Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Reverse (-)

28720957 .. 28721184

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1197200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGGGCGGAAGAAGAGAGTGGTGGACTTCGACAAGTTGCCACCGGACTACTTCGATCCAGCGAATTCGTACAAGGACCCGGTGGCGATGCTGGAGATAAGGGAGCACTTGGTGCGGGAGAAGTTGATCGACATCGAGAAGGCCAAGATCATCAGGGAGAAACTCTGGTGGTGCTACCGCATCGAAGGCGTCAACCACCTCCAAAAGTGCCGCCACCGCGTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

76

Amino Acids

9.17

Weight (kDa)

9.43

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	5 cut(s)	7, 115, 178, 211, 217
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	64
AcyI	GRCGYC	1 cut(s)	189
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	226
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	78, 189
BpmI	CTGGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	44, 80
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	55, 126, 147
BspACI	CCGC	5 cut(s)	7, 115, 178, 211, 217
BspANI	GGCC	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	50
BssMI	GATC	3 cut(s)	55, 126, 147
BssNI	GRCGYC	1 cut(s)	189
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	58, 129, 150
BstMBI	GATC	3 cut(s)	55, 126, 147
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 186, 216
BstSCI	CCNGG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	2 cut(s)	178, 208
Csp6I	GTAC	1 cut(s)	70
CviJI	RGCY	1 cut(s)	143
CviKI_1	RGCY	1 cut(s)	143
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	3 cut(s)	57, 128, 149
DpnII	GATC	3 cut(s)	55, 126, 147
DraIII	CACNNNGTG	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	64
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	226
GluI	GCNGC	1 cut(s)	211
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	2 cut(s)	44, 80
HgaI	GACGC	2 cut(s)	178, 208
Hin1I	GRCGYC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HpaII	CCGG	2 cut(s)	44, 80
Hpy166II	GTNNAC	3 cut(s)	25, 193, 223
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	3 cut(s)	25, 193, 223
HpyAV	CCTTC	2 cut(s)	133, 179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 186, 216
Hsp92I	GRCGYC	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	55, 126, 147
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	57, 72, 77, 93, 139, 151
LweI	GCATC	2 cut(s)	78, 189
MaeI	CTAG	1 cut(s)	226
MalI	GATC	3 cut(s)	57, 128, 149
MboI	GATC	3 cut(s)	55, 126, 147
MboII	GAAGA	2 cut(s)	22, 25
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	1 cut(s)	64
MnlI	CCTC	1 cut(s)	209
MspI	CCGG	2 cut(s)	44, 80
MspR9I	CCNGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	112, 186, 216
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	55, 126, 147
NlaIV	GGNNCC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	76
PspPPI	RGGWCCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	3 cut(s)	55, 126, 147
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	78, 189
SinI	GGWCC	1 cut(s)	76
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	5 cut(s)	7, 115, 178, 211, 217
SspMI	CTAG	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	78
TaqI	TCGA	5 cut(s)	30, 54, 129, 135, 183
TasI	AATT	1 cut(s)	64
TauI	GCSGC	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	64
XspI	CTAG	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.