Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Forward (+)

5041799 .. 5042068

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G045100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCTTGGCGCTGGATATTTGAGTTTTTACAGTTTTCTAGAGTCTGTAAACTATCAAGGATTCTTCGACTTCGACGAGTCGTCGCCAGATGAGTTCGATTCGGCGAATCCGTACAAGGACCCGGTGTCGATGCTGGATACGAGGGAGCACACAGTGCGAGAGAAGTGGATAGACATCGAGAAGGCCAAGATCATCAGAGAAAAGCTCTACTGGTGCTACTGCATCGAGGGCGTCAACCACCTCCAGAAGTACTACCACCTTGTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008137 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009853 GO:0009987 GO:0010257 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032981 GO:0032991 GO:0033108 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0050136 GO:0055086 GO:0055114 GO:0065003 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

90

Amino Acids

10.67

Weight (kDa)

5.02

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	231
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	2 cut(s)	113, 251
AhdI	GACNNNNNGTC	2 cut(s)	79, 124
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	150
AoxI	GGCC	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	150
BciVI	GTATCC	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	2 cut(s)	38, 268
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	130
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	2 cut(s)	79, 124
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	2 cut(s)	120, 231
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpmI	CTGGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	215
Bse8I	GATNNNNATC	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	32, 154
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 228
BstSCI	CCNGG	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	159
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	112, 250
CviJI	RGCY	2 cut(s)	185, 205
CviKI_1	RGCY	2 cut(s)	185, 205
CviQI	GTAC	2 cut(s)	112, 250
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DraIII	CACNNNGTG	1 cut(s)	154
DriI	GACNNNNNGTC	2 cut(s)	79, 124
Eam1105I	GACNNNNNGTC	2 cut(s)	79, 124
Eco47I	GGWCC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	118
FspBI	CTAG	2 cut(s)	38, 268
GlaI	GCGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	5 cut(s)	41, 60, 77, 98, 106
HpaII	CCGG	1 cut(s)	122
Hpy166II	GTNNAC	3 cut(s)	49, 235, 265
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	3 cut(s)	38, 178, 244
Hpy8I	GTNNAC	3 cut(s)	49, 235, 265
Hpy99I	CGWCG	2 cut(s)	77, 85
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	2 cut(s)	32, 154
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 228
Hsp92I	GRCGYC	1 cut(s)	231
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	99, 119, 135, 196, 257
LweI	GCATC	2 cut(s)	120, 231
MaeI	CTAG	2 cut(s)	38, 268
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	50, 86
MnlI	CCTC	3 cut(s)	135, 220, 251
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	154, 228
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	1 cut(s)	189
NlaIV	GGNNCC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 107
PfeI	GAWTC	3 cut(s)	60, 98, 106
PleI	GAGTC	2 cut(s)	49, 85
PpsI	GAGTC	2 cut(s)	49, 85
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
RsaI	GTAC	2 cut(s)	113, 251
RsaNI	GTAC	2 cut(s)	112, 250
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	118
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	2 cut(s)	50, 86
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	3 cut(s)	207, 243, 261
SfaNI	GCATC	2 cut(s)	120, 231
SinI	GGWCC	1 cut(s)	118
SspMI	CTAG	2 cut(s)	38, 268
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	32, 154
TaqI	TCGA	6 cut(s)	66, 72, 96, 128, 177, 225
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	3 cut(s)	60, 98, 106
TscAI	CASTG	1 cut(s)	159
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	118
XbaI	TCTAGA	1 cut(s)	37
XspI	CTAG	2 cut(s)	38, 268
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.