTGGAGGCGGAGGAGTCGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

110

Amino Acids

13.08

Weight (kDa)

6.43

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	180, 222, 244, 246
AciI	CCGC	9 cut(s)	23, 41, 166, 178, 211, 220, 246, 271, 317
AclWI	GGATC	3 cut(s)	50, 121, 134
AfaI	GTAC	2 cut(s)	71, 230
AfiI	CCNNNNNNNGG	1 cut(s)	298
AluBI	AGCT	2 cut(s)	163, 298
AluI	AGCT	2 cut(s)	163, 298
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	3 cut(s)	50, 121, 134
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	141, 289
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	3 cut(s)	76, 265, 290
AsuC2I	CCSGG	2 cut(s)	80, 155
AsuHPI	GGTGA	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	76, 265
BamHI	GGATCC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	108
BcnI	CCSGG	2 cut(s)	80, 155
BisI	GCNGC	3 cut(s)	41, 211, 247
BlsI	GCNGC	3 cut(s)	42, 212, 248
Bme1390I	CCNGG	2 cut(s)	80, 155
Bme18I	GGWCC	2 cut(s)	76, 265
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	76, 265, 290
BmiI	GGNNCC	3 cut(s)	78, 128, 292
BmrFI	CCNGG	2 cut(s)	80, 155
BmsI	GCATC	3 cut(s)	78, 198, 258
BpmI	CTGGAG	3 cut(s)	113, 185, 320
BpuMI	CCSGG	2 cut(s)	80, 155
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	206
Bsh1236I	CGCG	4 cut(s)	180, 222, 244, 246
BshFI	GGCC	2 cut(s)	143, 291
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	4 cut(s)	44, 59, 80, 154
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	143, 291
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	55, 126
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	9 cut(s)	23, 41, 166, 178, 211, 220, 246, 271, 317
BspANI	GGCC	2 cut(s)	143, 291
BspFNI	CGCG	4 cut(s)	180, 222, 244, 246
BspLI	GGNNCC	3 cut(s)	78, 128, 292
BspPI	GGATC	3 cut(s)	50, 121, 134
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	55, 126
BssT1I	CCWWGG	1 cut(s)	286
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	4 cut(s)	180, 222, 244, 246
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	58, 129
BstMBI	GATC	2 cut(s)	55, 126
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 219
BstSCI	CCNGG	2 cut(s)	78, 153
BstUI	CGCG	4 cut(s)	180, 222, 244, 246
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	143, 291
BtgI	CCRYGG	1 cut(s)	286
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	3 cut(s)	76, 265, 290
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	70, 229
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	4 cut(s)	143, 163, 291, 298
CviKI_1	RGCY	4 cut(s)	143, 163, 291, 298
CviQI	GTAC	2 cut(s)	70, 229
DpnI	GATC	2 cut(s)	57, 128
DpnII	GATC	2 cut(s)	55, 126
EciI	GGCGGA	2 cut(s)	38, 332
Eco130I	CCWWGG	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	76, 265
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	290
FaiI	YATR	1 cut(s)	288
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	3 cut(s)	41, 211, 247
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	41, 211, 247
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	3 cut(s)	41, 211, 247
GsuI	CTGGAG	3 cut(s)	113, 185, 320
HaeIII	GGCC	2 cut(s)	143, 291
HapII	CCGG	4 cut(s)	44, 59, 80, 154
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	5 cut(s)	35, 64, 148, 236, 323
HpaII	CCGG	4 cut(s)	44, 59, 80, 154
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	116, 328
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	2 cut(s)	35, 185
HpyAV	CCTTC	4 cut(s)	7, 133, 179, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 219
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	55, 126
LmnI	GCTCC	2 cut(s)	103, 168
LpnPI	CCDG	9 cut(s)	57, 72, 77, 93, 154, 167, 215, 239, 284
LweI	GCATC	3 cut(s)	78, 198, 258
MalI	GATC	2 cut(s)	57, 128
MboI	GATC	2 cut(s)	55, 126
MboII	GAAGA	1 cut(s)	22
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	108
MlyI	GAGTC	3 cut(s)	44, 245, 332
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	8 cut(s)	93, 209, 224, 227, 242, 295, 307, 313
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	4 cut(s)	44, 59, 80, 154
MspR9I	CCNGG	2 cut(s)	80, 155
MvnI	CGCG	4 cut(s)	180, 222, 244, 246
MwoI	GCNNNNNNNGC	2 cut(s)	186, 219
NciI	CCSGG	2 cut(s)	80, 155
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	2 cut(s)	55, 126
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	3 cut(s)	78, 128, 292
PaeR7I	CTCGAG	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	64, 148
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	3 cut(s)	42, 212, 248
PleI	GAGTC	3 cut(s)	43, 244, 331
PpsI	GAGTC	3 cut(s)	43, 244, 331
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	78, 128, 292
PspPI	GGNCC	3 cut(s)	76, 265, 290
PspPPI	RGGWCCY	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	2 cut(s)	71, 230
RsaNI	GTAC	2 cut(s)	70, 229
SatI	GCNGC	3 cut(s)	41, 211, 247
Sau3AI	GATC	2 cut(s)	55, 126
Sau96I	GGNCC	3 cut(s)	76, 265, 290
SchI	GAGTC	3 cut(s)	44, 245, 332
ScrFI	CCNGG	2 cut(s)	80, 155
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	6 cut(s)	165, 201, 234, 300, 306, 312
SfaNI	GCATC	3 cut(s)	78, 198, 258
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	2 cut(s)	76, 265
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	9 cut(s)	23, 41, 166, 178, 211, 220, 246, 271, 317
StyD4I	CCNGG	2 cut(s)	78, 153
StyI	CCWWGG	1 cut(s)	286
TaqI	TCGA	4 cut(s)	30, 54, 183, 234
TauI	GCSGC	3 cut(s)	43, 213, 249
TfiI	GAWTC	2 cut(s)	64, 148
TspGWI	ACGGA	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	76, 265
XhoI	CTCGAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.